Ggra9098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9098.t1
Unique NameGgra9098.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:182629..184410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9098Ggra9098Gracilaria gracilis GNS1m malegenetig00000176_pilon 182629..184410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1Ggra9098.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 182629..184410 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1.stop1Ggra9098.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 182629..182631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1.CDS1Ggra9098.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 182629..183474 -
Ggra9098.t1.CDS2Ggra9098.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 184168..184410 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1.exon1Ggra9098.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 182629..183474 -
Ggra9098.t1.exon2Ggra9098.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 184168..184410 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1.intron1Ggra9098.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 183475..184167 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9098.t1.start1Ggra9098.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 184408..184410 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9098.t1 ID=Ggra9098.t1|Name=Ggra9098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp
MASVALSNLPWWTSDADVEALCARAHAPARRAIGAVRFAVDAHSGKSLGR
VAVALSSRQVAEPLRAALAADPPPPASPSAPPDARARRGKGRETLIINKY
GDRVLVYRPDQDKEDPRRRPSSRRSARESSDEFETTAKLNIPEEVKERLR
ERMQNERHSQHNRSAERSESPRRFSPERERQRERDRSRDGRGRDDRGRDD
RGRDDRERDDRERDDRGRDDRGRDDRGRDDRGRDDRGRDRHRERRRDRTR
ERSPFNGSSRRRSRSHSPDWSEEHRSSKRRRHGHYESSQWYRGSDSAKHD
DTPVKSRAEDEEPPPRRTRRRGGRSRRRAHANANQQASSSVGDKADMPSD
RRNSRRQRSGRR*
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spliced messenger RNA

>Ggra9098.t1 ID=Ggra9098.t1|Name=Ggra9098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000176_pilon:182629..184410- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAGCGTGGCGCTGAGCAATCTTCCGTGGTGGACGTCGGACGCGGA
CGTGGAGGCGCTGTGCGCGCGCGCGCACGCGCCGGCGCGGCGCGCCATCG
GCGCCGTGCGCTTCGCGGTGGACGCGCACAGCGGCAAGAGCCTGGGGCGC
GTGGCGGTGGCGCTGTCGTCGCGGCAGGTGGCCGAGCCGCTGCGCGCCGC
GCTGGCCGCCGATCCGCCGCCGCCGGCGTCGCCCTCCGCGCCGCCCGATG
CGCGCGCTCGCCGCGGCAAGGGGCGCGAGACGCTTATCATCAACAAGTAC
GGCGATCGCGTGCTGGTGTATCGCCCGGACCAGGACAAGGAGGACCCGCG
TCGTCGCCCGTCTTCACGCAGGTCTGCGCGTGAGTCCTCGGATGAGTTTG
AGACCACTGCCAAGCTCAACATCCCGGAGGAGGTGAAGGAACGTCTTCGC
GAGCGCATGCAGAATGAGAGGCACTCTCAGCATAATCGATCGGCGGAGCG
ATCGGAATCGCCTCGCCGCTTTTCGCCGGAGCGCGAGCGACAGCGCGAAA
GAGACCGCTCCCGGGATGGCCGTGGGCGCGATGACCGTGGGCGCGATGAC
CGCGGACGGGATGACCGTGAGCGCGATGACCGTGAGCGCGATGACCGTGG
ACGGGATGACCGTGGACGGGATGACCGCGGACGGGATGATCGCGGACGAG
ATGACCGTGGTCGGGACCGTCACCGAGAGCGCCGGAGGGATCGCACGCGC
GAGCGTTCACCGTTTAACGGGTCGTCGCGTCGTCGCTCCAGATCTCATTC
ACCAGACTGGTCTGAAGAGCATCGCAGCTCGAAGCGTCGACGACACGGCC
ACTATGAATCTTCACAGTGGTATCGAGGCTCTGATTCTGCAAAACATGAC
GACACACCGGTGAAGAGCCGTGCCGAGGATGAGGAGCCACCGCCGAGGAG
AACGAGGAGGAGGGGTGGTCGGTCGAGGAGGCGTGCACACGCCAATGCAA
ATCAGCAAGCTTCAAGTTCGGTTGGAGATAAAGCTGATATGCCGTCGGAT
AGAAGGAATTCGAGGAGACAAAGATCAGGGAGAAGATGA
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protein sequence of Ggra9098.t1

>Ggra9098.t1 ID=Ggra9098.t1|Name=Ggra9098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MASVALSNLPWWTSDADVEALCARAHAPARRAIGAVRFAVDAHSGKSLGR
VAVALSSRQVAEPLRAALAADPPPPASPSAPPDARARRGKGRETLIINKY
GDRVLVYRPDQDKEDPRRRPSSRRSARESSDEFETTAKLNIPEEVKERLR
ERMQNERHSQHNRSAERSESPRRFSPERERQRERDRSRDGRGRDDRGRDD
RGRDDRERDDRERDDRGRDDRGRDDRGRDDRGRDDRGRDRHRERRRDRTR
ERSPFNGSSRRRSRSHSPDWSEEHRSSKRRRHGHYESSQWYRGSDSAKHD
DTPVKSRAEDEEPPPRRTRRRGGRSRRRAHANANQQASSSVGDKADMPSD
RRNSRRQRSGRR*
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mRNA from alignment at tig00000176_pilon:182629..184410-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9098.t1 ID=Ggra9098.t1|Name=Ggra9098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1782bp|location=Sequence derived from alignment at tig00000176_pilon:182629..184410- (Gracilaria gracilis GNS1m male)
ATGGCGAGCGTGGCGCTGAGCAATCTTCCGTGGTGGACGTCGGACGCGGA
CGTGGAGGCGCTGTGCGCGCGCGCGCACGCGCCGGCGCGGCGCGCCATCG
GCGCCGTGCGCTTCGCGGTGGACGCGCACAGCGGCAAGAGCCTGGGGCGC
GTGGCGGTGGCGCTGTCGTCGCGGCAGGTGGCCGAGCCGCTGCGCGCCGC
GCTGGCCGCCGATCCGCCGCCGCCGGCGTCGCCCTCCGCGCCGGTTTGCG
TCGCGCTGCTGCCGTCCGCAGACGTCGACCGCTTCCTCTACCCGCCGCAG
CACAAGCTGCATGCCGCGCCGCCGTCCAACTTCCCGGCGCCTATGGCGCC
CTTTCCGCCGCGCTCCATGTTTCCGCCCGGCATGCCGCCGCCGCCCATGC
CGCCGGGCATGCCGCCGCCGCCGGCATTCATGCCGCACCCCTTCATGTGG
ATGCCGCCCAACCACGCGCAGCGCCAGCCGCAGTCGCAGCGCCAGCCGCA
GTCGCAGCGCCAGCCGCAGTCGCAGCGCCAGCCGCAGTCGCAGCGCCAGC
AGCAGTCGCAGCGCCAGTCGCAGCGCCAGCCGCAGCCGCCGCGCCAGCCG
CAGCCGCCTCGTCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCAGCAGCC
GCCGCAGCCGCCGCAGCGGCCGCAGCAACAGCCGCCGCCGCAGCGCGCGC
CGCAGCAGAGCAACGCCGAGCACGTGCATCACGAACCGCCCGCGCAGCAC
GACGAGCAGCCGCCGCGCTCGCCGCGCGCCGCGTCGCGTGCGCGTCGCTC
CGGCTCGCCGTCGCACTCGCCGCCGCCCAGTGACCATTCGCCGCATCGCT
CCTCTCCGCGTCGCGCTTCTTCGCCGCGTCGCTCGCCGCGTCGCTCGTCG
TCGCCGTCGCGCTCGCGCCGTCGCCACTCGCCGCAGCCCGATGCGCGCGC
TCGCCGCGGCAAGGGGCGCGAGACGCTTATCATCAACAAGTACGGCGATC
GCGTGCTGGTGTATCGCCCGGACCAGGACAAGGAGGACCCGCGTCGTCGC
CCGTCTTCACGCAGGTCTGCGCGTGAGTCCTCGGATGAGTTTGAGACCAC
TGCCAAGCTCAACATCCCGGAGGAGGTGAAGGAACGTCTTCGCGAGCGCA
TGCAGAATGAGAGGCACTCTCAGCATAATCGATCGGCGGAGCGATCGGAA
TCGCCTCGCCGCTTTTCGCCGGAGCGCGAGCGACAGCGCGAAAGAGACCG
CTCCCGGGATGGCCGTGGGCGCGATGACCGTGGGCGCGATGACCGCGGAC
GGGATGACCGTGAGCGCGATGACCGTGAGCGCGATGACCGTGGACGGGAT
GACCGTGGACGGGATGACCGCGGACGGGATGATCGCGGACGAGATGACCG
TGGTCGGGACCGTCACCGAGAGCGCCGGAGGGATCGCACGCGCGAGCGTT
CACCGTTTAACGGGTCGTCGCGTCGTCGCTCCAGATCTCATTCACCAGAC
TGGTCTGAAGAGCATCGCAGCTCGAAGCGTCGACGACACGGCCACTATGA
ATCTTCACAGTGGTATCGAGGCTCTGATTCTGCAAAACATGACGACACAC
CGGTGAAGAGCCGTGCCGAGGATGAGGAGCCACCGCCGAGGAGAACGAGG
AGGAGGGGTGGTCGGTCGAGGAGGCGTGCACACGCCAATGCAAATCAGCA
AGCTTCAAGTTCGGTTGGAGATAAAGCTGATATGCCGTCGGATAGAAGGA
ATTCGAGGAGACAAAGATCAGGGAGAAGATGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:182629..184410-

>Ggra9098.t1 ID=Ggra9098.t1|Name=Ggra9098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000176_pilon:182629..184410- (Gracilaria gracilis GNS1m male)
ATGGCGAGCGTGGCGCTGAGCAATCTTCCGTGGTGGACGTCGGACGCGGA
CGTGGAGGCGCTGTGCGCGCGCGCGCACGCGCCGGCGCGGCGCGCCATCG
GCGCCGTGCGCTTCGCGGTGGACGCGCACAGCGGCAAGAGCCTGGGGCGC
GTGGCGGTGGCGCTGTCGTCGCGGCAGGTGGCCGAGCCGCTGCGCGCCGC
GCTGGCCGCCGATCCGCCGCCGCCGGCGTCGCCCTCCGCGCCGCCCGATG
CGCGCGCTCGCCGCGGCAAGGGGCGCGAGACGCTTATCATCAACAAGTAC
GGCGATCGCGTGCTGGTGTATCGCCCGGACCAGGACAAGGAGGACCCGCG
TCGTCGCCCGTCTTCACGCAGGTCTGCGCGTGAGTCCTCGGATGAGTTTG
AGACCACTGCCAAGCTCAACATCCCGGAGGAGGTGAAGGAACGTCTTCGC
GAGCGCATGCAGAATGAGAGGCACTCTCAGCATAATCGATCGGCGGAGCG
ATCGGAATCGCCTCGCCGCTTTTCGCCGGAGCGCGAGCGACAGCGCGAAA
GAGACCGCTCCCGGGATGGCCGTGGGCGCGATGACCGTGGGCGCGATGAC
CGCGGACGGGATGACCGTGAGCGCGATGACCGTGAGCGCGATGACCGTGG
ACGGGATGACCGTGGACGGGATGACCGCGGACGGGATGATCGCGGACGAG
ATGACCGTGGTCGGGACCGTCACCGAGAGCGCCGGAGGGATCGCACGCGC
GAGCGTTCACCGTTTAACGGGTCGTCGCGTCGTCGCTCCAGATCTCATTC
ACCAGACTGGTCTGAAGAGCATCGCAGCTCGAAGCGTCGACGACACGGCC
ACTATGAATCTTCACAGTGGTATCGAGGCTCTGATTCTGCAAAACATGAC
GACACACCGGTGAAGAGCCGTGCCGAGGATGAGGAGCCACCGCCGAGGAG
AACGAGGAGGAGGGGTGGTCGGTCGAGGAGGCGTGCACACGCCAATGCAA
ATCAGCAAGCTTCAAGTTCGGTTGGAGATAAAGCTGATATGCCGTCGGAT
AGAAGGAATTCGAGGAGACAAAGATCAGGGAGAAGATGA
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