Ggra9085.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9085.t1
Unique NameGgra9085.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:154496..155170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1117314.PCIT_11079
PFAMsSpond_N
Max annot lvl1236|Gammaproteobacteria
Evalue6.67e-16
EggNOG OGsKOG3539@1|root,32TPV@2|Bacteria,1N2ES@1224|Proteobacteria,1SM6W@1236|Gammaproteobacteria,2Q4H4@267888|Pseudoalteromonadaceae
DescriptionSpondin_N
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9085Ggra9085Gracilaria gracilis GNS1m malegenetig00000176_pilon 154496..155170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9085.t1.start1Ggra9085.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 154496..154498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9085.t1.CDS1Ggra9085.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 154496..155170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9085.t1.exon1Ggra9085.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 154496..155170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9085.t1.stop1Ggra9085.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 155168..155170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9085.t1Ggra9085.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 154496..155170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9085.t1 ID=Ggra9085.t1|Name=Ggra9085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp
MIRQVTVLFFALVVAQASASRSKRMCMGQADYIVNFTNLLTPARFGDSIP
EGGLVFSPLAGASHSNRISLLTVRSQASPQVEQIAETGQNGRFVTLAESL
VGKGVKNASAAMGPTMPGNYTALKFTVDCDHPFITVVGMIAPSPDWLVQI
SNINLVRRGYFLQRRSGRLIAYDAGTDDGADFTNPTDASLDMPTEPQKNI
APLVEDETDAFDGRFIGKYIITKV*
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spliced messenger RNA

>Ggra9085.t1 ID=Ggra9085.t1|Name=Ggra9085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000176_pilon:154496..155170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGTCAGGTCACTGTCCTGTTCTTTGCCCTCGTCGTCGCTCAGGC
GTCGGCTTCCAGGAGTAAGCGCATGTGCATGGGACAAGCAGACTACATTG
TCAACTTCACCAACTTGTTGACCCCGGCAAGATTTGGTGACTCTATCCCG
GAAGGAGGACTTGTATTCTCCCCTCTGGCCGGTGCTTCCCATTCCAACCG
TATCTCCCTTCTCACTGTCCGCAGCCAGGCCTCACCACAGGTTGAGCAGA
TCGCCGAGACGGGCCAGAACGGTCGATTCGTTACCCTTGCCGAAAGCCTT
GTCGGGAAGGGTGTGAAGAATGCTTCCGCCGCCATGGGACCAACCATGCC
CGGAAACTACACCGCGCTCAAGTTCACCGTTGATTGCGATCACCCGTTCA
TTACCGTCGTCGGTATGATTGCACCATCTCCTGACTGGTTGGTACAGATC
AGCAACATCAACCTGGTGCGAAGAGGCTACTTCCTCCAGAGGAGAAGCGG
CAGACTGATTGCGTATGACGCCGGTACCGACGATGGTGCTGACTTCACAA
ACCCGACTGACGCCTCGCTCGACATGCCAACTGAGCCGCAAAAGAATATT
GCCCCTCTTGTTGAGGATGAGACAGACGCGTTCGATGGTCGCTTCATCGG
AAAGTATATCATCACAAAGGTCTAA
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protein sequence of Ggra9085.t1

>Ggra9085.t1 ID=Ggra9085.t1|Name=Ggra9085.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MIRQVTVLFFALVVAQASASRSKRMCMGQADYIVNFTNLLTPARFGDSIP
EGGLVFSPLAGASHSNRISLLTVRSQASPQVEQIAETGQNGRFVTLAESL
VGKGVKNASAAMGPTMPGNYTALKFTVDCDHPFITVVGMIAPSPDWLVQI
SNINLVRRGYFLQRRSGRLIAYDAGTDDGADFTNPTDASLDMPTEPQKNI
APLVEDETDAFDGRFIGKYIITKV*
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mRNA from alignment at tig00000176_pilon:154496..155170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9085.t1 ID=Ggra9085.t1|Name=Ggra9085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000176_pilon:154496..155170+ (Gracilaria gracilis GNS1m male)
ATGATCCGTCAGGTCACTGTCCTGTTCTTTGCCCTCGTCGTCGCTCAGGC
GTCGGCTTCCAGGAGTAAGCGCATGTGCATGGGACAAGCAGACTACATTG
TCAACTTCACCAACTTGTTGACCCCGGCAAGATTTGGTGACTCTATCCCG
GAAGGAGGACTTGTATTCTCCCCTCTGGCCGGTGCTTCCCATTCCAACCG
TATCTCCCTTCTCACTGTCCGCAGCCAGGCCTCACCACAGGTTGAGCAGA
TCGCCGAGACGGGCCAGAACGGTCGATTCGTTACCCTTGCCGAAAGCCTT
GTCGGGAAGGGTGTGAAGAATGCTTCCGCCGCCATGGGACCAACCATGCC
CGGAAACTACACCGCGCTCAAGTTCACCGTTGATTGCGATCACCCGTTCA
TTACCGTCGTCGGTATGATTGCACCATCTCCTGACTGGTTGGTACAGATC
AGCAACATCAACCTGGTGCGAAGAGGCTACTTCCTCCAGAGGAGAAGCGG
CAGACTGATTGCGTATGACGCCGGTACCGACGATGGTGCTGACTTCACAA
ACCCGACTGACGCCTCGCTCGACATGCCAACTGAGCCGCAAAAGAATATT
GCCCCTCTTGTTGAGGATGAGACAGACGCGTTCGATGGTCGCTTCATCGG
AAAGTATATCATCACAAAGGTCTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:154496..155170+

>Ggra9085.t1 ID=Ggra9085.t1|Name=Ggra9085.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000176_pilon:154496..155170+ (Gracilaria gracilis GNS1m male)
ATGATCCGTCAGGTCACTGTCCTGTTCTTTGCCCTCGTCGTCGCTCAGGC
GTCGGCTTCCAGGAGTAAGCGCATGTGCATGGGACAAGCAGACTACATTG
TCAACTTCACCAACTTGTTGACCCCGGCAAGATTTGGTGACTCTATCCCG
GAAGGAGGACTTGTATTCTCCCCTCTGGCCGGTGCTTCCCATTCCAACCG
TATCTCCCTTCTCACTGTCCGCAGCCAGGCCTCACCACAGGTTGAGCAGA
TCGCCGAGACGGGCCAGAACGGTCGATTCGTTACCCTTGCCGAAAGCCTT
GTCGGGAAGGGTGTGAAGAATGCTTCCGCCGCCATGGGACCAACCATGCC
CGGAAACTACACCGCGCTCAAGTTCACCGTTGATTGCGATCACCCGTTCA
TTACCGTCGTCGGTATGATTGCACCATCTCCTGACTGGTTGGTACAGATC
AGCAACATCAACCTGGTGCGAAGAGGCTACTTCCTCCAGAGGAGAAGCGG
CAGACTGATTGCGTATGACGCCGGTACCGACGATGGTGCTGACTTCACAA
ACCCGACTGACGCCTCGCTCGACATGCCAACTGAGCCGCAAAAGAATATT
GCCCCTCTTGTTGAGGATGAGACAGACGCGTTCGATGGTCGCTTCATCGG
AAAGTATATCATCACAAAGGTCTAA
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