Ggra9065.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9065.t1
Unique NameGgra9065.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:76396..76980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704631.1
PFAMsRibosomal_S7
Max annot lvl2759|Eukaryota
KEGG koko:K02989
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue2.12e-110
EggNOG OGsCOG0049@1|root,KOG3291@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9065Ggra9065Gracilaria gracilis GNS1m malegenetig00000176_pilon 76396..76980 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9065.t1.stop1Ggra9065.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 76396..76398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9065.t1.CDS1Ggra9065.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 76396..76980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9065.t1.exon1Ggra9065.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 76396..76980 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9065.t1.start1Ggra9065.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 76978..76980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9065.t1Ggra9065.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 76396..76980 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9065.t1 ID=Ggra9065.t1|Name=Ggra9065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKR
FRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQ
VLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGARE
AAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*
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spliced messenger RNA

>Ggra9065.t1 ID=Ggra9065.t1|Name=Ggra9065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000176_pilon:76396..76980- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTCGTCAGTGAAGTTAAGCTCTTCAACAGATGGTCGTTTGAAGA
CGTTCGTGTTGAAGACATCTGTCTCAATGATTACATCGCCGTCAACCAAC
GCAGCGCCGTCTATCTTCCACATACAGCCGGTCGATACAACGCCAAGCGG
TTCCGGAAAGCGCAATGTCCCATCGTCGAACGTCTCGTGTGTTCGCTTAT
GATGCACGGTAGGAACAACGGTAAGAAGATCATGGCAGTTCGTATTGTCA
AGCATTGTTTCGAAATCATTCACTTGCTTACGGATCAGAACCCGATCCAA
GTACTTGTGGAGGCCGTTGTCAACTCAGGTCCCAGAGAAGATTCTACTCG
TATTGGATCGGCCGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAATGTCGCCCTGTATCTGCTGTGCACCGGTGCTCGTGAG
GCTGCTTTCCGATCGATTAAGACAATTGCAGAGTGTCTGGCTGATGAGCT
TATTAACGCCGCTAAGGGATCAAGCAATTCCTATGCTATCAAGAAGAAGG
ACGAAGTAGAACGTGTGGCAAAGGCCAATCGTTAA
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protein sequence of Ggra9065.t1

>Ggra9065.t1 ID=Ggra9065.t1|Name=Ggra9065.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MAVVSEVKLFNRWSFEDVRVEDICLNDYIAVNQRSAVYLPHTAGRYNAKR
FRKAQCPIVERLVCSLMMHGRNNGKKIMAVRIVKHCFEIIHLLTDQNPIQ
VLVEAVVNSGPREDSTRIGSAGTVRRQAVDVSPMRRINVALYLLCTGARE
AAFRSIKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR*
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mRNA from alignment at tig00000176_pilon:76396..76980-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9065.t1 ID=Ggra9065.t1|Name=Ggra9065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000176_pilon:76396..76980- (Gracilaria gracilis GNS1m male)
ATGGCAGTCGTCAGTGAAGTTAAGCTCTTCAACAGATGGTCGTTTGAAGA
CGTTCGTGTTGAAGACATCTGTCTCAATGATTACATCGCCGTCAACCAAC
GCAGCGCCGTCTATCTTCCACATACAGCCGGTCGATACAACGCCAAGCGG
TTCCGGAAAGCGCAATGTCCCATCGTCGAACGTCTCGTGTGTTCGCTTAT
GATGCACGGTAGGAACAACGGTAAGAAGATCATGGCAGTTCGTATTGTCA
AGCATTGTTTCGAAATCATTCACTTGCTTACGGATCAGAACCCGATCCAA
GTACTTGTGGAGGCCGTTGTCAACTCAGGTCCCAGAGAAGATTCTACTCG
TATTGGATCGGCCGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAATGTCGCCCTGTATCTGCTGTGCACCGGTGCTCGTGAG
GCTGCTTTCCGATCGATTAAGACAATTGCAGAGTGTCTGGCTGATGAGCT
TATTAACGCCGCTAAGGGATCAAGCAATTCCTATGCTATCAAGAAGAAGG
ACGAAGTAGAACGTGTGGCAAAGGCCAATCGTTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:76396..76980-

>Ggra9065.t1 ID=Ggra9065.t1|Name=Ggra9065.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000176_pilon:76396..76980- (Gracilaria gracilis GNS1m male)
ATGGCAGTCGTCAGTGAAGTTAAGCTCTTCAACAGATGGTCGTTTGAAGA
CGTTCGTGTTGAAGACATCTGTCTCAATGATTACATCGCCGTCAACCAAC
GCAGCGCCGTCTATCTTCCACATACAGCCGGTCGATACAACGCCAAGCGG
TTCCGGAAAGCGCAATGTCCCATCGTCGAACGTCTCGTGTGTTCGCTTAT
GATGCACGGTAGGAACAACGGTAAGAAGATCATGGCAGTTCGTATTGTCA
AGCATTGTTTCGAAATCATTCACTTGCTTACGGATCAGAACCCGATCCAA
GTACTTGTGGAGGCCGTTGTCAACTCAGGTCCCAGAGAAGATTCTACTCG
TATTGGATCGGCCGGTACCGTTCGTCGTCAGGCTGTTGATGTCTCTCCTA
TGCGTCGCATTAATGTCGCCCTGTATCTGCTGTGCACCGGTGCTCGTGAG
GCTGCTTTCCGATCGATTAAGACAATTGCAGAGTGTCTGGCTGATGAGCT
TATTAACGCCGCTAAGGGATCAAGCAATTCCTATGCTATCAAGAAGAAGG
ACGAAGTAGAACGTGTGGCAAAGGCCAATCGTTAA
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