Ggra9089.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9089.t1
Unique NameGgra9089.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length78
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:163801..164116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog235909.GK0124
Preferred namerpmD
PFAMsRibosomal_L30
Max annot lvl91061|Bacilli
KEGG koko:K02907
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0015934,GO:0022625,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
Evalue3.07e-14
EggNOG OGsCOG1841@1|root,COG1841@2|Bacteria,1VEG4@1239|Firmicutes,4HNHF@91061|Bacilli,1WGT3@129337|Geobacillus
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9089Ggra9089Gracilaria gracilis GNS1m malegenetig00000176_pilon 163801..164116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1Ggra9089.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 163801..164116 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1.start1Ggra9089.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 163801..163803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1.CDS1Ggra9089.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 163801..163896 +
Ggra9089.t1.CDS2Ggra9089.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 163979..164116 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1.exon1Ggra9089.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 163801..163896 +
Ggra9089.t1.exon2Ggra9089.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 163979..164116 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1.intron1Ggra9089.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 163897..163978 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9089.t1.stop1Ggra9089.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 164114..164116 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=78bp
MKASDVLRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPR
VWGMLKKVIHLVKIERIHAQDVQNKGL*
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spliced messenger RNA

>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp|location=Sequence derived from alignment at tig00000176_pilon:163801..164116+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCAGCGATGTGTTGAGAAACACCAAACTGTCAGTCAAGTTGAT
CCGCAGCACCATCGGGCGACCACCAAAGCAAAGAACCATCGTTCGCCATC
TTGGATTTAGAAAACTGAATCAAACTACCATTCATGACGACGGTCCGCGC
GTATGGGGTATGCTTAAGAAAGTCATCCATCTCGTGAAGATTGAGAGAAT
ACACGCTCAAGACGTCCAGAACAAGGGACTCTAA
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protein sequence of Ggra9089.t1

>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=78bp
MKASDVLRNTKLSVKLIRSTIGRPPKQRTIVRHLGFRKLNQTTIHDDGPR
VWGMLKKVIHLVKIERIHAQDVQNKGL*
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mRNA from alignment at tig00000176_pilon:163801..164116+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp|location=Sequence derived from alignment at tig00000176_pilon:163801..164116+ (Gracilaria gracilis GNS1m male)
ATGAAGGCCAGCGATGTGTTGAGAAACACCAAACTGTCAGTCAAGTTGAT
CCGCAGCACCATCGGGCGACCACCAAAGCAAAGAACCATCGTTCGCGTAC
GTCACACTGTCCCGCACGTCACTTCGTCGCTCTCCTAAAGCTAACCATCC
TTGTACTTGTTGCTACCGTCTATAACAGCATCTTGGATTTAGAAAACTGA
ATCAAACTACCATTCATGACGACGGTCCGCGCGTATGGGGTATGCTTAAG
AAAGTCATCCATCTCGTGAAGATTGAGAGAATACACGCTCAAGACGTCCA
GAACAAGGGACTCTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:163801..164116+

>Ggra9089.t1 ID=Ggra9089.t1|Name=Ggra9089.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=234bp|location=Sequence derived from alignment at tig00000176_pilon:163801..164116+ (Gracilaria gracilis GNS1m male)
ATGAAGGCCAGCGATGTGTTGAGAAACACCAAACTGTCAGTCAAGTTGAT
CCGCAGCACCATCGGGCGACCACCAAAGCAAAGAACCATCGTTCGCCATC
TTGGATTTAGAAAACTGAATCAAACTACCATTCATGACGACGGTCCGCGC
GTATGGGGTATGCTTAAGAAAGTCATCCATCTCGTGAAGATTGAGAGAAT
ACACGCTCAAGACGTCCAGAACAAGGGACTCTAA
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