Ggra9073.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9073.t1
Unique NameGgra9073.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:110207..110980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002611467.1
Max annot lvl33208|Metazoa
Evalue3.7e-89
EggNOG OGs28MRV@1|root,2QUA2@2759|Eukaryota,39UWM@33154|Opisthokonta,3BQV0@33208|Metazoa,3DCWW@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9073Ggra9073Gracilaria gracilis GNS1m malegenetig00000176_pilon 110207..110980 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9073.t1.stop1Ggra9073.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 110207..110209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9073.t1.CDS1Ggra9073.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 110207..110980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9073.t1.exon1Ggra9073.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 110207..110980 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9073.t1.start1Ggra9073.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 110978..110980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9073.t1Ggra9073.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 110207..110980 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9073.t1 ID=Ggra9073.t1|Name=Ggra9073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MKPEHHLTAEEVRKEIQLLQQKHGFIRPLRSTIDPKRPWRTGTPNYDVAD
LLYFRGKIMNHEPHSLESVVENAVKKWEMEATHLDFEHWTAVDHDSYRVC
ANGAKSFVGEEGARAGNYNWLLAGVDKQLYDNELETFHSSHELFRGAFLG
GFPWEVLKVFSAPPRVSFSWRHWATFHKEGEYKGRKGDGEKYEMFGFGVV
DLNEDGKIKSIEIYYKPEEFLKALHGEIAPSRLSNGQSLMGSGCPFLERD
TNTQGRS*
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spliced messenger RNA

>Ggra9073.t1 ID=Ggra9073.t1|Name=Ggra9073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000176_pilon:110207..110980- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGAGCATCACTTAACCGCAGAGGAAGTGCGAAAGGAGATACA
ACTGTTACAACAGAAGCACGGCTTTATTAGACCACTACGCTCCACAATCG
ACCCCAAGCGTCCATGGAGAACTGGTACCCCTAATTATGATGTTGCTGAT
CTCCTGTACTTTCGAGGCAAGATTATGAATCATGAACCACACTCGCTGGA
GAGCGTTGTCGAGAATGCAGTAAAGAAATGGGAGATGGAGGCTACTCATT
TAGACTTTGAACATTGGACTGCTGTGGATCATGATTCGTATCGCGTTTGC
GCCAATGGAGCGAAGAGCTTTGTCGGGGAAGAAGGCGCTCGAGCTGGAAA
CTACAACTGGCTCCTTGCCGGCGTTGACAAACAACTCTATGACAACGAGC
TTGAGACGTTTCACAGCTCACACGAGCTGTTCCGTGGCGCTTTTCTCGGT
GGATTTCCGTGGGAAGTGCTCAAGGTGTTCTCTGCTCCGCCGCGCGTGTC
CTTTTCTTGGCGCCACTGGGCTACGTTTCACAAGGAAGGTGAGTACAAGG
GGCGGAAAGGTGACGGCGAAAAGTACGAAATGTTTGGCTTCGGTGTGGTG
GACCTCAACGAAGATGGGAAGATAAAAAGCATTGAGATATACTACAAGCC
CGAGGAGTTCCTGAAAGCGCTACATGGTGAGATTGCTCCTTCTCGTCTCA
GCAACGGACAGAGTCTGATGGGGAGTGGATGCCCCTTTTTGGAGCGTGAT
ACTAATACGCAGGGCCGAAGCTAA
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protein sequence of Ggra9073.t1

>Ggra9073.t1 ID=Ggra9073.t1|Name=Ggra9073.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MKPEHHLTAEEVRKEIQLLQQKHGFIRPLRSTIDPKRPWRTGTPNYDVAD
LLYFRGKIMNHEPHSLESVVENAVKKWEMEATHLDFEHWTAVDHDSYRVC
ANGAKSFVGEEGARAGNYNWLLAGVDKQLYDNELETFHSSHELFRGAFLG
GFPWEVLKVFSAPPRVSFSWRHWATFHKEGEYKGRKGDGEKYEMFGFGVV
DLNEDGKIKSIEIYYKPEEFLKALHGEIAPSRLSNGQSLMGSGCPFLERD
TNTQGRS*
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mRNA from alignment at tig00000176_pilon:110207..110980-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9073.t1 ID=Ggra9073.t1|Name=Ggra9073.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000176_pilon:110207..110980- (Gracilaria gracilis GNS1m male)
ATGAAGCCCGAGCATCACTTAACCGCAGAGGAAGTGCGAAAGGAGATACA
ACTGTTACAACAGAAGCACGGCTTTATTAGACCACTACGCTCCACAATCG
ACCCCAAGCGTCCATGGAGAACTGGTACCCCTAATTATGATGTTGCTGAT
CTCCTGTACTTTCGAGGCAAGATTATGAATCATGAACCACACTCGCTGGA
GAGCGTTGTCGAGAATGCAGTAAAGAAATGGGAGATGGAGGCTACTCATT
TAGACTTTGAACATTGGACTGCTGTGGATCATGATTCGTATCGCGTTTGC
GCCAATGGAGCGAAGAGCTTTGTCGGGGAAGAAGGCGCTCGAGCTGGAAA
CTACAACTGGCTCCTTGCCGGCGTTGACAAACAACTCTATGACAACGAGC
TTGAGACGTTTCACAGCTCACACGAGCTGTTCCGTGGCGCTTTTCTCGGT
GGATTTCCGTGGGAAGTGCTCAAGGTGTTCTCTGCTCCGCCGCGCGTGTC
CTTTTCTTGGCGCCACTGGGCTACGTTTCACAAGGAAGGTGAGTACAAGG
GGCGGAAAGGTGACGGCGAAAAGTACGAAATGTTTGGCTTCGGTGTGGTG
GACCTCAACGAAGATGGGAAGATAAAAAGCATTGAGATATACTACAAGCC
CGAGGAGTTCCTGAAAGCGCTACATGGTGAGATTGCTCCTTCTCGTCTCA
GCAACGGACAGAGTCTGATGGGGAGTGGATGCCCCTTTTTGGAGCGTGAT
ACTAATACGCAGGGCCGAAGCTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:110207..110980-

>Ggra9073.t1 ID=Ggra9073.t1|Name=Ggra9073.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000176_pilon:110207..110980- (Gracilaria gracilis GNS1m male)
ATGAAGCCCGAGCATCACTTAACCGCAGAGGAAGTGCGAAAGGAGATACA
ACTGTTACAACAGAAGCACGGCTTTATTAGACCACTACGCTCCACAATCG
ACCCCAAGCGTCCATGGAGAACTGGTACCCCTAATTATGATGTTGCTGAT
CTCCTGTACTTTCGAGGCAAGATTATGAATCATGAACCACACTCGCTGGA
GAGCGTTGTCGAGAATGCAGTAAAGAAATGGGAGATGGAGGCTACTCATT
TAGACTTTGAACATTGGACTGCTGTGGATCATGATTCGTATCGCGTTTGC
GCCAATGGAGCGAAGAGCTTTGTCGGGGAAGAAGGCGCTCGAGCTGGAAA
CTACAACTGGCTCCTTGCCGGCGTTGACAAACAACTCTATGACAACGAGC
TTGAGACGTTTCACAGCTCACACGAGCTGTTCCGTGGCGCTTTTCTCGGT
GGATTTCCGTGGGAAGTGCTCAAGGTGTTCTCTGCTCCGCCGCGCGTGTC
CTTTTCTTGGCGCCACTGGGCTACGTTTCACAAGGAAGGTGAGTACAAGG
GGCGGAAAGGTGACGGCGAAAAGTACGAAATGTTTGGCTTCGGTGTGGTG
GACCTCAACGAAGATGGGAAGATAAAAAGCATTGAGATATACTACAAGCC
CGAGGAGTTCCTGAAAGCGCTACATGGTGAGATTGCTCCTTCTCGTCTCA
GCAACGGACAGAGTCTGATGGGGAGTGGATGCCCCTTTTTGGAGCGTGAT
ACTAATACGCAGGGCCGAAGCTAA
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