Ggra9082.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9082.t1
Unique NameGgra9082.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:145778..146783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9082Ggra9082Gracilaria gracilis GNS1m malegenetig00000176_pilon 145778..146783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1Ggra9082.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 145778..146783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1.CDS1Ggra9082.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 145778..145780 -
Ggra9082.t1.CDS2Ggra9082.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 145860..146783 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1.exon1Ggra9082.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 145778..145780 -
Ggra9082.t1.exon2Ggra9082.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 145860..146783 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1.stop1Ggra9082.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 145778..145780 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1.intron1Ggra9082.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 145781..145859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9082.t1.start1Ggra9082.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 146781..146783 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9082.t1 ID=Ggra9082.t1|Name=Ggra9082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MATKSLWLVLVSIVLFTSCESYTEVFSIAKDVEETSYYAGNIDSNFFIAK
KSTDCSFAWTSSAGSATGDDDNDQNREIFYDVLVGSDGLIYAAGTTKGNF
SFPEDEVPTLDAAVVVYDPADGTLVRQAQFDLDNGLDDVARAIVQKPDGT
LLVAVYGSPPNSQNTAVHATKVLEISPESLELVVRHTVQVQTTGAFASVT
GGPTILDMVYVESQEAVVAVGQILGRGLLFMFSLSTSTVVAQTEWGSIIG
NMQIGGLATDHNGAFFVTGSSIENVLQNGDLQSVTASEFHAYVLRYDNLL
LTEPELTW*
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spliced messenger RNA

>Ggra9082.t1 ID=Ggra9082.t1|Name=Ggra9082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000176_pilon:145778..146783- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACGAAAAGCCTTTGGTTGGTATTGGTTTCCATCGTTCTCTTCAC
TTCCTGTGAGTCCTACACAGAAGTATTTTCGATAGCGAAGGATGTGGAAG
AAACCAGCTATTACGCTGGGAATATAGACTCCAACTTTTTCATTGCGAAA
AAGAGTACTGACTGCTCGTTTGCGTGGACGAGCTCAGCTGGATCGGCAAC
CGGAGACGACGATAATGATCAGAACCGAGAGATCTTTTATGATGTTCTGG
TTGGGTCTGATGGTTTAATATATGCCGCTGGCACCACGAAAGGGAACTTT
TCGTTTCCAGAAGATGAAGTGCCCACGTTGGACGCCGCGGTCGTGGTATA
TGATCCGGCTGATGGCACGTTGGTGCGGCAGGCTCAATTTGACTTGGACA
ATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAGAAGCCAGACGGGACG
CTCCTGGTTGCTGTATACGGTTCCCCGCCCAACTCTCAGAACACGGCCGT
GCATGCAACCAAGGTTCTAGAGATATCACCGGAATCTCTAGAATTGGTGG
TTAGGCACACTGTTCAGGTACAGACCACCGGAGCGTTTGCGTCCGTCACT
GGTGGGCCTACCATCCTGGACATGGTGTATGTTGAGAGCCAGGAAGCTGT
GGTAGCCGTGGGTCAGATTCTTGGGAGAGGGCTATTGTTTATGTTCAGCC
TTTCCACTAGTACCGTTGTAGCCCAAACTGAATGGGGGAGCATTATTGGA
AATATGCAGATTGGAGGCTTGGCTACTGACCATAACGGTGCATTCTTTGT
GACGGGATCCAGCATTGAAAACGTTCTTCAAAACGGAGACTTGCAAAGTG
TTACTGCATCGGAATTTCATGCGTATGTGCTTCGGTATGACAATCTTCTG
CTGACCGAACCGGAGCTGACGTGGTGA
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protein sequence of Ggra9082.t1

>Ggra9082.t1 ID=Ggra9082.t1|Name=Ggra9082.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MATKSLWLVLVSIVLFTSCESYTEVFSIAKDVEETSYYAGNIDSNFFIAK
KSTDCSFAWTSSAGSATGDDDNDQNREIFYDVLVGSDGLIYAAGTTKGNF
SFPEDEVPTLDAAVVVYDPADGTLVRQAQFDLDNGLDDVARAIVQKPDGT
LLVAVYGSPPNSQNTAVHATKVLEISPESLELVVRHTVQVQTTGAFASVT
GGPTILDMVYVESQEAVVAVGQILGRGLLFMFSLSTSTVVAQTEWGSIIG
NMQIGGLATDHNGAFFVTGSSIENVLQNGDLQSVTASEFHAYVLRYDNLL
LTEPELTW*
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mRNA from alignment at tig00000176_pilon:145778..146783-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9082.t1 ID=Ggra9082.t1|Name=Ggra9082.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1006bp|location=Sequence derived from alignment at tig00000176_pilon:145778..146783- (Gracilaria gracilis GNS1m male)
ATGGCTACGAAAAGCCTTTGGTTGGTATTGGTTTCCATCGTTCTCTTCAC
TTCCTGTGAGTCCTACACAGAAGTATTTTCGATAGCGAAGGATGTGGAAG
AAACCAGCTATTACGCTGGGAATATAGACTCCAACTTTTTCATTGCGAAA
AAGAGTACTGACTGCTCGTTTGCGTGGACGAGCTCAGCTGGATCGGCAAC
CGGAGACGACGATAATGATCAGAACCGAGAGATCTTTTATGATGTTCTGG
TTGGGTCTGATGGTTTAATATATGCCGCTGGCACCACGAAAGGGAACTTT
TCGTTTCCAGAAGATGAAGTGCCCACGTTGGACGCCGCGGTCGTGGTATA
TGATCCGGCTGATGGCACGTTGGTGCGGCAGGCTCAATTTGACTTGGACA
ATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAGAAGCCAGACGGGACG
CTCCTGGTTGCTGTATACGGTTCCCCGCCCAACTCTCAGAACACGGCCGT
GCATGCAACCAAGGTTCTAGAGATATCACCGGAATCTCTAGAATTGGTGG
TTAGGCACACTGTTCAGGTACAGACCACCGGAGCGTTTGCGTCCGTCACT
GGTGGGCCTACCATCCTGGACATGGTGTATGTTGAGAGCCAGGAAGCTGT
GGTAGCCGTGGGTCAGATTCTTGGGAGAGGGCTATTGTTTATGTTCAGCC
TTTCCACTAGTACCGTTGTAGCCCAAACTGAATGGGGGAGCATTATTGGA
AATATGCAGATTGGAGGCTTGGCTACTGACCATAACGGTGCATTCTTTGT
GACGGGATCCAGCATTGAAAACGTTCTTCAAAACGGAGACTTGCAAAGTG
TTACTGCATCGGAATTTCATGCGTATGTGCTTCGGTATGACAATCTTCTG
CTGACCGAACCGGAGCTGACGTGGGTGAGGCAATTGGCTGGATCAGGTAG
CAGCCAGACTGGAGATGACGTTTCCATAGATCCGACTACTGGAGCTGTTG
TAGTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:145778..146783-

>Ggra9082.t1 ID=Ggra9082.t1|Name=Ggra9082.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000176_pilon:145778..146783- (Gracilaria gracilis GNS1m male)
ATGGCTACGAAAAGCCTTTGGTTGGTATTGGTTTCCATCGTTCTCTTCAC
TTCCTGTGAGTCCTACACAGAAGTATTTTCGATAGCGAAGGATGTGGAAG
AAACCAGCTATTACGCTGGGAATATAGACTCCAACTTTTTCATTGCGAAA
AAGAGTACTGACTGCTCGTTTGCGTGGACGAGCTCAGCTGGATCGGCAAC
CGGAGACGACGATAATGATCAGAACCGAGAGATCTTTTATGATGTTCTGG
TTGGGTCTGATGGTTTAATATATGCCGCTGGCACCACGAAAGGGAACTTT
TCGTTTCCAGAAGATGAAGTGCCCACGTTGGACGCCGCGGTCGTGGTATA
TGATCCGGCTGATGGCACGTTGGTGCGGCAGGCTCAATTTGACTTGGACA
ATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAGAAGCCAGACGGGACG
CTCCTGGTTGCTGTATACGGTTCCCCGCCCAACTCTCAGAACACGGCCGT
GCATGCAACCAAGGTTCTAGAGATATCACCGGAATCTCTAGAATTGGTGG
TTAGGCACACTGTTCAGGTACAGACCACCGGAGCGTTTGCGTCCGTCACT
GGTGGGCCTACCATCCTGGACATGGTGTATGTTGAGAGCCAGGAAGCTGT
GGTAGCCGTGGGTCAGATTCTTGGGAGAGGGCTATTGTTTATGTTCAGCC
TTTCCACTAGTACCGTTGTAGCCCAAACTGAATGGGGGAGCATTATTGGA
AATATGCAGATTGGAGGCTTGGCTACTGACCATAACGGTGCATTCTTTGT
GACGGGATCCAGCATTGAAAACGTTCTTCAAAACGGAGACTTGCAAAGTG
TTACTGCATCGGAATTTCATGCGTATGTGCTTCGGTATGACAATCTTCTG
CTGACCGAACCGGAGCTGACGTGGTGA
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