Ggra9048.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9048.t1
Unique Name	Ggra9048.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	323

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:38723..39691 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707798.1
PFAMs	Peptidase_M24
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01265
Evalue	1.03e-139
EggNOG OGs	COG0024@1\|root,KOG2738@2759\|Eukaryota
EC	3.4.11.18
Description	metalloexopeptidase activity
COG category	E
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9048	Ggra9048	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 38723..39691 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9048.t1.start1	Ggra9048.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 38723..38725 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9048.t1.CDS1	Ggra9048.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 38723..39691 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9048.t1.exon1	Ggra9048.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 38723..39691 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9048.t1.stop1	Ggra9048.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 39689..39691 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9048.t1	Ggra9048.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 38723..39691 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:38723..39691+
coding sequence from alignment at tig00000176_pilon:38723..39691+

mRNA sequence

>Ggra9048.t1 ID=Ggra9048.t1|Name=Ggra9048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=323bp
MKQQKSGKRTPRGFGIEQIPRFKFTGKLRPGMVLQRRSVPQEIRRPDYWK
DGRPKSKLPRFATDILSLTDEEIEKMRVSCRMAREILDIAGQMIQPGVLT
DEIDGVVHEETIKRGAYPSPLNYNNFPKSCCTSINEVVCHGIPDTTALVN
GDIINIDVTVYYNGYHGDCSETFLVGDVDARGRKLVQVTHECLEKAIEIC
KPGLPVKRIGRVIEDHAKRFGFTVVRNFCGHGVNSIFHTTPNVMHFNNNE
AAGILKPGVTFTIEPMINEGTHRNITWPDDWTTTTLDGKRSAQFEHTLLV
TDTGVERLTQKLASSPKYFWEQ*

spliced messenger RNA

>Ggra9048.t1 ID=Ggra9048.t1|Name=Ggra9048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000176_pilon:38723..39691+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGCAGAAATCGGGCAAACGAACACCGAGAGGATTCGGAATTGA
ACAGATACCTCGTTTCAAATTCACTGGCAAGCTACGTCCAGGAATGGTGC
TTCAACGTAGGTCTGTTCCTCAGGAGATACGTCGCCCAGATTATTGGAAG
GATGGACGACCAAAATCAAAACTACCCCGTTTCGCCACGGACATACTGAG
TTTAACAGATGAGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GTGAAATTCTCGATATTGCGGGCCAGATGATCCAGCCTGGTGTGTTAACA
GACGAGATAGATGGAGTCGTACACGAAGAAACAATCAAGCGTGGGGCGTA
TCCATCCCCGCTCAATTACAACAACTTCCCAAAGTCATGTTGCACGTCCA
TCAACGAAGTGGTGTGTCACGGCATTCCGGACACCACCGCGCTAGTGAAC
GGGGATATTATAAACATTGATGTAACTGTGTACTACAATGGCTATCATGG
CGATTGTTCAGAAACGTTTCTTGTTGGCGATGTTGACGCGCGCGGGCGGA
AACTGGTCCAAGTAACCCATGAATGCCTCGAAAAGGCTATTGAGATTTGC
AAGCCGGGCTTACCTGTGAAACGAATCGGTAGAGTGATTGAAGATCACGC
AAAACGTTTCGGTTTCACTGTCGTACGCAACTTCTGCGGGCATGGCGTCA
ACTCCATTTTTCACACAACACCCAATGTCATGCACTTCAATAACAACGAA
GCCGCCGGTATTCTCAAACCTGGTGTTACGTTTACCATTGAGCCTATGAT
TAACGAAGGAACACATCGGAATATCACATGGCCTGATGACTGGACTACTA
CTACGTTAGATGGAAAGCGAAGCGCTCAATTCGAGCATACTCTGCTTGTC
ACCGATACCGGGGTGGAGCGGTTAACCCAGAAATTGGCATCCAGCCCAAA
GTACTTTTGGGAACAATAA

protein sequence of Ggra9048.t1

>Ggra9048.t1 ID=Ggra9048.t1|Name=Ggra9048.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=323bp
MKQQKSGKRTPRGFGIEQIPRFKFTGKLRPGMVLQRRSVPQEIRRPDYWK
DGRPKSKLPRFATDILSLTDEEIEKMRVSCRMAREILDIAGQMIQPGVLT
DEIDGVVHEETIKRGAYPSPLNYNNFPKSCCTSINEVVCHGIPDTTALVN
GDIINIDVTVYYNGYHGDCSETFLVGDVDARGRKLVQVTHECLEKAIEIC
KPGLPVKRIGRVIEDHAKRFGFTVVRNFCGHGVNSIFHTTPNVMHFNNNE
AAGILKPGVTFTIEPMINEGTHRNITWPDDWTTTTLDGKRSAQFEHTLLV
TDTGVERLTQKLASSPKYFWEQ*

mRNA from alignment at tig00000176_pilon:38723..39691+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9048.t1 ID=Ggra9048.t1|Name=Ggra9048.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000176_pilon:38723..39691+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGCAGAAATCGGGCAAACGAACACCGAGAGGATTCGGAATTGA
ACAGATACCTCGTTTCAAATTCACTGGCAAGCTACGTCCAGGAATGGTGC
TTCAACGTAGGTCTGTTCCTCAGGAGATACGTCGCCCAGATTATTGGAAG
GATGGACGACCAAAATCAAAACTACCCCGTTTCGCCACGGACATACTGAG
TTTAACAGATGAGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GTGAAATTCTCGATATTGCGGGCCAGATGATCCAGCCTGGTGTGTTAACA
GACGAGATAGATGGAGTCGTACACGAAGAAACAATCAAGCGTGGGGCGTA
TCCATCCCCGCTCAATTACAACAACTTCCCAAAGTCATGTTGCACGTCCA
TCAACGAAGTGGTGTGTCACGGCATTCCGGACACCACCGCGCTAGTGAAC
GGGGATATTATAAACATTGATGTAACTGTGTACTACAATGGCTATCATGG
CGATTGTTCAGAAACGTTTCTTGTTGGCGATGTTGACGCGCGCGGGCGGA
AACTGGTCCAAGTAACCCATGAATGCCTCGAAAAGGCTATTGAGATTTGC
AAGCCGGGCTTACCTGTGAAACGAATCGGTAGAGTGATTGAAGATCACGC
AAAACGTTTCGGTTTCACTGTCGTACGCAACTTCTGCGGGCATGGCGTCA
ACTCCATTTTTCACACAACACCCAATGTCATGCACTTCAATAACAACGAA
GCCGCCGGTATTCTCAAACCTGGTGTTACGTTTACCATTGAGCCTATGAT
TAACGAAGGAACACATCGGAATATCACATGGCCTGATGACTGGACTACTA
CTACGTTAGATGGAAAGCGAAGCGCTCAATTCGAGCATACTCTGCTTGTC
ACCGATACCGGGGTGGAGCGGTTAACCCAGAAATTGGCATCCAGCCCAAA
GTACTTTTGGGAACAATAA

Coding sequence (CDS) from alignment at tig00000176_pilon:38723..39691+

>Ggra9048.t1 ID=Ggra9048.t1|Name=Ggra9048.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000176_pilon:38723..39691+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGCAGAAATCGGGCAAACGAACACCGAGAGGATTCGGAATTGA
ACAGATACCTCGTTTCAAATTCACTGGCAAGCTACGTCCAGGAATGGTGC
TTCAACGTAGGTCTGTTCCTCAGGAGATACGTCGCCCAGATTATTGGAAG
GATGGACGACCAAAATCAAAACTACCCCGTTTCGCCACGGACATACTGAG
TTTAACAGATGAGGAGATTGAGAAGATGCGCGTTTCTTGCCGTATGGCCC
GTGAAATTCTCGATATTGCGGGCCAGATGATCCAGCCTGGTGTGTTAACA
GACGAGATAGATGGAGTCGTACACGAAGAAACAATCAAGCGTGGGGCGTA
TCCATCCCCGCTCAATTACAACAACTTCCCAAAGTCATGTTGCACGTCCA
TCAACGAAGTGGTGTGTCACGGCATTCCGGACACCACCGCGCTAGTGAAC
GGGGATATTATAAACATTGATGTAACTGTGTACTACAATGGCTATCATGG
CGATTGTTCAGAAACGTTTCTTGTTGGCGATGTTGACGCGCGCGGGCGGA
AACTGGTCCAAGTAACCCATGAATGCCTCGAAAAGGCTATTGAGATTTGC
AAGCCGGGCTTACCTGTGAAACGAATCGGTAGAGTGATTGAAGATCACGC
AAAACGTTTCGGTTTCACTGTCGTACGCAACTTCTGCGGGCATGGCGTCA
ACTCCATTTTTCACACAACACCCAATGTCATGCACTTCAATAACAACGAA
GCCGCCGGTATTCTCAAACCTGGTGTTACGTTTACCATTGAGCCTATGAT
TAACGAAGGAACACATCGGAATATCACATGGCCTGATGACTGGACTACTA
CTACGTTAGATGGAAAGCGAAGCGCTCAATTCGAGCATACTCTGCTTGTC
ACCGATACCGGGGTGGAGCGGTTAACCCAGAAATTGGCATCCAGCCCAAA
GTACTTTTGGGAACAATAA