Ggra9052.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9052.t1
Unique NameGgra9052.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:48089..48761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002586263.1
Preferred nameRPL24
PFAMsRibosomal_L24e
Max annot lvl33208|Metazoa
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000027,GO:0000075,GO:0000184,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0000956,GO:0001654,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006928,GO:0006935,GO:0006996,GO:0007049,GO:0007093,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010458,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0021545,GO:0021554,GO:0021675,GO:0022008,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031290,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042330,GO:0042788,GO:0042886,GO:0043009,GO:0043010,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045047,GO:0045184,GO:0045786,GO:0045930,GO:0046483,GO:0046700,GO:0046907,GO:0048285,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0060041,GO:0060255,GO:0061564,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:0140014,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902626,GO:1903047,GO:1990904
Evalue4.66e-39
EggNOG OGsCOG2075@1|root,KOG1722@2759|Eukaryota,3A053@33154|Opisthokonta,3BEV7@33208|Metazoa,3D1AP@33213|Bilateria,486P8@7711|Chordata
Descriptionassembly of large subunit precursor of preribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9052Ggra9052Gracilaria gracilis GNS1m malegenetig00000176_pilon 48089..48761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1Ggra9052.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 48089..48761 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1.start1Ggra9052.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 48089..48091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1.CDS1Ggra9052.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 48089..48099 +
Ggra9052.t1.CDS2Ggra9052.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 48338..48761 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1.exon1Ggra9052.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 48089..48099 +
Ggra9052.t1.exon2Ggra9052.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 48338..48761 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1.intron1Ggra9052.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 48100..48337 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9052.t1.stop1Ggra9052.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 48759..48761 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRAAAPSAKGVNKMPVAQRR*
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spliced messenger RNA

>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00000176_pilon:48089..48761+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCAAGACCGAGCTTTGTAACTACTCTGGTTTCCGTATCTACCC
TGGACACGGTCGCCGCTACATCCGCGTCGACGGACGCCAATATGTGTTCG
TCAACGCCAAGTCCGAGGCGTCGTTCCACATGAAGCGCAAGCCCGCCAAG
CACTCGTGGACCCAATTGTACCGCCGTCTCAACAAGAAGGGCGTACAAGA
GGAGACGCAGCGTCGCCGCACGCGCAGAAAGATCTCCTCCGCGCCGAAGG
CTGTCGAGGGTGCCTCTCTTGAGGTCATCAAGGCCAAGCGTAACCAGCGC
CCCGAAGTGCGAAAGGCTGCACGGGAGGCCGCCCTCAAGGACATCAAGGA
GAGGAAGAAGGGTATGCGATCGAAGCGCGCTGCTGCTCCTTCTGCGAAGG
GCGTCAACAAAATGCCTGTCGCTCAACGTCGTTAA
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protein sequence of Ggra9052.t1

>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=145bp
MVVKTELCNYSGFRIYPGHGRRYIRVDGRQYVFVNAKSEASFHMKRKPAK
HSWTQLYRRLNKKGVQEETQRRRTRRKISSAPKAVEGASLEVIKAKRNQR
PEVRKAAREAALKDIKERKKGMRSKRAAAPSAKGVNKMPVAQRR*
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mRNA from alignment at tig00000176_pilon:48089..48761+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=673bp|location=Sequence derived from alignment at tig00000176_pilon:48089..48761+ (Gracilaria gracilis GNS1m male)
ATGGTCGTCAAGTAAGTTGTCATCAGCTCCACACGGATTGCTAATCACAG
CTCTACCACTACACTGCGCCATGTCGCTACGCGTGTACATTGGCTTCGTC
TTTAACGCGATCCAGCGAACTGGTTTGCAAAACAAACGCCTGCGTCACCA
CCCACAGCGGGGCGCGTTGCACTTTCGCACACAATGAGCGACACAATCTG
AGCTTTACTCTAACCGCGTTCCGCTGTCCTCATCACGCGCGCCCCACAGG
ACCGAGCTTTGTAACTACTCTGGTTTCCGTATCTACCCTGGACACGGTCG
CCGCTACATCCGCGTCGACGGACGCCAATATGTGTTCGTCAACGCCAAGT
CCGAGGCGTCGTTCCACATGAAGCGCAAGCCCGCCAAGCACTCGTGGACC
CAATTGTACCGCCGTCTCAACAAGAAGGGCGTACAAGAGGAGACGCAGCG
TCGCCGCACGCGCAGAAAGATCTCCTCCGCGCCGAAGGCTGTCGAGGGTG
CCTCTCTTGAGGTCATCAAGGCCAAGCGTAACCAGCGCCCCGAAGTGCGA
AAGGCTGCACGGGAGGCCGCCCTCAAGGACATCAAGGAGAGGAAGAAGGG
TATGCGATCGAAGCGCGCTGCTGCTCCTTCTGCGAAGGGCGTCAACAAAA
TGCCTGTCGCTCAACGTCGTTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:48089..48761+

>Ggra9052.t1 ID=Ggra9052.t1|Name=Ggra9052.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=435bp|location=Sequence derived from alignment at tig00000176_pilon:48089..48761+ (Gracilaria gracilis GNS1m male)
ATGGTCGTCAAGACCGAGCTTTGTAACTACTCTGGTTTCCGTATCTACCC
TGGACACGGTCGCCGCTACATCCGCGTCGACGGACGCCAATATGTGTTCG
TCAACGCCAAGTCCGAGGCGTCGTTCCACATGAAGCGCAAGCCCGCCAAG
CACTCGTGGACCCAATTGTACCGCCGTCTCAACAAGAAGGGCGTACAAGA
GGAGACGCAGCGTCGCCGCACGCGCAGAAAGATCTCCTCCGCGCCGAAGG
CTGTCGAGGGTGCCTCTCTTGAGGTCATCAAGGCCAAGCGTAACCAGCGC
CCCGAAGTGCGAAAGGCTGCACGGGAGGCCGCCCTCAAGGACATCAAGGA
GAGGAAGAAGGGTATGCGATCGAAGCGCGCTGCTGCTCCTTCTGCGAAGG
GCGTCAACAAAATGCCTGTCGCTCAACGTCGTTAA
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