Ggra9093.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9093.t1
Unique NameGgra9093.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:174676..175563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008613117.1
PFAMsDUF92
Max annot lvl2759|Eukaryota
Evalue1.74e-54
EggNOG OGsCOG1836@1|root,KOG4491@2759|Eukaryota
DescriptionIntegral membrane protein DUF92
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9093Ggra9093Gracilaria gracilis GNS1m malegenetig00000176_pilon 174676..175563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9093.t1.stop1Ggra9093.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 174676..174678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9093.t1.CDS1Ggra9093.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 174676..175563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9093.t1.exon1Ggra9093.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 174676..175563 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9093.t1.start1Ggra9093.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 175561..175563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9093.t1Ggra9093.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 174676..175563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9093.t1 ID=Ggra9093.t1|Name=Ggra9093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MSQITTSEVLRVVTALLFATTLAVRGRRRKSLSPSGAVAAFVVGLVSFVA
SIRFGLTLLSFYLSATRATKYKSDYKRRIDDGYSAAHGNRNASQVLASSL
PAVVVALFYVLWFRVDSVISTDEPQPSMLLLAFMLFFAACAGDTFASEIG
IAMPGPGKLPVLIIAPWRNVPRGTNGGVTWEGTLASALGGFIVGLTFFLA
GPSHNASQAMLIPAGVFGGVVGSLIDSVIGCLVQASWLNKKEGKVVKEKP
ILNATTEGWYEHICGVDMLSGETVNVLSAIATAGCAPFVLQLFSN*
back to top

spliced messenger RNA

>Ggra9093.t1 ID=Ggra9093.t1|Name=Ggra9093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000176_pilon:174676..175563- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCAGATCACCACATCCGAAGTGCTACGCGTCGTCACCGCCCTGCT
CTTCGCCACCACCCTCGCGGTGCGCGGTCGCCGTCGGAAGTCGCTCTCAC
CATCTGGCGCCGTCGCAGCGTTTGTCGTTGGTTTGGTCAGCTTCGTTGCC
TCCATTCGCTTCGGGCTCACGCTTCTTTCGTTCTACCTGTCCGCCACGCG
CGCCACCAAGTACAAATCCGACTACAAGCGTCGCATCGACGATGGCTACT
CCGCGGCGCACGGTAACCGCAACGCCTCGCAAGTGCTGGCAAGTTCGTTG
CCGGCCGTCGTCGTTGCGCTGTTTTACGTGCTGTGGTTCCGGGTGGATTC
AGTGATTTCAACGGACGAGCCGCAGCCGTCCATGTTGTTGCTGGCGTTCA
TGTTGTTCTTTGCGGCGTGTGCTGGCGATACGTTTGCATCCGAGATAGGC
ATCGCGATGCCGGGCCCGGGCAAACTGCCCGTTTTGATCATAGCCCCGTG
GCGAAACGTGCCGCGTGGTACAAATGGCGGCGTCACGTGGGAAGGTACGT
TGGCGTCGGCCTTGGGTGGCTTCATTGTAGGGTTAACCTTCTTTTTGGCT
GGTCCGAGTCACAACGCATCACAGGCGATGTTGATCCCGGCCGGCGTTTT
TGGCGGCGTCGTTGGCAGTCTGATTGATTCGGTGATCGGATGTTTGGTAC
AGGCTTCGTGGCTGAATAAGAAGGAAGGAAAGGTGGTTAAGGAAAAACCA
ATACTGAATGCCACCACTGAAGGTTGGTACGAGCACATCTGCGGCGTGGA
TATGTTGAGCGGCGAGACCGTGAATGTTCTGTCTGCCATAGCAACAGCTG
GCTGTGCGCCGTTTGTGTTGCAGCTGTTCAGCAACTGA
back to top

protein sequence of Ggra9093.t1

>Ggra9093.t1 ID=Ggra9093.t1|Name=Ggra9093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MSQITTSEVLRVVTALLFATTLAVRGRRRKSLSPSGAVAAFVVGLVSFVA
SIRFGLTLLSFYLSATRATKYKSDYKRRIDDGYSAAHGNRNASQVLASSL
PAVVVALFYVLWFRVDSVISTDEPQPSMLLLAFMLFFAACAGDTFASEIG
IAMPGPGKLPVLIIAPWRNVPRGTNGGVTWEGTLASALGGFIVGLTFFLA
GPSHNASQAMLIPAGVFGGVVGSLIDSVIGCLVQASWLNKKEGKVVKEKP
ILNATTEGWYEHICGVDMLSGETVNVLSAIATAGCAPFVLQLFSN*
back to top

mRNA from alignment at tig00000176_pilon:174676..175563-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9093.t1 ID=Ggra9093.t1|Name=Ggra9093.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000176_pilon:174676..175563- (Gracilaria gracilis GNS1m male)
ATGTCCCAGATCACCACATCCGAAGTGCTACGCGTCGTCACCGCCCTGCT
CTTCGCCACCACCCTCGCGGTGCGCGGTCGCCGTCGGAAGTCGCTCTCAC
CATCTGGCGCCGTCGCAGCGTTTGTCGTTGGTTTGGTCAGCTTCGTTGCC
TCCATTCGCTTCGGGCTCACGCTTCTTTCGTTCTACCTGTCCGCCACGCG
CGCCACCAAGTACAAATCCGACTACAAGCGTCGCATCGACGATGGCTACT
CCGCGGCGCACGGTAACCGCAACGCCTCGCAAGTGCTGGCAAGTTCGTTG
CCGGCCGTCGTCGTTGCGCTGTTTTACGTGCTGTGGTTCCGGGTGGATTC
AGTGATTTCAACGGACGAGCCGCAGCCGTCCATGTTGTTGCTGGCGTTCA
TGTTGTTCTTTGCGGCGTGTGCTGGCGATACGTTTGCATCCGAGATAGGC
ATCGCGATGCCGGGCCCGGGCAAACTGCCCGTTTTGATCATAGCCCCGTG
GCGAAACGTGCCGCGTGGTACAAATGGCGGCGTCACGTGGGAAGGTACGT
TGGCGTCGGCCTTGGGTGGCTTCATTGTAGGGTTAACCTTCTTTTTGGCT
GGTCCGAGTCACAACGCATCACAGGCGATGTTGATCCCGGCCGGCGTTTT
TGGCGGCGTCGTTGGCAGTCTGATTGATTCGGTGATCGGATGTTTGGTAC
AGGCTTCGTGGCTGAATAAGAAGGAAGGAAAGGTGGTTAAGGAAAAACCA
ATACTGAATGCCACCACTGAAGGTTGGTACGAGCACATCTGCGGCGTGGA
TATGTTGAGCGGCGAGACCGTGAATGTTCTGTCTGCCATAGCAACAGCTG
GCTGTGCGCCGTTTGTGTTGCAGCTGTTCAGCAACTGA
back to top

Coding sequence (CDS) from alignment at tig00000176_pilon:174676..175563-

>Ggra9093.t1 ID=Ggra9093.t1|Name=Ggra9093.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000176_pilon:174676..175563- (Gracilaria gracilis GNS1m male)
ATGTCCCAGATCACCACATCCGAAGTGCTACGCGTCGTCACCGCCCTGCT
CTTCGCCACCACCCTCGCGGTGCGCGGTCGCCGTCGGAAGTCGCTCTCAC
CATCTGGCGCCGTCGCAGCGTTTGTCGTTGGTTTGGTCAGCTTCGTTGCC
TCCATTCGCTTCGGGCTCACGCTTCTTTCGTTCTACCTGTCCGCCACGCG
CGCCACCAAGTACAAATCCGACTACAAGCGTCGCATCGACGATGGCTACT
CCGCGGCGCACGGTAACCGCAACGCCTCGCAAGTGCTGGCAAGTTCGTTG
CCGGCCGTCGTCGTTGCGCTGTTTTACGTGCTGTGGTTCCGGGTGGATTC
AGTGATTTCAACGGACGAGCCGCAGCCGTCCATGTTGTTGCTGGCGTTCA
TGTTGTTCTTTGCGGCGTGTGCTGGCGATACGTTTGCATCCGAGATAGGC
ATCGCGATGCCGGGCCCGGGCAAACTGCCCGTTTTGATCATAGCCCCGTG
GCGAAACGTGCCGCGTGGTACAAATGGCGGCGTCACGTGGGAAGGTACGT
TGGCGTCGGCCTTGGGTGGCTTCATTGTAGGGTTAACCTTCTTTTTGGCT
GGTCCGAGTCACAACGCATCACAGGCGATGTTGATCCCGGCCGGCGTTTT
TGGCGGCGTCGTTGGCAGTCTGATTGATTCGGTGATCGGATGTTTGGTAC
AGGCTTCGTGGCTGAATAAGAAGGAAGGAAAGGTGGTTAAGGAAAAACCA
ATACTGAATGCCACCACTGAAGGTTGGTACGAGCACATCTGCGGCGTGGA
TATGTTGAGCGGCGAGACCGTGAATGTTCTGTCTGCCATAGCAACAGCTG
GCTGTGCGCCGTTTGTGTTGCAGCTGTTCAGCAACTGA
back to top