Ggra9076.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9076.t1
Unique NameGgra9076.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:122009..122733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702569.1
Preferred nameRPS8
PFAMsRibosomal_S8e
Max annot lvl2759|Eukaryota
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue1.11e-81
EggNOG OGsCOG2007@1|root,KOG3283@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9076Ggra9076Gracilaria gracilis GNS1m malegenetig00000176_pilon 122009..122733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1Ggra9076.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 122009..122733 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1.start1Ggra9076.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 122009..122011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1.CDS1Ggra9076.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 122009..122012 +
Ggra9076.t1.CDS2Ggra9076.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 122123..122733 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1.exon1Ggra9076.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 122009..122012 +
Ggra9076.t1.exon2Ggra9076.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 122123..122733 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1.intron1Ggra9076.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 122013..122122 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9076.t1.stop1Ggra9076.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 122731..122733 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9076.t1 ID=Ggra9076.t1|Name=Ggra9076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MGISRDSRHKRRLTGGKHPYFRKKRKYELGRQPALTKLGTKLVRPVRVRG
GNLKMRGLRLETGNFAWGSEGIAHKSRILNVVYNASNNELVRTNTLVKGC
IVQIDATPFRRYYRNYYGIDIGKKKAGENEGEAISAKKAEKQTKRAADRL
DLDEGVKELFQSGRLLAALSSRPGQCGRADGYVLEGKELEFYSRSMQKKK
KAGK*
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spliced messenger RNA

>Ggra9076.t1 ID=Ggra9076.t1|Name=Ggra9076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000176_pilon:122009..122733+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTATTTCGCGCGATTCCCGCCATAAGCGTCGCCTCACGGGTGGAAA
GCACCCCTACTTCCGCAAAAAGAGAAAGTATGAACTCGGCCGCCAGCCGG
CGCTTACTAAGCTCGGAACCAAGCTCGTCCGTCCAGTTCGCGTTCGCGGC
GGAAACCTCAAGATGCGCGGCCTGCGTCTGGAGACTGGAAACTTTGCATG
GGGGTCAGAAGGTATCGCGCATAAATCCCGTATCCTCAACGTTGTGTACA
ACGCCTCCAACAACGAGCTTGTACGTACCAACACCCTAGTCAAGGGTTGC
ATTGTGCAGATTGATGCCACACCTTTCCGTCGTTACTATCGCAACTACTA
TGGTATTGATATCGGGAAGAAGAAGGCTGGCGAGAATGAGGGTGAGGCGA
TCTCAGCAAAGAAGGCCGAAAAGCAGACCAAGAGGGCCGCTGATCGCCTG
GATTTGGACGAAGGCGTCAAGGAGCTTTTCCAAAGCGGTCGCTTGCTTGC
TGCTCTTTCATCGCGCCCTGGTCAGTGTGGAAGAGCAGACGGCTACGTGT
TAGAAGGGAAAGAGTTGGAGTTTTACTCTCGCTCTATGCAAAAGAAGAAG
AAGGCTGGCAAGTAA
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protein sequence of Ggra9076.t1

>Ggra9076.t1 ID=Ggra9076.t1|Name=Ggra9076.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MGISRDSRHKRRLTGGKHPYFRKKRKYELGRQPALTKLGTKLVRPVRVRG
GNLKMRGLRLETGNFAWGSEGIAHKSRILNVVYNASNNELVRTNTLVKGC
IVQIDATPFRRYYRNYYGIDIGKKKAGENEGEAISAKKAEKQTKRAADRL
DLDEGVKELFQSGRLLAALSSRPGQCGRADGYVLEGKELEFYSRSMQKKK
KAGK*
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mRNA from alignment at tig00000176_pilon:122009..122733+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9076.t1 ID=Ggra9076.t1|Name=Ggra9076.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=725bp|location=Sequence derived from alignment at tig00000176_pilon:122009..122733+ (Gracilaria gracilis GNS1m male)
ATGGGTACGTTCCGGATCGTCCCCCCTCTTACTCTCCATTAGCCCCCCTC
AGCTCGCTCTCTTTCCCGCACCGTTGCTAACCTTGTTTGTCAATCGTTCA
ATTGCTCCCTGTAGGTATTTCGCGCGATTCCCGCCATAAGCGTCGCCTCA
CGGGTGGAAAGCACCCCTACTTCCGCAAAAAGAGAAAGTATGAACTCGGC
CGCCAGCCGGCGCTTACTAAGCTCGGAACCAAGCTCGTCCGTCCAGTTCG
CGTTCGCGGCGGAAACCTCAAGATGCGCGGCCTGCGTCTGGAGACTGGAA
ACTTTGCATGGGGGTCAGAAGGTATCGCGCATAAATCCCGTATCCTCAAC
GTTGTGTACAACGCCTCCAACAACGAGCTTGTACGTACCAACACCCTAGT
CAAGGGTTGCATTGTGCAGATTGATGCCACACCTTTCCGTCGTTACTATC
GCAACTACTATGGTATTGATATCGGGAAGAAGAAGGCTGGCGAGAATGAG
GGTGAGGCGATCTCAGCAAAGAAGGCCGAAAAGCAGACCAAGAGGGCCGC
TGATCGCCTGGATTTGGACGAAGGCGTCAAGGAGCTTTTCCAAAGCGGTC
GCTTGCTTGCTGCTCTTTCATCGCGCCCTGGTCAGTGTGGAAGAGCAGAC
GGCTACGTGTTAGAAGGGAAAGAGTTGGAGTTTTACTCTCGCTCTATGCA
AAAGAAGAAGAAGGCTGGCAAGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:122009..122733+

>Ggra9076.t1 ID=Ggra9076.t1|Name=Ggra9076.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000176_pilon:122009..122733+ (Gracilaria gracilis GNS1m male)
ATGGGTATTTCGCGCGATTCCCGCCATAAGCGTCGCCTCACGGGTGGAAA
GCACCCCTACTTCCGCAAAAAGAGAAAGTATGAACTCGGCCGCCAGCCGG
CGCTTACTAAGCTCGGAACCAAGCTCGTCCGTCCAGTTCGCGTTCGCGGC
GGAAACCTCAAGATGCGCGGCCTGCGTCTGGAGACTGGAAACTTTGCATG
GGGGTCAGAAGGTATCGCGCATAAATCCCGTATCCTCAACGTTGTGTACA
ACGCCTCCAACAACGAGCTTGTACGTACCAACACCCTAGTCAAGGGTTGC
ATTGTGCAGATTGATGCCACACCTTTCCGTCGTTACTATCGCAACTACTA
TGGTATTGATATCGGGAAGAAGAAGGCTGGCGAGAATGAGGGTGAGGCGA
TCTCAGCAAAGAAGGCCGAAAAGCAGACCAAGAGGGCCGCTGATCGCCTG
GATTTGGACGAAGGCGTCAAGGAGCTTTTCCAAAGCGGTCGCTTGCTTGC
TGCTCTTTCATCGCGCCCTGGTCAGTGTGGAAGAGCAGACGGCTACGTGT
TAGAAGGGAAAGAGTTGGAGTTTTACTCTCGCTCTATGCAAAAGAAGAAG
AAGGCTGGCAAGTAA
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