Ggra9095.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9095.t1
Unique NameGgra9095.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:177252..177848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705235.1
Preferred nameTAF11
PFAMsTAFII28
Max annot lvl2759|Eukaryota
KEGG koko:K02870,ko:K03135
KEGG Pathwayko03010,ko03022,map03010,map03022
KEGG ModuleM00177
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0012505,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032459,GO:0032461,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035257,GO:0035821,GO:0042795,GO:0042809,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0046782,GO:0046966,GO:0047485,GO:0048518,GO:0048522,GO:0048524,GO:0048583,GO:0050434,GO:0050789,GO:0050792,GO:0050794,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051427,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0055029,GO:0060147,GO:0060148,GO:0060255,GO:0060966,GO:0060968,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070578,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1900368,GO:1900370,GO:1901090,GO:1901092,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1902555,GO:1902680,GO:1903506,GO:1903508,GO:1905348,GO:1990234,GO:2000112,GO:2001141
Evalue1.47e-22
EggNOG OGsCOG5251@1|root,KOG3219@2759|Eukaryota
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryK
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9095Ggra9095Gracilaria gracilis GNS1m malegenetig00000176_pilon 177252..177848 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1.stop1Ggra9095.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 177252..177254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1.CDS1Ggra9095.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 177252..177848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1.exon1Ggra9095.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 177252..177848 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1.start1Ggra9095.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 177846..177848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9095.t1Ggra9095.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 177252..177848 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=199bp
MQDSDQERQAEPMEDTSMPMVDESPPAESVNQTDDVEMTTGKEDENKKDG
EGTGPPLKDAVKNTSESAPAPEEPEDEDAPLDLMKMREFEFSQVSNLTPA
QLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGD
VVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNRSEGSLW*
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spliced messenger RNA

>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000176_pilon:177252..177848- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGACTCAGACCAAGAAAGGCAAGCGGAGCCAATGGAGGACACCTC
TATGCCAATGGTTGACGAAAGTCCGCCCGCGGAGTCGGTTAACCAAACAG
ATGATGTTGAAATGACTACAGGAAAGGAGGATGAAAACAAGAAAGATGGA
GAAGGCACTGGTCCACCACTCAAAGACGCAGTGAAAAACACATCTGAATC
TGCTCCAGCGCCAGAAGAACCCGAGGATGAGGACGCTCCACTTGATCTTA
TGAAGATGCGCGAATTTGAATTTAGTCAAGTGTCAAACCTTACCCCGGCT
CAGCTGCGCCGGTATGAGCAGTATCGCCGGAGTGATTTGAAAAGTTCGAA
AGTACGCAAGGTATTGACAGCCCTCAACCCTATGATGCAGAAAGCCTCGG
AGCAATACGTCATCGCCATTAAGGGGCTTGGGAAACTGTTTGTCGGTGAT
GTTGTAGAGACCGCTCTGGAAGTTCGGAAAGAGCGCGGCGAAACGGGTGC
GTTGACTCCCAGACAAATCAGAGAAGCTTATCGACGATTGCGCAGAGCGG
GTGCCGTACCTACAACTTCAAACCGATCAGAGGGATCTTTGTGGTAA
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protein sequence of Ggra9095.t1

>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=199bp
MQDSDQERQAEPMEDTSMPMVDESPPAESVNQTDDVEMTTGKEDENKKDG
EGTGPPLKDAVKNTSESAPAPEEPEDEDAPLDLMKMREFEFSQVSNLTPA
QLRRYEQYRRSDLKSSKVRKVLTALNPMMQKASEQYVIAIKGLGKLFVGD
VVETALEVRKERGETGALTPRQIREAYRRLRRAGAVPTTSNRSEGSLW*
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mRNA from alignment at tig00000176_pilon:177252..177848-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=597bp|location=Sequence derived from alignment at tig00000176_pilon:177252..177848- (Gracilaria gracilis GNS1m male)
ATGCAAGACTCAGACCAAGAAAGGCAAGCGGAGCCAATGGAGGACACCTC
TATGCCAATGGTTGACGAAAGTCCGCCCGCGGAGTCGGTTAACCAAACAG
ATGATGTTGAAATGACTACAGGAAAGGAGGATGAAAACAAGAAAGATGGA
GAAGGCACTGGTCCACCACTCAAAGACGCAGTGAAAAACACATCTGAATC
TGCTCCAGCGCCAGAAGAACCCGAGGATGAGGACGCTCCACTTGATCTTA
TGAAGATGCGCGAATTTGAATTTAGTCAAGTGTCAAACCTTACCCCGGCT
CAGCTGCGCCGGTATGAGCAGTATCGCCGGAGTGATTTGAAAAGTTCGAA
AGTACGCAAGGTATTGACAGCCCTCAACCCTATGATGCAGAAAGCCTCGG
AGCAATACGTCATCGCCATTAAGGGGCTTGGGAAACTGTTTGTCGGTGAT
GTTGTAGAGACCGCTCTGGAAGTTCGGAAAGAGCGCGGCGAAACGGGTGC
GTTGACTCCCAGACAAATCAGAGAAGCTTATCGACGATTGCGCAGAGCGG
GTGCCGTACCTACAACTTCAAACCGATCAGAGGGATCTTTGTGGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:177252..177848-

>Ggra9095.t1 ID=Ggra9095.t1|Name=Ggra9095.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=597bp|location=Sequence derived from alignment at tig00000176_pilon:177252..177848- (Gracilaria gracilis GNS1m male)
ATGCAAGACTCAGACCAAGAAAGGCAAGCGGAGCCAATGGAGGACACCTC
TATGCCAATGGTTGACGAAAGTCCGCCCGCGGAGTCGGTTAACCAAACAG
ATGATGTTGAAATGACTACAGGAAAGGAGGATGAAAACAAGAAAGATGGA
GAAGGCACTGGTCCACCACTCAAAGACGCAGTGAAAAACACATCTGAATC
TGCTCCAGCGCCAGAAGAACCCGAGGATGAGGACGCTCCACTTGATCTTA
TGAAGATGCGCGAATTTGAATTTAGTCAAGTGTCAAACCTTACCCCGGCT
CAGCTGCGCCGGTATGAGCAGTATCGCCGGAGTGATTTGAAAAGTTCGAA
AGTACGCAAGGTATTGACAGCCCTCAACCCTATGATGCAGAAAGCCTCGG
AGCAATACGTCATCGCCATTAAGGGGCTTGGGAAACTGTTTGTCGGTGAT
GTTGTAGAGACCGCTCTGGAAGTTCGGAAAGAGCGCGGCGAAACGGGTGC
GTTGACTCCCAGACAAATCAGAGAAGCTTATCGACGATTGCGCAGAGCGG
GTGCCGTACCTACAACTTCAAACCGATCAGAGGGATCTTTGTGGTAA
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