Ggra9054.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9054.t1
Unique NameGgra9054.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:49781..50413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ13766
Max annot lvl35493|Streptophyta
Evalue9.43e-16
EggNOG OGs2CM7D@1|root,2QPII@2759|Eukaryota,37JGP@33090|Viridiplantae,3GA37@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9054Ggra9054Gracilaria gracilis GNS1m malegenetig00000176_pilon 49781..50413 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9054.t1.stop1Ggra9054.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 49781..49783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9054.t1.CDS1Ggra9054.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 49781..50413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9054.t1.exon1Ggra9054.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 49781..50413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9054.t1.start1Ggra9054.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 50411..50413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9054.t1Ggra9054.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 49781..50413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9054.t1 ID=Ggra9054.t1|Name=Ggra9054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MDADDAPAFTPSWPAGVSLSPSISWHSGARSPAVARRSLPAALESRNVRC
ALRNTPASHPNDELAWKDRVALYAQLSAEETLSMLLSALRCNARSGPSKD
DGIDALYAFANLDIWALSHHFFGRRIDLGQFERFKRVIVANPYDVFFADY
ESETLSALHAGDDCYISRRLFRVAGVESVFTFSMSRQEFGGGGGRRRWMV
DSIIHDEPSV*
back to top

spliced messenger RNA

>Ggra9054.t1 ID=Ggra9054.t1|Name=Ggra9054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000176_pilon:49781..50413- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAGACGACGCGCCGGCGTTTACGCCATCGTGGCCTGCTGGCGT
CTCGCTGTCGCCGTCCATCTCATGGCATAGCGGCGCGCGCTCGCCCGCCG
TGGCACGTCGCTCGCTTCCAGCAGCCTTGGAGTCGCGCAACGTTCGCTGC
GCCTTGAGGAACACGCCGGCCTCGCATCCCAACGACGAGTTGGCGTGGAA
GGACCGCGTGGCGTTGTACGCACAGCTGTCAGCCGAGGAGACGCTGTCCA
TGCTTTTGAGCGCGCTGCGCTGCAACGCGCGCAGCGGACCGAGCAAGGAT
GACGGCATCGACGCGCTTTATGCGTTCGCAAACCTCGACATCTGGGCGTT
GTCGCACCACTTTTTCGGGCGTCGAATAGACCTCGGCCAGTTTGAACGCT
TCAAGAGGGTGATAGTTGCCAACCCGTACGACGTATTTTTCGCCGACTAC
GAGAGTGAGACGCTGTCTGCGTTGCATGCGGGCGATGATTGTTACATCAG
TCGCCGCTTGTTTCGCGTCGCGGGCGTGGAGAGTGTGTTCACTTTCTCCA
TGTCCAGACAGGAGTTTGGCGGCGGCGGCGGCAGGAGACGTTGGATGGTA
GACTCTATCATTCACGACGAGCCGTCTGTATAA
back to top

protein sequence of Ggra9054.t1

>Ggra9054.t1 ID=Ggra9054.t1|Name=Ggra9054.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MDADDAPAFTPSWPAGVSLSPSISWHSGARSPAVARRSLPAALESRNVRC
ALRNTPASHPNDELAWKDRVALYAQLSAEETLSMLLSALRCNARSGPSKD
DGIDALYAFANLDIWALSHHFFGRRIDLGQFERFKRVIVANPYDVFFADY
ESETLSALHAGDDCYISRRLFRVAGVESVFTFSMSRQEFGGGGGRRRWMV
DSIIHDEPSV*
back to top

mRNA from alignment at tig00000176_pilon:49781..50413-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9054.t1 ID=Ggra9054.t1|Name=Ggra9054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000176_pilon:49781..50413- (Gracilaria gracilis GNS1m male)
ATGGACGCAGACGACGCGCCGGCGTTTACGCCATCGTGGCCTGCTGGCGT
CTCGCTGTCGCCGTCCATCTCATGGCATAGCGGCGCGCGCTCGCCCGCCG
TGGCACGTCGCTCGCTTCCAGCAGCCTTGGAGTCGCGCAACGTTCGCTGC
GCCTTGAGGAACACGCCGGCCTCGCATCCCAACGACGAGTTGGCGTGGAA
GGACCGCGTGGCGTTGTACGCACAGCTGTCAGCCGAGGAGACGCTGTCCA
TGCTTTTGAGCGCGCTGCGCTGCAACGCGCGCAGCGGACCGAGCAAGGAT
GACGGCATCGACGCGCTTTATGCGTTCGCAAACCTCGACATCTGGGCGTT
GTCGCACCACTTTTTCGGGCGTCGAATAGACCTCGGCCAGTTTGAACGCT
TCAAGAGGGTGATAGTTGCCAACCCGTACGACGTATTTTTCGCCGACTAC
GAGAGTGAGACGCTGTCTGCGTTGCATGCGGGCGATGATTGTTACATCAG
TCGCCGCTTGTTTCGCGTCGCGGGCGTGGAGAGTGTGTTCACTTTCTCCA
TGTCCAGACAGGAGTTTGGCGGCGGCGGCGGCAGGAGACGTTGGATGGTA
GACTCTATCATTCACGACGAGCCGTCTGTATAA
back to top

Coding sequence (CDS) from alignment at tig00000176_pilon:49781..50413-

>Ggra9054.t1 ID=Ggra9054.t1|Name=Ggra9054.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000176_pilon:49781..50413- (Gracilaria gracilis GNS1m male)
ATGGACGCAGACGACGCGCCGGCGTTTACGCCATCGTGGCCTGCTGGCGT
CTCGCTGTCGCCGTCCATCTCATGGCATAGCGGCGCGCGCTCGCCCGCCG
TGGCACGTCGCTCGCTTCCAGCAGCCTTGGAGTCGCGCAACGTTCGCTGC
GCCTTGAGGAACACGCCGGCCTCGCATCCCAACGACGAGTTGGCGTGGAA
GGACCGCGTGGCGTTGTACGCACAGCTGTCAGCCGAGGAGACGCTGTCCA
TGCTTTTGAGCGCGCTGCGCTGCAACGCGCGCAGCGGACCGAGCAAGGAT
GACGGCATCGACGCGCTTTATGCGTTCGCAAACCTCGACATCTGGGCGTT
GTCGCACCACTTTTTCGGGCGTCGAATAGACCTCGGCCAGTTTGAACGCT
TCAAGAGGGTGATAGTTGCCAACCCGTACGACGTATTTTTCGCCGACTAC
GAGAGTGAGACGCTGTCTGCGTTGCATGCGGGCGATGATTGTTACATCAG
TCGCCGCTTGTTTCGCGTCGCGGGCGTGGAGAGTGTGTTCACTTTCTCCA
TGTCCAGACAGGAGTTTGGCGGCGGCGGCGGCAGGAGACGTTGGATGGTA
GACTCTATCATTCACGACGAGCCGTCTGTATAA
back to top