Ggra9063.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9063.t1
Unique Name	Ggra9063.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	478

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:70465..71898 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1128427.KB904821_gene3606
Preferred name	ffh
PFAMs	SRP54,SRP54_N,SRP_SPB
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03106
KEGG TC	3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
Evalue	3.07e-167
EggNOG OGs	COG0541@1\|root,COG0541@2\|Bacteria,1FZYW@1117\|Cyanobacteria,1H79R@1150\|Oscillatoriales
EC	3.6.5.4
Description	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9063	Ggra9063	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 70465..71898 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9063.t1.start1	Ggra9063.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 70465..70467 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9063.t1.CDS1	Ggra9063.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 70465..71898 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9063.t1.exon1	Ggra9063.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 70465..71898 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9063.t1.stop1	Ggra9063.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 71896..71898 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9063.t1	Ggra9063.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 70465..71898 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:70465..71898+
coding sequence from alignment at tig00000176_pilon:70465..71898+

mRNA sequence

>Ggra9063.t1 ID=Ggra9063.t1|Name=Ggra9063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MLFDSLTEKMEETVRRMRGVDKITDKNVAGAMKQVKRALLDADVNLRVVN
SLTKQIKRRAIGEEVTPGVKPGQMLIKIMHEELTAIMGKDQAPLARRMDG
KPTVILLAGLQGAGKTTAAAKLALYCLKEKRSVMLIAGDVYRPAAIDQLK
TLGTSIEVDVFSLGTEADPRDIVRKGIEKGVNDSIDTLIIDTAGRQVIDS
KLMKELKDIKTISSADETLLVVDAMTGQEAATLTKTFNEEVGITGAILTK
LDGDTRGGAALSVQQVAGAPIKFTGVGERVEKLQPFIPERMASRILGMGD
VLTFVEKAQEEMDEKEAEKMTRRMMEAKFDFNDFLKQTKMISTMGSLAGV
MKMLPGVGSISSSKMAQAEAKLKLADSLIKSMTIQERTNPELLHSGASAR
SRLARISKGAGRSKNEAEDLVSEFRKMRDMMSRMSRKMMDSPAGPDGAQG
QSVGNRSQRRKSGKKKAQKKTAKRGFG*

spliced messenger RNA

>Ggra9063.t1 ID=Ggra9063.t1|Name=Ggra9063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000176_pilon:70465..71898+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTCGATTCTTTAACCGAGAAGATGGAAGAAACTGTCAGGAGAAT
GCGGGGAGTCGACAAAATCACGGACAAGAATGTTGCCGGTGCGATGAAAC
AGGTGAAACGCGCGTTGCTTGATGCGGACGTCAACTTGCGTGTTGTAAAT
TCATTAACCAAGCAGATAAAACGAAGAGCGATTGGAGAAGAAGTAACCCC
GGGCGTGAAACCCGGACAAATGCTGATCAAGATTATGCATGAGGAACTGA
CTGCGATAATGGGAAAGGACCAGGCCCCACTTGCGAGAAGGATGGATGGA
AAGCCGACAGTTATTTTGTTGGCAGGTCTACAGGGAGCCGGAAAGACTAC
CGCAGCCGCTAAACTTGCGTTGTATTGCTTGAAGGAAAAACGCTCAGTCA
TGCTAATTGCAGGTGATGTGTACAGGCCTGCTGCCATTGACCAGCTGAAG
ACTTTAGGAACTTCAATTGAGGTGGACGTTTTTAGCTTAGGCACAGAAGC
AGATCCACGAGACATTGTCCGAAAAGGGATTGAGAAAGGTGTGAACGATA
GCATTGACACGCTAATCATCGATACCGCTGGTCGTCAAGTAATTGACTCT
AAACTCATGAAGGAATTGAAGGATATCAAGACAATCAGCAGCGCAGATGA
AACTCTGCTCGTCGTAGATGCAATGACTGGGCAAGAAGCTGCGACGTTGA
CTAAGACTTTCAACGAAGAGGTAGGTATCACGGGGGCAATACTCACTAAA
CTAGACGGTGACACCCGAGGTGGTGCAGCCTTATCTGTACAACAAGTCGC
CGGGGCCCCTATTAAGTTCACTGGTGTAGGTGAGCGGGTTGAAAAGCTAC
AGCCATTCATTCCAGAACGTATGGCATCGAGAATTCTTGGAATGGGCGAT
GTTCTCACGTTTGTCGAGAAGGCCCAGGAAGAAATGGATGAAAAAGAAGC
TGAAAAGATGACAAGGCGCATGATGGAGGCTAAGTTTGATTTCAATGACT
TTCTTAAACAAACAAAGATGATCTCGACCATGGGCTCACTCGCTGGGGTG
ATGAAGATGTTACCAGGTGTTGGTTCAATATCATCGTCAAAGATGGCCCA
AGCAGAAGCAAAGCTGAAGCTTGCCGACAGTCTGATCAAATCTATGACTA
TCCAAGAGCGTACGAACCCAGAACTTCTTCACTCCGGTGCCTCCGCTCGC
AGCAGATTAGCGCGAATTTCAAAAGGTGCGGGGAGGTCAAAGAATGAGGC
AGAAGACTTGGTCAGTGAGTTTAGGAAAATGAGGGATATGATGTCACGAA
TGAGCAGAAAAATGATGGACAGTCCAGCTGGTCCGGACGGCGCACAAGGT
CAGTCGGTGGGAAACAGATCACAGCGACGAAAGTCCGGTAAAAAGAAGGC
TCAGAAGAAAACGGCCAAACGCGGCTTCGGCTAA

protein sequence of Ggra9063.t1

>Ggra9063.t1 ID=Ggra9063.t1|Name=Ggra9063.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MLFDSLTEKMEETVRRMRGVDKITDKNVAGAMKQVKRALLDADVNLRVVN
SLTKQIKRRAIGEEVTPGVKPGQMLIKIMHEELTAIMGKDQAPLARRMDG
KPTVILLAGLQGAGKTTAAAKLALYCLKEKRSVMLIAGDVYRPAAIDQLK
TLGTSIEVDVFSLGTEADPRDIVRKGIEKGVNDSIDTLIIDTAGRQVIDS
KLMKELKDIKTISSADETLLVVDAMTGQEAATLTKTFNEEVGITGAILTK
LDGDTRGGAALSVQQVAGAPIKFTGVGERVEKLQPFIPERMASRILGMGD
VLTFVEKAQEEMDEKEAEKMTRRMMEAKFDFNDFLKQTKMISTMGSLAGV
MKMLPGVGSISSSKMAQAEAKLKLADSLIKSMTIQERTNPELLHSGASAR
SRLARISKGAGRSKNEAEDLVSEFRKMRDMMSRMSRKMMDSPAGPDGAQG
QSVGNRSQRRKSGKKKAQKKTAKRGFG*

mRNA from alignment at tig00000176_pilon:70465..71898+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9063.t1 ID=Ggra9063.t1|Name=Ggra9063.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000176_pilon:70465..71898+ (Gracilaria gracilis GNS1m male)
ATGCTCTTCGATTCTTTAACCGAGAAGATGGAAGAAACTGTCAGGAGAAT
GCGGGGAGTCGACAAAATCACGGACAAGAATGTTGCCGGTGCGATGAAAC
AGGTGAAACGCGCGTTGCTTGATGCGGACGTCAACTTGCGTGTTGTAAAT
TCATTAACCAAGCAGATAAAACGAAGAGCGATTGGAGAAGAAGTAACCCC
GGGCGTGAAACCCGGACAAATGCTGATCAAGATTATGCATGAGGAACTGA
CTGCGATAATGGGAAAGGACCAGGCCCCACTTGCGAGAAGGATGGATGGA
AAGCCGACAGTTATTTTGTTGGCAGGTCTACAGGGAGCCGGAAAGACTAC
CGCAGCCGCTAAACTTGCGTTGTATTGCTTGAAGGAAAAACGCTCAGTCA
TGCTAATTGCAGGTGATGTGTACAGGCCTGCTGCCATTGACCAGCTGAAG
ACTTTAGGAACTTCAATTGAGGTGGACGTTTTTAGCTTAGGCACAGAAGC
AGATCCACGAGACATTGTCCGAAAAGGGATTGAGAAAGGTGTGAACGATA
GCATTGACACGCTAATCATCGATACCGCTGGTCGTCAAGTAATTGACTCT
AAACTCATGAAGGAATTGAAGGATATCAAGACAATCAGCAGCGCAGATGA
AACTCTGCTCGTCGTAGATGCAATGACTGGGCAAGAAGCTGCGACGTTGA
CTAAGACTTTCAACGAAGAGGTAGGTATCACGGGGGCAATACTCACTAAA
CTAGACGGTGACACCCGAGGTGGTGCAGCCTTATCTGTACAACAAGTCGC
CGGGGCCCCTATTAAGTTCACTGGTGTAGGTGAGCGGGTTGAAAAGCTAC
AGCCATTCATTCCAGAACGTATGGCATCGAGAATTCTTGGAATGGGCGAT
GTTCTCACGTTTGTCGAGAAGGCCCAGGAAGAAATGGATGAAAAAGAAGC
TGAAAAGATGACAAGGCGCATGATGGAGGCTAAGTTTGATTTCAATGACT
TTCTTAAACAAACAAAGATGATCTCGACCATGGGCTCACTCGCTGGGGTG
ATGAAGATGTTACCAGGTGTTGGTTCAATATCATCGTCAAAGATGGCCCA
AGCAGAAGCAAAGCTGAAGCTTGCCGACAGTCTGATCAAATCTATGACTA
TCCAAGAGCGTACGAACCCAGAACTTCTTCACTCCGGTGCCTCCGCTCGC
AGCAGATTAGCGCGAATTTCAAAAGGTGCGGGGAGGTCAAAGAATGAGGC
AGAAGACTTGGTCAGTGAGTTTAGGAAAATGAGGGATATGATGTCACGAA
TGAGCAGAAAAATGATGGACAGTCCAGCTGGTCCGGACGGCGCACAAGGT
CAGTCGGTGGGAAACAGATCACAGCGACGAAAGTCCGGTAAAAAGAAGGC
TCAGAAGAAAACGGCCAAACGCGGCTTCGGCTAA

Coding sequence (CDS) from alignment at tig00000176_pilon:70465..71898+

>Ggra9063.t1 ID=Ggra9063.t1|Name=Ggra9063.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000176_pilon:70465..71898+ (Gracilaria gracilis GNS1m male)
ATGCTCTTCGATTCTTTAACCGAGAAGATGGAAGAAACTGTCAGGAGAAT
GCGGGGAGTCGACAAAATCACGGACAAGAATGTTGCCGGTGCGATGAAAC
AGGTGAAACGCGCGTTGCTTGATGCGGACGTCAACTTGCGTGTTGTAAAT
TCATTAACCAAGCAGATAAAACGAAGAGCGATTGGAGAAGAAGTAACCCC
GGGCGTGAAACCCGGACAAATGCTGATCAAGATTATGCATGAGGAACTGA
CTGCGATAATGGGAAAGGACCAGGCCCCACTTGCGAGAAGGATGGATGGA
AAGCCGACAGTTATTTTGTTGGCAGGTCTACAGGGAGCCGGAAAGACTAC
CGCAGCCGCTAAACTTGCGTTGTATTGCTTGAAGGAAAAACGCTCAGTCA
TGCTAATTGCAGGTGATGTGTACAGGCCTGCTGCCATTGACCAGCTGAAG
ACTTTAGGAACTTCAATTGAGGTGGACGTTTTTAGCTTAGGCACAGAAGC
AGATCCACGAGACATTGTCCGAAAAGGGATTGAGAAAGGTGTGAACGATA
GCATTGACACGCTAATCATCGATACCGCTGGTCGTCAAGTAATTGACTCT
AAACTCATGAAGGAATTGAAGGATATCAAGACAATCAGCAGCGCAGATGA
AACTCTGCTCGTCGTAGATGCAATGACTGGGCAAGAAGCTGCGACGTTGA
CTAAGACTTTCAACGAAGAGGTAGGTATCACGGGGGCAATACTCACTAAA
CTAGACGGTGACACCCGAGGTGGTGCAGCCTTATCTGTACAACAAGTCGC
CGGGGCCCCTATTAAGTTCACTGGTGTAGGTGAGCGGGTTGAAAAGCTAC
AGCCATTCATTCCAGAACGTATGGCATCGAGAATTCTTGGAATGGGCGAT
GTTCTCACGTTTGTCGAGAAGGCCCAGGAAGAAATGGATGAAAAAGAAGC
TGAAAAGATGACAAGGCGCATGATGGAGGCTAAGTTTGATTTCAATGACT
TTCTTAAACAAACAAAGATGATCTCGACCATGGGCTCACTCGCTGGGGTG
ATGAAGATGTTACCAGGTGTTGGTTCAATATCATCGTCAAAGATGGCCCA
AGCAGAAGCAAAGCTGAAGCTTGCCGACAGTCTGATCAAATCTATGACTA
TCCAAGAGCGTACGAACCCAGAACTTCTTCACTCCGGTGCCTCCGCTCGC
AGCAGATTAGCGCGAATTTCAAAAGGTGCGGGGAGGTCAAAGAATGAGGC
AGAAGACTTGGTCAGTGAGTTTAGGAAAATGAGGGATATGATGTCACGAA
TGAGCAGAAAAATGATGGACAGTCCAGCTGGTCCGGACGGCGCACAAGGT
CAGTCGGTGGGAAACAGATCACAGCGACGAAAGTCCGGTAAAAAGAAGGC
TCAGAAGAAAACGGCCAAACGCGGCTTCGGCTAA