Ggra9056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9056.t1
Unique Name	Ggra9056.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:53567..55057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004994526.1
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K05658
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Evalue	2.05e-70
EggNOG OGs	COG1132@1\|root,KOG0055@2759\|Eukaryota,38E88@33154\|Opisthokonta
EC	3.6.3.44
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	Q
BRITE	ko00000,ko00001,ko01000,ko02000,ko04090,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9056	Ggra9056	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 53567..55057 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9056.t1.start1	Ggra9056.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 53567..53569 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9056.t1.CDS1	Ggra9056.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 53567..55057 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9056.t1.exon1	Ggra9056.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 53567..55057 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9056.t1.stop1	Ggra9056.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 55055..55057 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9056.t1	Ggra9056.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 53567..55057 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:53567..55057+
coding sequence from alignment at tig00000176_pilon:53567..55057+

mRNA sequence

>Ggra9056.t1 ID=Ggra9056.t1|Name=Ggra9056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MSSEQPLEKDELAKQSDNQPPHVPYWRLFRYAAPVDKLKVLLAVLIAAIH
GAMFPILIITLGTVIDDFGSTLVPPNDPNFVPLTDITSSYTATSNLVLGV
SIASLVLGTLQLSLAIFAANRIANSLRSLCFRSLLRQDCHFYDHHETGTL
THLIINDVSLIQGGIGDKLPTCVQYTSTFVVGIAIAFAYSWKLTLVILAI
TPLLIGTGLVFGRLNAAVDGEGNTAYAAATAIATEVLRLVKTVTAYSGQE
EEASRYEKSLSHAFRAAIRSALVSGIGLGLAFSILIASYSLSFWYGSRLV
RSGDISPGDVLLVFLSVAIGASSLGTAGPAFKSIPVAQAAAPRVFEIIER
ASEIDPLDYDSGRVPNIPITGSLQFHDVDFTYQSEDVEHRNMVLKQFNLD
IPEGSFGRHLWESRVVESQLLLAFSCEMYDPTNGTITLDGVDLREYKRVL
VEGADGHSCSDSVRCSGSPSRKTLHSLQGVEFSTDPKSGKRTVVPT*

spliced messenger RNA

>Ggra9056.t1 ID=Ggra9056.t1|Name=Ggra9056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000176_pilon:53567..55057+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAGAACAACCGCTCGAGAAGGATGAGCTGGCGAAGCAAAGTGA
CAATCAACCGCCACATGTGCCGTACTGGCGCTTGTTTCGATATGCTGCGC
CTGTCGATAAGCTCAAGGTGTTGCTGGCTGTTCTCATAGCCGCCATTCAT
GGAGCCATGTTTCCTATTCTCATCATTACGCTCGGAACTGTTATCGACGA
CTTTGGATCCACTTTGGTTCCTCCGAACGACCCCAACTTCGTACCACTCA
CTGATATTACCTCCTCGTATACCGCCACCTCCAATCTGGTGCTGGGTGTT
TCCATTGCCAGTCTGGTGCTGGGTACGCTACAACTTTCGCTGGCTATCTT
TGCCGCAAATCGTATTGCCAACAGCCTGCGCTCGCTGTGCTTTCGCTCGC
TGTTGCGCCAGGATTGTCACTTTTATGATCACCATGAGACAGGTACTCTG
ACTCATCTCATTATAAATGACGTTAGCCTCATTCAAGGTGGTATCGGAGA
CAAGCTCCCTACGTGCGTGCAGTATACTTCCACCTTCGTCGTGGGCATCG
CTATTGCGTTTGCCTACAGTTGGAAGCTTACGTTGGTCATCCTTGCAATC
ACCCCGCTGTTGATTGGCACCGGTTTGGTGTTTGGGCGCCTTAACGCCGC
TGTTGACGGGGAGGGCAATACCGCCTATGCTGCCGCTACAGCCATCGCAA
CCGAAGTGCTCCGTCTCGTGAAGACTGTCACTGCGTACTCGGGGCAGGAA
GAAGAAGCCTCTCGCTATGAAAAGTCGTTGTCACATGCTTTCCGTGCCGC
CATTCGATCCGCGTTGGTTTCCGGCATAGGGCTTGGACTCGCGTTCTCTA
TTCTTATTGCTTCGTATTCTCTGTCGTTTTGGTACGGCTCTCGCCTCGTG
CGCTCTGGTGATATATCTCCGGGAGATGTTCTGCTCGTGTTCTTGTCTGT
CGCCATAGGCGCCAGTTCGTTGGGCACGGCCGGTCCGGCGTTCAAGTCGA
TCCCTGTGGCACAGGCTGCTGCCCCGCGAGTGTTTGAGATCATCGAACGT
GCGAGTGAGATTGATCCGCTTGATTATGATTCTGGACGGGTGCCAAACAT
TCCGATTACTGGTTCGTTGCAATTCCATGACGTCGATTTCACGTATCAGT
CGGAGGATGTTGAACACCGTAACATGGTACTCAAGCAATTCAACCTTGAT
ATTCCGGAAGGTAGTTTCGGAAGGCATTTGTGGGAAAGTCGGGTTGTGGA
AAGTCAACTATTGCTCGCCTTCTCATGCGAAATGTATGACCCCACAAATG
GCACGATAACCTTGGATGGTGTCGACCTCCGCGAATACAAACGTGTGCTG
GTTGAGGGCGCAGATGGGCATAGTTGCTCAGACTCCGTCCGCTGTTCAGG
CTCTCCATCAAGGAAAACATTGCACTCGTTGCAGGGAGTGGAGTTTTCTA
CCGACCCGAAGTCTGGGAAGAGGACCGTGGTACCCACGTAA

protein sequence of Ggra9056.t1

>Ggra9056.t1 ID=Ggra9056.t1|Name=Ggra9056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MSSEQPLEKDELAKQSDNQPPHVPYWRLFRYAAPVDKLKVLLAVLIAAIH
GAMFPILIITLGTVIDDFGSTLVPPNDPNFVPLTDITSSYTATSNLVLGV
SIASLVLGTLQLSLAIFAANRIANSLRSLCFRSLLRQDCHFYDHHETGTL
THLIINDVSLIQGGIGDKLPTCVQYTSTFVVGIAIAFAYSWKLTLVILAI
TPLLIGTGLVFGRLNAAVDGEGNTAYAAATAIATEVLRLVKTVTAYSGQE
EEASRYEKSLSHAFRAAIRSALVSGIGLGLAFSILIASYSLSFWYGSRLV
RSGDISPGDVLLVFLSVAIGASSLGTAGPAFKSIPVAQAAAPRVFEIIER
ASEIDPLDYDSGRVPNIPITGSLQFHDVDFTYQSEDVEHRNMVLKQFNLD
IPEGSFGRHLWESRVVESQLLLAFSCEMYDPTNGTITLDGVDLREYKRVL
VEGADGHSCSDSVRCSGSPSRKTLHSLQGVEFSTDPKSGKRTVVPT*

mRNA from alignment at tig00000176_pilon:53567..55057+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9056.t1 ID=Ggra9056.t1|Name=Ggra9056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000176_pilon:53567..55057+ (Gracilaria gracilis GNS1m male)
ATGTCTTCAGAACAACCGCTCGAGAAGGATGAGCTGGCGAAGCAAAGTGA
CAATCAACCGCCACATGTGCCGTACTGGCGCTTGTTTCGATATGCTGCGC
CTGTCGATAAGCTCAAGGTGTTGCTGGCTGTTCTCATAGCCGCCATTCAT
GGAGCCATGTTTCCTATTCTCATCATTACGCTCGGAACTGTTATCGACGA
CTTTGGATCCACTTTGGTTCCTCCGAACGACCCCAACTTCGTACCACTCA
CTGATATTACCTCCTCGTATACCGCCACCTCCAATCTGGTGCTGGGTGTT
TCCATTGCCAGTCTGGTGCTGGGTACGCTACAACTTTCGCTGGCTATCTT
TGCCGCAAATCGTATTGCCAACAGCCTGCGCTCGCTGTGCTTTCGCTCGC
TGTTGCGCCAGGATTGTCACTTTTATGATCACCATGAGACAGGTACTCTG
ACTCATCTCATTATAAATGACGTTAGCCTCATTCAAGGTGGTATCGGAGA
CAAGCTCCCTACGTGCGTGCAGTATACTTCCACCTTCGTCGTGGGCATCG
CTATTGCGTTTGCCTACAGTTGGAAGCTTACGTTGGTCATCCTTGCAATC
ACCCCGCTGTTGATTGGCACCGGTTTGGTGTTTGGGCGCCTTAACGCCGC
TGTTGACGGGGAGGGCAATACCGCCTATGCTGCCGCTACAGCCATCGCAA
CCGAAGTGCTCCGTCTCGTGAAGACTGTCACTGCGTACTCGGGGCAGGAA
GAAGAAGCCTCTCGCTATGAAAAGTCGTTGTCACATGCTTTCCGTGCCGC
CATTCGATCCGCGTTGGTTTCCGGCATAGGGCTTGGACTCGCGTTCTCTA
TTCTTATTGCTTCGTATTCTCTGTCGTTTTGGTACGGCTCTCGCCTCGTG
CGCTCTGGTGATATATCTCCGGGAGATGTTCTGCTCGTGTTCTTGTCTGT
CGCCATAGGCGCCAGTTCGTTGGGCACGGCCGGTCCGGCGTTCAAGTCGA
TCCCTGTGGCACAGGCTGCTGCCCCGCGAGTGTTTGAGATCATCGAACGT
GCGAGTGAGATTGATCCGCTTGATTATGATTCTGGACGGGTGCCAAACAT
TCCGATTACTGGTTCGTTGCAATTCCATGACGTCGATTTCACGTATCAGT
CGGAGGATGTTGAACACCGTAACATGGTACTCAAGCAATTCAACCTTGAT
ATTCCGGAAGGTAGTTTCGGAAGGCATTTGTGGGAAAGTCGGGTTGTGGA
AAGTCAACTATTGCTCGCCTTCTCATGCGAAATGTATGACCCCACAAATG
GCACGATAACCTTGGATGGTGTCGACCTCCGCGAATACAAACGTGTGCTG
GTTGAGGGCGCAGATGGGCATAGTTGCTCAGACTCCGTCCGCTGTTCAGG
CTCTCCATCAAGGAAAACATTGCACTCGTTGCAGGGAGTGGAGTTTTCTA
CCGACCCGAAGTCTGGGAAGAGGACCGTGGTACCCACGTAA

Coding sequence (CDS) from alignment at tig00000176_pilon:53567..55057+

>Ggra9056.t1 ID=Ggra9056.t1|Name=Ggra9056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000176_pilon:53567..55057+ (Gracilaria gracilis GNS1m male)
ATGTCTTCAGAACAACCGCTCGAGAAGGATGAGCTGGCGAAGCAAAGTGA
CAATCAACCGCCACATGTGCCGTACTGGCGCTTGTTTCGATATGCTGCGC
CTGTCGATAAGCTCAAGGTGTTGCTGGCTGTTCTCATAGCCGCCATTCAT
GGAGCCATGTTTCCTATTCTCATCATTACGCTCGGAACTGTTATCGACGA
CTTTGGATCCACTTTGGTTCCTCCGAACGACCCCAACTTCGTACCACTCA
CTGATATTACCTCCTCGTATACCGCCACCTCCAATCTGGTGCTGGGTGTT
TCCATTGCCAGTCTGGTGCTGGGTACGCTACAACTTTCGCTGGCTATCTT
TGCCGCAAATCGTATTGCCAACAGCCTGCGCTCGCTGTGCTTTCGCTCGC
TGTTGCGCCAGGATTGTCACTTTTATGATCACCATGAGACAGGTACTCTG
ACTCATCTCATTATAAATGACGTTAGCCTCATTCAAGGTGGTATCGGAGA
CAAGCTCCCTACGTGCGTGCAGTATACTTCCACCTTCGTCGTGGGCATCG
CTATTGCGTTTGCCTACAGTTGGAAGCTTACGTTGGTCATCCTTGCAATC
ACCCCGCTGTTGATTGGCACCGGTTTGGTGTTTGGGCGCCTTAACGCCGC
TGTTGACGGGGAGGGCAATACCGCCTATGCTGCCGCTACAGCCATCGCAA
CCGAAGTGCTCCGTCTCGTGAAGACTGTCACTGCGTACTCGGGGCAGGAA
GAAGAAGCCTCTCGCTATGAAAAGTCGTTGTCACATGCTTTCCGTGCCGC
CATTCGATCCGCGTTGGTTTCCGGCATAGGGCTTGGACTCGCGTTCTCTA
TTCTTATTGCTTCGTATTCTCTGTCGTTTTGGTACGGCTCTCGCCTCGTG
CGCTCTGGTGATATATCTCCGGGAGATGTTCTGCTCGTGTTCTTGTCTGT
CGCCATAGGCGCCAGTTCGTTGGGCACGGCCGGTCCGGCGTTCAAGTCGA
TCCCTGTGGCACAGGCTGCTGCCCCGCGAGTGTTTGAGATCATCGAACGT
GCGAGTGAGATTGATCCGCTTGATTATGATTCTGGACGGGTGCCAAACAT
TCCGATTACTGGTTCGTTGCAATTCCATGACGTCGATTTCACGTATCAGT
CGGAGGATGTTGAACACCGTAACATGGTACTCAAGCAATTCAACCTTGAT
ATTCCGGAAGGTAGTTTCGGAAGGCATTTGTGGGAAAGTCGGGTTGTGGA
AAGTCAACTATTGCTCGCCTTCTCATGCGAAATGTATGACCCCACAAATG
GCACGATAACCTTGGATGGTGTCGACCTCCGCGAATACAAACGTGTGCTG
GTTGAGGGCGCAGATGGGCATAGTTGCTCAGACTCCGTCCGCTGTTCAGG
CTCTCCATCAAGGAAAACATTGCACTCGTTGCAGGGAGTGGAGTTTTCTA
CCGACCCGAAGTCTGGGAAGAGGACCGTGGTACCCACGTAA