Ggra9087.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9087.t1
Unique Name	Ggra9087.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:159584..161443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9087	Ggra9087	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 159584..161443 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9087.t1.start1	Ggra9087.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 159584..159586 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9087.t1.CDS1	Ggra9087.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 159584..161443 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9087.t1.exon1	Ggra9087.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 159584..161443 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9087.t1.stop1	Ggra9087.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 161441..161443 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9087.t1	Ggra9087.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 159584..161443 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:159584..161443+
coding sequence from alignment at tig00000176_pilon:159584..161443+

mRNA sequence

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=620bp
MAPAFVRYIPNNDTVSPFVASNTLPTQPIATIGGKRTATDSHEKSGTGRK
SVHTNGTRNRQRNYSLFNASSERSQRPGRVKGATRDVYSSKSMEAKRKER
HSAAPTSFRTASGIVGSRTRGDMSLKRIIVDGSQSERNEVIRVLREGKMS
MALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIM
IDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYNAMIAACSRNQEPSLAYQ
VYQEMTDTGLKPDKFTFGTLIDLSAKCGDVELAFDLSNRMSESGVSKDQT
IYSALMEACGRAGQPERAFMVYEGMKKKGVWPNLIVFSVLIDMCANARDP
ERAFSIFAEARHWGFQKLNVIVYTALIDACAKGGWPEKAELVLQNMIEEQ
VKPNHITFGTLIDGWARKGEFDKAFDVLRRMEVEHRVKPTAILVGGLIDA
CRRYRQCSRVKKLWDVIVKYNIKPSRLYYPGLIGMAVSAGELPIACAIVL
HAYARGNLRRVTLNSEIPGIHAMACALVYLRHELHVNDEETASEENLRIA
ERLHVVFGSMPMTSEQMDAIPASEARDLCISWGDLKVGEDGHPARTSNRG
RTSPFRIGRSRSDKDTGGR*

spliced messenger RNA

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000176_pilon:159584..161443+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCTGCATTTGTAAGATATATTCCAAATAATGACACCGTATCCCC
TTTCGTGGCCAGCAACACGCTTCCGACACAGCCAATTGCTACAATCGGAG
GAAAAAGGACAGCTACGGACTCGCACGAAAAGTCTGGTACAGGCCGGAAA
TCTGTGCACACGAACGGCACCAGAAATAGGCAGAGAAACTATTCGTTGTT
CAATGCTTCATCTGAGAGATCGCAGCGACCTGGAAGAGTGAAAGGTGCCA
CGCGCGATGTTTACAGTTCTAAATCCATGGAAGCGAAAAGAAAAGAAAGA
CACAGTGCTGCCCCAACTTCTTTTCGTACCGCAAGTGGTATTGTTGGAAG
TAGGACACGTGGGGACATGAGTTTGAAACGCATAATCGTCGATGGAAGTC
AATCAGAAAGGAATGAAGTGATCAGAGTGTTACGAGAAGGAAAGATGTCC
ATGGCTCTACATGACTTAAACGACATATTAATCACCTTGACTCGTCAAAA
ACGATACAATGAAGCAATGTCTGTTGTGGAACTAACGGAGCGAAAGCCAC
TGAGTGATCTTCTAACCGTATCTAAGGCGGTAAAGGCCTATACGATTATG
ATCGACCTCTATGGCAGAGCGCGTCAGCTCGACCGCGCATTTTCTATATT
TCGCGCCATGCGTCGAAAAGGTGTTCAACCCAATCTGGTTACGTACAATG
CAATGATTGCTGCATGTTCGAGGAATCAAGAACCATCCTTAGCGTACCAA
GTGTATCAAGAAATGACGGACACTGGACTCAAACCAGATAAGTTTACGTT
CGGAACACTAATCGACCTAAGCGCGAAATGTGGGGATGTAGAACTAGCTT
TTGATCTATCAAACCGAATGTCTGAGAGCGGGGTCTCAAAGGACCAAACT
ATCTACTCGGCTTTGATGGAGGCGTGTGGACGTGCAGGGCAACCGGAGCG
AGCCTTTATGGTCTATGAAGGTATGAAGAAAAAAGGAGTTTGGCCGAACT
TGATAGTGTTTTCTGTGCTTATCGATATGTGTGCTAACGCGCGGGATCCT
GAGCGTGCTTTTAGTATATTCGCTGAAGCGCGACACTGGGGCTTTCAGAA
GCTAAACGTCATTGTGTACACTGCACTTATCGATGCCTGTGCTAAGGGTG
GATGGCCAGAAAAAGCTGAGTTGGTTCTTCAAAACATGATTGAAGAGCAG
GTGAAACCAAATCACATAACGTTTGGAACATTGATCGACGGATGGGCGAG
GAAAGGCGAATTTGACAAAGCGTTCGATGTCTTGAGAAGAATGGAGGTAG
AGCATAGAGTCAAACCAACTGCGATTCTTGTTGGCGGTTTAATTGACGCA
TGTCGTCGATATCGTCAGTGCTCTCGAGTTAAAAAGTTGTGGGATGTTAT
AGTGAAATATAATATCAAACCTTCACGCCTGTACTACCCGGGACTCATAG
GAATGGCAGTGAGTGCTGGGGAATTGCCAATAGCATGCGCTATTGTTCTA
CATGCTTACGCACGGGGTAATTTGCGACGAGTAACTCTCAATAGTGAGAT
TCCAGGGATACATGCGATGGCTTGCGCGCTGGTCTATCTCCGGCATGAAC
TTCATGTTAATGACGAAGAAACGGCTTCTGAAGAAAACCTGCGAATCGCT
GAACGATTGCATGTGGTTTTTGGATCCATGCCGATGACAAGTGAACAAAT
GGATGCAATACCAGCTTCCGAGGCACGCGATCTTTGCATATCGTGGGGTG
ATCTCAAAGTTGGAGAGGATGGACATCCCGCGCGGACGTCAAATAGGGGC
AGAACAAGTCCATTCCGCATCGGTCGTTCACGCAGTGACAAAGATACCGG
CGGTAGATGA

protein sequence of Ggra9087.t1

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=620bp
MAPAFVRYIPNNDTVSPFVASNTLPTQPIATIGGKRTATDSHEKSGTGRK
SVHTNGTRNRQRNYSLFNASSERSQRPGRVKGATRDVYSSKSMEAKRKER
HSAAPTSFRTASGIVGSRTRGDMSLKRIIVDGSQSERNEVIRVLREGKMS
MALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIM
IDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYNAMIAACSRNQEPSLAYQ
VYQEMTDTGLKPDKFTFGTLIDLSAKCGDVELAFDLSNRMSESGVSKDQT
IYSALMEACGRAGQPERAFMVYEGMKKKGVWPNLIVFSVLIDMCANARDP
ERAFSIFAEARHWGFQKLNVIVYTALIDACAKGGWPEKAELVLQNMIEEQ
VKPNHITFGTLIDGWARKGEFDKAFDVLRRMEVEHRVKPTAILVGGLIDA
CRRYRQCSRVKKLWDVIVKYNIKPSRLYYPGLIGMAVSAGELPIACAIVL
HAYARGNLRRVTLNSEIPGIHAMACALVYLRHELHVNDEETASEENLRIA
ERLHVVFGSMPMTSEQMDAIPASEARDLCISWGDLKVGEDGHPARTSNRG
RTSPFRIGRSRSDKDTGGR*

mRNA from alignment at tig00000176_pilon:159584..161443+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000176_pilon:159584..161443+ (Gracilaria gracilis GNS1m male)
ATGGCACCTGCATTTGTAAGATATATTCCAAATAATGACACCGTATCCCC
TTTCGTGGCCAGCAACACGCTTCCGACACAGCCAATTGCTACAATCGGAG
GAAAAAGGACAGCTACGGACTCGCACGAAAAGTCTGGTACAGGCCGGAAA
TCTGTGCACACGAACGGCACCAGAAATAGGCAGAGAAACTATTCGTTGTT
CAATGCTTCATCTGAGAGATCGCAGCGACCTGGAAGAGTGAAAGGTGCCA
CGCGCGATGTTTACAGTTCTAAATCCATGGAAGCGAAAAGAAAAGAAAGA
CACAGTGCTGCCCCAACTTCTTTTCGTACCGCAAGTGGTATTGTTGGAAG
TAGGACACGTGGGGACATGAGTTTGAAACGCATAATCGTCGATGGAAGTC
AATCAGAAAGGAATGAAGTGATCAGAGTGTTACGAGAAGGAAAGATGTCC
ATGGCTCTACATGACTTAAACGACATATTAATCACCTTGACTCGTCAAAA
ACGATACAATGAAGCAATGTCTGTTGTGGAACTAACGGAGCGAAAGCCAC
TGAGTGATCTTCTAACCGTATCTAAGGCGGTAAAGGCCTATACGATTATG
ATCGACCTCTATGGCAGAGCGCGTCAGCTCGACCGCGCATTTTCTATATT
TCGCGCCATGCGTCGAAAAGGTGTTCAACCCAATCTGGTTACGTACAATG
CAATGATTGCTGCATGTTCGAGGAATCAAGAACCATCCTTAGCGTACCAA
GTGTATCAAGAAATGACGGACACTGGACTCAAACCAGATAAGTTTACGTT
CGGAACACTAATCGACCTAAGCGCGAAATGTGGGGATGTAGAACTAGCTT
TTGATCTATCAAACCGAATGTCTGAGAGCGGGGTCTCAAAGGACCAAACT
ATCTACTCGGCTTTGATGGAGGCGTGTGGACGTGCAGGGCAACCGGAGCG
AGCCTTTATGGTCTATGAAGGTATGAAGAAAAAAGGAGTTTGGCCGAACT
TGATAGTGTTTTCTGTGCTTATCGATATGTGTGCTAACGCGCGGGATCCT
GAGCGTGCTTTTAGTATATTCGCTGAAGCGCGACACTGGGGCTTTCAGAA
GCTAAACGTCATTGTGTACACTGCACTTATCGATGCCTGTGCTAAGGGTG
GATGGCCAGAAAAAGCTGAGTTGGTTCTTCAAAACATGATTGAAGAGCAG
GTGAAACCAAATCACATAACGTTTGGAACATTGATCGACGGATGGGCGAG
GAAAGGCGAATTTGACAAAGCGTTCGATGTCTTGAGAAGAATGGAGGTAG
AGCATAGAGTCAAACCAACTGCGATTCTTGTTGGCGGTTTAATTGACGCA
TGTCGTCGATATCGTCAGTGCTCTCGAGTTAAAAAGTTGTGGGATGTTAT
AGTGAAATATAATATCAAACCTTCACGCCTGTACTACCCGGGACTCATAG
GAATGGCAGTGAGTGCTGGGGAATTGCCAATAGCATGCGCTATTGTTCTA
CATGCTTACGCACGGGGTAATTTGCGACGAGTAACTCTCAATAGTGAGAT
TCCAGGGATACATGCGATGGCTTGCGCGCTGGTCTATCTCCGGCATGAAC
TTCATGTTAATGACGAAGAAACGGCTTCTGAAGAAAACCTGCGAATCGCT
GAACGATTGCATGTGGTTTTTGGATCCATGCCGATGACAAGTGAACAAAT
GGATGCAATACCAGCTTCCGAGGCACGCGATCTTTGCATATCGTGGGGTG
ATCTCAAAGTTGGAGAGGATGGACATCCCGCGCGGACGTCAAATAGGGGC
AGAACAAGTCCATTCCGCATCGGTCGTTCACGCAGTGACAAAGATACCGG
CGGTAGATGA

Coding sequence (CDS) from alignment at tig00000176_pilon:159584..161443+

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000176_pilon:159584..161443+ (Gracilaria gracilis GNS1m male)
ATGGCACCTGCATTTGTAAGATATATTCCAAATAATGACACCGTATCCCC
TTTCGTGGCCAGCAACACGCTTCCGACACAGCCAATTGCTACAATCGGAG
GAAAAAGGACAGCTACGGACTCGCACGAAAAGTCTGGTACAGGCCGGAAA
TCTGTGCACACGAACGGCACCAGAAATAGGCAGAGAAACTATTCGTTGTT
CAATGCTTCATCTGAGAGATCGCAGCGACCTGGAAGAGTGAAAGGTGCCA
CGCGCGATGTTTACAGTTCTAAATCCATGGAAGCGAAAAGAAAAGAAAGA
CACAGTGCTGCCCCAACTTCTTTTCGTACCGCAAGTGGTATTGTTGGAAG
TAGGACACGTGGGGACATGAGTTTGAAACGCATAATCGTCGATGGAAGTC
AATCAGAAAGGAATGAAGTGATCAGAGTGTTACGAGAAGGAAAGATGTCC
ATGGCTCTACATGACTTAAACGACATATTAATCACCTTGACTCGTCAAAA
ACGATACAATGAAGCAATGTCTGTTGTGGAACTAACGGAGCGAAAGCCAC
TGAGTGATCTTCTAACCGTATCTAAGGCGGTAAAGGCCTATACGATTATG
ATCGACCTCTATGGCAGAGCGCGTCAGCTCGACCGCGCATTTTCTATATT
TCGCGCCATGCGTCGAAAAGGTGTTCAACCCAATCTGGTTACGTACAATG
CAATGATTGCTGCATGTTCGAGGAATCAAGAACCATCCTTAGCGTACCAA
GTGTATCAAGAAATGACGGACACTGGACTCAAACCAGATAAGTTTACGTT
CGGAACACTAATCGACCTAAGCGCGAAATGTGGGGATGTAGAACTAGCTT
TTGATCTATCAAACCGAATGTCTGAGAGCGGGGTCTCAAAGGACCAAACT
ATCTACTCGGCTTTGATGGAGGCGTGTGGACGTGCAGGGCAACCGGAGCG
AGCCTTTATGGTCTATGAAGGTATGAAGAAAAAAGGAGTTTGGCCGAACT
TGATAGTGTTTTCTGTGCTTATCGATATGTGTGCTAACGCGCGGGATCCT
GAGCGTGCTTTTAGTATATTCGCTGAAGCGCGACACTGGGGCTTTCAGAA
GCTAAACGTCATTGTGTACACTGCACTTATCGATGCCTGTGCTAAGGGTG
GATGGCCAGAAAAAGCTGAGTTGGTTCTTCAAAACATGATTGAAGAGCAG
GTGAAACCAAATCACATAACGTTTGGAACATTGATCGACGGATGGGCGAG
GAAAGGCGAATTTGACAAAGCGTTCGATGTCTTGAGAAGAATGGAGGTAG
AGCATAGAGTCAAACCAACTGCGATTCTTGTTGGCGGTTTAATTGACGCA
TGTCGTCGATATCGTCAGTGCTCTCGAGTTAAAAAGTTGTGGGATGTTAT
AGTGAAATATAATATCAAACCTTCACGCCTGTACTACCCGGGACTCATAG
GAATGGCAGTGAGTGCTGGGGAATTGCCAATAGCATGCGCTATTGTTCTA
CATGCTTACGCACGGGGTAATTTGCGACGAGTAACTCTCAATAGTGAGAT
TCCAGGGATACATGCGATGGCTTGCGCGCTGGTCTATCTCCGGCATGAAC
TTCATGTTAATGACGAAGAAACGGCTTCTGAAGAAAACCTGCGAATCGCT
GAACGATTGCATGTGGTTTTTGGATCCATGCCGATGACAAGTGAACAAAT
GGATGCAATACCAGCTTCCGAGGCACGCGATCTTTGCATATCGTGGGGTG
ATCTCAAAGTTGGAGAGGATGGACATCCCGCGCGGACGTCAAATAGGGGC
AGAACAAGTCCATTCCGCATCGGTCGTTCACGCAGTGACAAAGATACCGG
CGGTAGATGA