Ggra9086.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9086.t1
Unique Name	Ggra9086.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	515

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:156785..158329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708092.1
PFAMs	AMP-binding,AMP-binding_C,TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00179
KEGG ko	ko:K12261,ko:K22133
KEGG Reaction	R01558
KEGG Pathway	ko00630,ko01100,ko04146,map00630,map01100,map04146
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0005911,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009117,GO:0009150,GO:0009259,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009987,GO:0010029,GO:0010030,GO:0010033,GO:0010035,GO:0010038,GO:0010154,GO:0010214,GO:0016020,GO:0016021,GO:0016054,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0019637,GO:0019693,GO:0019752,GO:0022414,GO:0030054,GO:0031090,GO:0031224,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0033609,GO:0033611,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0042579,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046395,GO:0046483,GO:0046686,GO:0048046,GO:0048316,GO:0048518,GO:0048580,GO:0048582,GO:0048608,GO:0048731,GO:0048856,GO:0050203,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055044,GO:0055086,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0072521,GO:0097159,GO:0098542,GO:0098588,GO:0098805,GO:1900140,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901575,GO:2000026
Evalue	5.04e-162
EggNOG OGs	COG0028@1\|root,COG0318@1\|root,KOG1176@2759\|Eukaryota,KOG1185@2759\|Eukaryota
EC	6.2.1.8
Description	thiamine pyrophosphate binding
COG category	EH
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9086	Ggra9086	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 156785..158329 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9086.t1.start1	Ggra9086.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 156785..156787 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9086.t1.CDS1	Ggra9086.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 156785..158329 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9086.t1.exon1	Ggra9086.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 156785..158329 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9086.t1.stop1	Ggra9086.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 158327..158329 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9086.t1	Ggra9086.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 156785..158329 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:156785..158329+
coding sequence from alignment at tig00000176_pilon:156785..158329+

mRNA sequence

>Ggra9086.t1 ID=Ggra9086.t1|Name=Ggra9086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=515bp
MPSGQTLRELLPTTEEPALITFSASSKEAPPVIDHTLTHKQLRTIVAHYA
TQLKEIPLNSAIAVVMPNGLPFVVSFLAITSISRVAAPLNPGYTADEFEF
YIEDAKVKAVLVLKDTAEDAPIRAACSKLKVPVMEFPADIVESAADTVPE
PFDEPNKDTIGMFLHTSGTTSRPKGVPLSHANLMTTVRNVAGTYKLKASD
RGLLVMPLFHVHGLMAGLLTPLATGGTVIIPPGGRFSASNFWPCFVGGGG
NWFTAVPTIHQILLARAEKDCPTPMPKLRFIRSCSASLAPAVLEGMEKTF
STVVLEAYAMTEAAHQMTSNPLPDVGPRKAGSVGLPQGGVSLSVRDENGL
EVKSGEVGEVCVKGENVMKGYTNSAANETAFFGEWFRTGDQGKLDSEGYL
TLTGRIKELVNRGGEKISPIEVDGALLSHPAVEQAVCFAVPDEKYGEEVN
AAVILKNDRKADEKEIIDFLKDKIAAFKIPKRLFFSDDLPRTATGKIQRR
IVAKHFLDKLNAGE*

spliced messenger RNA

>Ggra9086.t1 ID=Ggra9086.t1|Name=Ggra9086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000176_pilon:156785..158329+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCCGGTCAAACTCTGCGAGAATTACTGCCAACAACCGAGGAACC
TGCGTTGATAACGTTCTCGGCATCCTCTAAGGAAGCACCACCGGTCATAG
ACCACACGTTGACTCACAAACAGCTTCGAACCATAGTCGCCCATTATGCT
ACTCAACTAAAGGAAATCCCGCTCAACAGTGCAATAGCTGTGGTGATGCC
GAATGGGCTTCCGTTTGTGGTGTCATTTCTAGCTATCACCAGCATTTCTC
GCGTGGCAGCTCCCCTCAACCCTGGATACACTGCCGACGAGTTTGAATTC
TATATTGAAGATGCGAAAGTGAAGGCTGTCCTTGTTCTGAAAGACACAGC
TGAGGACGCTCCGATTCGGGCTGCATGCTCCAAGCTAAAGGTGCCAGTCA
TGGAATTCCCGGCAGATATTGTAGAATCTGCTGCTGACACCGTCCCCGAG
CCTTTTGATGAGCCGAACAAGGACACTATTGGCATGTTTTTACACACCTC
TGGAACTACGTCGCGCCCAAAAGGCGTGCCACTCTCCCACGCAAATCTGA
TGACCACCGTGCGGAATGTTGCGGGAACGTACAAACTAAAGGCATCGGAC
CGTGGGTTACTAGTAATGCCGTTATTCCATGTGCACGGACTTATGGCTGG
TTTGCTCACGCCTTTAGCCACCGGAGGGACGGTGATAATTCCTCCAGGGG
GGCGTTTCTCTGCCAGCAACTTCTGGCCTTGTTTCGTGGGCGGTGGTGGG
AACTGGTTCACGGCCGTGCCAACGATTCACCAGATTCTACTCGCGAGGGC
TGAAAAAGACTGCCCTACTCCGATGCCGAAGCTACGTTTCATTCGAAGTT
GCTCTGCCAGTCTTGCCCCCGCTGTGCTTGAAGGTATGGAAAAGACTTTC
TCAACTGTTGTGCTGGAGGCGTATGCTATGACTGAAGCGGCTCATCAAAT
GACAAGCAACCCGCTTCCTGATGTGGGACCCAGAAAGGCAGGCAGCGTCG
GTCTTCCACAGGGAGGAGTCTCTCTTTCTGTAAGGGATGAAAATGGTCTT
GAAGTGAAGTCTGGCGAGGTTGGGGAGGTTTGTGTGAAAGGTGAAAATGT
CATGAAGGGCTACACCAACAGTGCGGCGAATGAAACTGCGTTCTTTGGTG
AGTGGTTCCGCACGGGTGACCAGGGTAAATTAGACAGCGAGGGCTACTTA
ACGCTTACGGGAAGGATCAAAGAGCTTGTGAACCGCGGAGGTGAGAAAAT
TTCCCCGATTGAAGTTGACGGTGCTCTGCTATCGCATCCTGCTGTTGAAC
AAGCTGTTTGCTTCGCTGTTCCCGACGAGAAGTATGGAGAGGAGGTTAAT
GCCGCTGTGATCTTGAAAAACGATAGGAAGGCGGATGAGAAGGAGATCAT
AGATTTCTTGAAGGACAAAATCGCAGCTTTCAAGATACCGAAGCGGCTGT
TCTTCAGCGATGATCTGCCGAGGACAGCGACAGGCAAGATTCAAAGGCGG
ATTGTTGCCAAGCATTTCCTGGACAAATTGAACGCCGGGGAATAG

protein sequence of Ggra9086.t1

>Ggra9086.t1 ID=Ggra9086.t1|Name=Ggra9086.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=515bp
MPSGQTLRELLPTTEEPALITFSASSKEAPPVIDHTLTHKQLRTIVAHYA
TQLKEIPLNSAIAVVMPNGLPFVVSFLAITSISRVAAPLNPGYTADEFEF
YIEDAKVKAVLVLKDTAEDAPIRAACSKLKVPVMEFPADIVESAADTVPE
PFDEPNKDTIGMFLHTSGTTSRPKGVPLSHANLMTTVRNVAGTYKLKASD
RGLLVMPLFHVHGLMAGLLTPLATGGTVIIPPGGRFSASNFWPCFVGGGG
NWFTAVPTIHQILLARAEKDCPTPMPKLRFIRSCSASLAPAVLEGMEKTF
STVVLEAYAMTEAAHQMTSNPLPDVGPRKAGSVGLPQGGVSLSVRDENGL
EVKSGEVGEVCVKGENVMKGYTNSAANETAFFGEWFRTGDQGKLDSEGYL
TLTGRIKELVNRGGEKISPIEVDGALLSHPAVEQAVCFAVPDEKYGEEVN
AAVILKNDRKADEKEIIDFLKDKIAAFKIPKRLFFSDDLPRTATGKIQRR
IVAKHFLDKLNAGE*

mRNA from alignment at tig00000176_pilon:156785..158329+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9086.t1 ID=Ggra9086.t1|Name=Ggra9086.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1545bp|location=Sequence derived from alignment at tig00000176_pilon:156785..158329+ (Gracilaria gracilis GNS1m male)
ATGCCTTCCGGTCAAACTCTGCGAGAATTACTGCCAACAACCGAGGAACC
TGCGTTGATAACGTTCTCGGCATCCTCTAAGGAAGCACCACCGGTCATAG
ACCACACGTTGACTCACAAACAGCTTCGAACCATAGTCGCCCATTATGCT
ACTCAACTAAAGGAAATCCCGCTCAACAGTGCAATAGCTGTGGTGATGCC
GAATGGGCTTCCGTTTGTGGTGTCATTTCTAGCTATCACCAGCATTTCTC
GCGTGGCAGCTCCCCTCAACCCTGGATACACTGCCGACGAGTTTGAATTC
TATATTGAAGATGCGAAAGTGAAGGCTGTCCTTGTTCTGAAAGACACAGC
TGAGGACGCTCCGATTCGGGCTGCATGCTCCAAGCTAAAGGTGCCAGTCA
TGGAATTCCCGGCAGATATTGTAGAATCTGCTGCTGACACCGTCCCCGAG
CCTTTTGATGAGCCGAACAAGGACACTATTGGCATGTTTTTACACACCTC
TGGAACTACGTCGCGCCCAAAAGGCGTGCCACTCTCCCACGCAAATCTGA
TGACCACCGTGCGGAATGTTGCGGGAACGTACAAACTAAAGGCATCGGAC
CGTGGGTTACTAGTAATGCCGTTATTCCATGTGCACGGACTTATGGCTGG
TTTGCTCACGCCTTTAGCCACCGGAGGGACGGTGATAATTCCTCCAGGGG
GGCGTTTCTCTGCCAGCAACTTCTGGCCTTGTTTCGTGGGCGGTGGTGGG
AACTGGTTCACGGCCGTGCCAACGATTCACCAGATTCTACTCGCGAGGGC
TGAAAAAGACTGCCCTACTCCGATGCCGAAGCTACGTTTCATTCGAAGTT
GCTCTGCCAGTCTTGCCCCCGCTGTGCTTGAAGGTATGGAAAAGACTTTC
TCAACTGTTGTGCTGGAGGCGTATGCTATGACTGAAGCGGCTCATCAAAT
GACAAGCAACCCGCTTCCTGATGTGGGACCCAGAAAGGCAGGCAGCGTCG
GTCTTCCACAGGGAGGAGTCTCTCTTTCTGTAAGGGATGAAAATGGTCTT
GAAGTGAAGTCTGGCGAGGTTGGGGAGGTTTGTGTGAAAGGTGAAAATGT
CATGAAGGGCTACACCAACAGTGCGGCGAATGAAACTGCGTTCTTTGGTG
AGTGGTTCCGCACGGGTGACCAGGGTAAATTAGACAGCGAGGGCTACTTA
ACGCTTACGGGAAGGATCAAAGAGCTTGTGAACCGCGGAGGTGAGAAAAT
TTCCCCGATTGAAGTTGACGGTGCTCTGCTATCGCATCCTGCTGTTGAAC
AAGCTGTTTGCTTCGCTGTTCCCGACGAGAAGTATGGAGAGGAGGTTAAT
GCCGCTGTGATCTTGAAAAACGATAGGAAGGCGGATGAGAAGGAGATCAT
AGATTTCTTGAAGGACAAAATCGCAGCTTTCAAGATACCGAAGCGGCTGT
TCTTCAGCGATGATCTGCCGAGGACAGCGACAGGCAAGATTCAAAGGCGG
ATTGTTGCCAAGCATTTCCTGGACAAATTGAACGCCGGGGAATAG

Coding sequence (CDS) from alignment at tig00000176_pilon:156785..158329+

>Ggra9086.t1 ID=Ggra9086.t1|Name=Ggra9086.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1545bp|location=Sequence derived from alignment at tig00000176_pilon:156785..158329+ (Gracilaria gracilis GNS1m male)
ATGCCTTCCGGTCAAACTCTGCGAGAATTACTGCCAACAACCGAGGAACC
TGCGTTGATAACGTTCTCGGCATCCTCTAAGGAAGCACCACCGGTCATAG
ACCACACGTTGACTCACAAACAGCTTCGAACCATAGTCGCCCATTATGCT
ACTCAACTAAAGGAAATCCCGCTCAACAGTGCAATAGCTGTGGTGATGCC
GAATGGGCTTCCGTTTGTGGTGTCATTTCTAGCTATCACCAGCATTTCTC
GCGTGGCAGCTCCCCTCAACCCTGGATACACTGCCGACGAGTTTGAATTC
TATATTGAAGATGCGAAAGTGAAGGCTGTCCTTGTTCTGAAAGACACAGC
TGAGGACGCTCCGATTCGGGCTGCATGCTCCAAGCTAAAGGTGCCAGTCA
TGGAATTCCCGGCAGATATTGTAGAATCTGCTGCTGACACCGTCCCCGAG
CCTTTTGATGAGCCGAACAAGGACACTATTGGCATGTTTTTACACACCTC
TGGAACTACGTCGCGCCCAAAAGGCGTGCCACTCTCCCACGCAAATCTGA
TGACCACCGTGCGGAATGTTGCGGGAACGTACAAACTAAAGGCATCGGAC
CGTGGGTTACTAGTAATGCCGTTATTCCATGTGCACGGACTTATGGCTGG
TTTGCTCACGCCTTTAGCCACCGGAGGGACGGTGATAATTCCTCCAGGGG
GGCGTTTCTCTGCCAGCAACTTCTGGCCTTGTTTCGTGGGCGGTGGTGGG
AACTGGTTCACGGCCGTGCCAACGATTCACCAGATTCTACTCGCGAGGGC
TGAAAAAGACTGCCCTACTCCGATGCCGAAGCTACGTTTCATTCGAAGTT
GCTCTGCCAGTCTTGCCCCCGCTGTGCTTGAAGGTATGGAAAAGACTTTC
TCAACTGTTGTGCTGGAGGCGTATGCTATGACTGAAGCGGCTCATCAAAT
GACAAGCAACCCGCTTCCTGATGTGGGACCCAGAAAGGCAGGCAGCGTCG
GTCTTCCACAGGGAGGAGTCTCTCTTTCTGTAAGGGATGAAAATGGTCTT
GAAGTGAAGTCTGGCGAGGTTGGGGAGGTTTGTGTGAAAGGTGAAAATGT
CATGAAGGGCTACACCAACAGTGCGGCGAATGAAACTGCGTTCTTTGGTG
AGTGGTTCCGCACGGGTGACCAGGGTAAATTAGACAGCGAGGGCTACTTA
ACGCTTACGGGAAGGATCAAAGAGCTTGTGAACCGCGGAGGTGAGAAAAT
TTCCCCGATTGAAGTTGACGGTGCTCTGCTATCGCATCCTGCTGTTGAAC
AAGCTGTTTGCTTCGCTGTTCCCGACGAGAAGTATGGAGAGGAGGTTAAT
GCCGCTGTGATCTTGAAAAACGATAGGAAGGCGGATGAGAAGGAGATCAT
AGATTTCTTGAAGGACAAAATCGCAGCTTTCAAGATACCGAAGCGGCTGT
TCTTCAGCGATGATCTGCCGAGGACAGCGACAGGCAAGATTCAAAGGCGG
ATTGTTGCCAAGCATTTCCTGGACAAATTGAACGCCGGGGAATAG