Ggra906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra906.t1
Unique NameGgra906.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length384
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:289669..290820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra906Ggra906Gracilaria gracilis GNS1m malegenetig00000049_pilon 289669..290820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra906.t1.stop1Ggra906.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 289669..289671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra906.t1.CDS1Ggra906.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 289669..290820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra906.t1.exon1Ggra906.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 289669..290820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra906.t1.start1Ggra906.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 290818..290820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra906.t1Ggra906.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 289669..290820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra906.t1 ID=Ggra906.t1|Name=Ggra906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=384bp
MSGWEAGPVLSEESTICLEEIPSPFTIVCIPNDNQSPVWAKFYVNGNFFR
TERRLPYVITGDTFRAGASAWMPDSDVADVKCRLSTGDVVMSRITFTCFG
NEETTVPPPTGSTTTTTVPPTTTTLPPTTTATTLPPTTTTLPPTTTTLPP
TTTTLPPTTPTLPPTTTTLAPTTTTLAPTTTTLPPTATTLPPTTTTLPPT
TTSPVPPEDYCIYIPAKSYESKTGDWEEGVEAMEYKFDDDRTRTDRPGRA
TLRYSFTPSYTTRYALTLDMSSSDKLDHNDVWLELVSVPFTLVSKSGTTM
DGESGFNKAYHNKNGRGKIVFTADFTPHTFSTAVPLQAGATYQVKVGGRS
TKVALFGVIMFPCETYGCVLGREWYRSANTCSA*
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spliced messenger RNA

>Ggra906.t1 ID=Ggra906.t1|Name=Ggra906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000049_pilon:289669..290820- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGATGGGAAGCCGGCCCCGTGCTCTCTGAAGAATCTACCATCTG
TCTGGAAGAAATCCCTTCGCCGTTCACAATCGTGTGCATCCCCAACGACA
ACCAGTCACCGGTTTGGGCAAAGTTCTACGTAAATGGAAATTTCTTCCGC
ACCGAACGAAGGTTGCCGTATGTCATTACCGGCGATACGTTTAGAGCCGG
TGCCAGCGCCTGGATGCCTGACTCGGATGTCGCTGACGTGAAATGCAGAC
TCAGTACTGGAGATGTTGTCATGTCGAGGATTACGTTCACTTGTTTTGGT
AATGAGGAGACTACTGTGCCGCCACCGACTGGTTCAACCACGACGACCAC
TGTACCGCCAACCACAACCACTCTGCCACCCACCACCACCGCCACTACTC
TTCCTCCGACGACCACTACTCTTCCTCCGACGACCACTACTCTTCCTCCG
ACGACCACCACACTTCCTCCGACGACCCCTACTCTGCCTCCGACGACCAC
CACTCTGGCTCCGACGACCACCACTCTGGCTCCGACGACCACTACTCTGC
CTCCGACGGCCACTACTCTGCCTCCGACGACCACTACTCTGCCTCCGACG
ACCACCTCTCCCGTGCCGCCAGAAGACTACTGCATTTACATTCCCGCCAA
GTCATATGAATCGAAGACAGGAGATTGGGAAGAAGGAGTTGAGGCTATGG
AGTACAAGTTTGATGATGACCGCACGAGGACGGATAGACCTGGACGCGCA
ACGTTGCGATATTCATTCACCCCGAGTTACACTACCCGATACGCCCTGAC
GCTTGACATGTCCTCCAGTGACAAGCTCGACCACAACGACGTGTGGTTGG
AACTTGTTTCTGTACCCTTCACGCTTGTTAGCAAATCTGGGACTACCATG
GATGGAGAGAGCGGCTTCAATAAGGCTTATCATAACAAGAATGGTCGTGG
TAAGATTGTATTTACAGCTGATTTCACCCCGCATACTTTCTCCACCGCAG
TTCCGCTACAAGCAGGAGCGACGTACCAGGTTAAAGTTGGGGGTAGGAGT
ACGAAGGTCGCCTTGTTTGGAGTGATTATGTTCCCCTGTGAAACCTATGG
ATGTGTACTCGGTCGAGAATGGTATAGATCAGCTAACACTTGTTCGGCGT
AG
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protein sequence of Ggra906.t1

>Ggra906.t1 ID=Ggra906.t1|Name=Ggra906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=384bp
MSGWEAGPVLSEESTICLEEIPSPFTIVCIPNDNQSPVWAKFYVNGNFFR
TERRLPYVITGDTFRAGASAWMPDSDVADVKCRLSTGDVVMSRITFTCFG
NEETTVPPPTGSTTTTTVPPTTTTLPPTTTATTLPPTTTTLPPTTTTLPP
TTTTLPPTTPTLPPTTTTLAPTTTTLAPTTTTLPPTATTLPPTTTTLPPT
TTSPVPPEDYCIYIPAKSYESKTGDWEEGVEAMEYKFDDDRTRTDRPGRA
TLRYSFTPSYTTRYALTLDMSSSDKLDHNDVWLELVSVPFTLVSKSGTTM
DGESGFNKAYHNKNGRGKIVFTADFTPHTFSTAVPLQAGATYQVKVGGRS
TKVALFGVIMFPCETYGCVLGREWYRSANTCSA*
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mRNA from alignment at tig00000049_pilon:289669..290820-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra906.t1 ID=Ggra906.t1|Name=Ggra906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1152bp|location=Sequence derived from alignment at tig00000049_pilon:289669..290820- (Gracilaria gracilis GNS1m male)
ATGTCAGGATGGGAAGCCGGCCCCGTGCTCTCTGAAGAATCTACCATCTG
TCTGGAAGAAATCCCTTCGCCGTTCACAATCGTGTGCATCCCCAACGACA
ACCAGTCACCGGTTTGGGCAAAGTTCTACGTAAATGGAAATTTCTTCCGC
ACCGAACGAAGGTTGCCGTATGTCATTACCGGCGATACGTTTAGAGCCGG
TGCCAGCGCCTGGATGCCTGACTCGGATGTCGCTGACGTGAAATGCAGAC
TCAGTACTGGAGATGTTGTCATGTCGAGGATTACGTTCACTTGTTTTGGT
AATGAGGAGACTACTGTGCCGCCACCGACTGGTTCAACCACGACGACCAC
TGTACCGCCAACCACAACCACTCTGCCACCCACCACCACCGCCACTACTC
TTCCTCCGACGACCACTACTCTTCCTCCGACGACCACTACTCTTCCTCCG
ACGACCACCACACTTCCTCCGACGACCCCTACTCTGCCTCCGACGACCAC
CACTCTGGCTCCGACGACCACCACTCTGGCTCCGACGACCACTACTCTGC
CTCCGACGGCCACTACTCTGCCTCCGACGACCACTACTCTGCCTCCGACG
ACCACCTCTCCCGTGCCGCCAGAAGACTACTGCATTTACATTCCCGCCAA
GTCATATGAATCGAAGACAGGAGATTGGGAAGAAGGAGTTGAGGCTATGG
AGTACAAGTTTGATGATGACCGCACGAGGACGGATAGACCTGGACGCGCA
ACGTTGCGATATTCATTCACCCCGAGTTACACTACCCGATACGCCCTGAC
GCTTGACATGTCCTCCAGTGACAAGCTCGACCACAACGACGTGTGGTTGG
AACTTGTTTCTGTACCCTTCACGCTTGTTAGCAAATCTGGGACTACCATG
GATGGAGAGAGCGGCTTCAATAAGGCTTATCATAACAAGAATGGTCGTGG
TAAGATTGTATTTACAGCTGATTTCACCCCGCATACTTTCTCCACCGCAG
TTCCGCTACAAGCAGGAGCGACGTACCAGGTTAAAGTTGGGGGTAGGAGT
ACGAAGGTCGCCTTGTTTGGAGTGATTATGTTCCCCTGTGAAACCTATGG
ATGTGTACTCGGTCGAGAATGGTATAGATCAGCTAACACTTGTTCGGCGT
AG
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Coding sequence (CDS) from alignment at tig00000049_pilon:289669..290820-

>Ggra906.t1 ID=Ggra906.t1|Name=Ggra906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1152bp|location=Sequence derived from alignment at tig00000049_pilon:289669..290820- (Gracilaria gracilis GNS1m male)
ATGTCAGGATGGGAAGCCGGCCCCGTGCTCTCTGAAGAATCTACCATCTG
TCTGGAAGAAATCCCTTCGCCGTTCACAATCGTGTGCATCCCCAACGACA
ACCAGTCACCGGTTTGGGCAAAGTTCTACGTAAATGGAAATTTCTTCCGC
ACCGAACGAAGGTTGCCGTATGTCATTACCGGCGATACGTTTAGAGCCGG
TGCCAGCGCCTGGATGCCTGACTCGGATGTCGCTGACGTGAAATGCAGAC
TCAGTACTGGAGATGTTGTCATGTCGAGGATTACGTTCACTTGTTTTGGT
AATGAGGAGACTACTGTGCCGCCACCGACTGGTTCAACCACGACGACCAC
TGTACCGCCAACCACAACCACTCTGCCACCCACCACCACCGCCACTACTC
TTCCTCCGACGACCACTACTCTTCCTCCGACGACCACTACTCTTCCTCCG
ACGACCACCACACTTCCTCCGACGACCCCTACTCTGCCTCCGACGACCAC
CACTCTGGCTCCGACGACCACCACTCTGGCTCCGACGACCACTACTCTGC
CTCCGACGGCCACTACTCTGCCTCCGACGACCACTACTCTGCCTCCGACG
ACCACCTCTCCCGTGCCGCCAGAAGACTACTGCATTTACATTCCCGCCAA
GTCATATGAATCGAAGACAGGAGATTGGGAAGAAGGAGTTGAGGCTATGG
AGTACAAGTTTGATGATGACCGCACGAGGACGGATAGACCTGGACGCGCA
ACGTTGCGATATTCATTCACCCCGAGTTACACTACCCGATACGCCCTGAC
GCTTGACATGTCCTCCAGTGACAAGCTCGACCACAACGACGTGTGGTTGG
AACTTGTTTCTGTACCCTTCACGCTTGTTAGCAAATCTGGGACTACCATG
GATGGAGAGAGCGGCTTCAATAAGGCTTATCATAACAAGAATGGTCGTGG
TAAGATTGTATTTACAGCTGATTTCACCCCGCATACTTTCTCCACCGCAG
TTCCGCTACAAGCAGGAGCGACGTACCAGGTTAAAGTTGGGGGTAGGAGT
ACGAAGGTCGCCTTGTTTGGAGTGATTATGTTCCCCTGTGAAACCTATGG
ATGTGTACTCGGTCGAGAATGGTATAGATCAGCTAACACTTGTTCGGCGT
AG
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