Ggra9047.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9047.t1
Unique NameGgra9047.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length727
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:35847..38027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707911.1
PFAMsAlpha-amylase
Max annot lvl2759|Eukaryota
Evalue2.27e-164
EggNOG OGsCOG0366@1|root,KOG0471@2759|Eukaryota
Descriptionalpha-amylase activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9047Ggra9047Gracilaria gracilis GNS1m malegenetig00000176_pilon 35847..38027 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9047.t1.stop1Ggra9047.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 35847..35849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9047.t1.CDS1Ggra9047.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 35847..38027 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9047.t1.exon1Ggra9047.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 35847..38027 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9047.t1.start1Ggra9047.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 38025..38027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9047.t1Ggra9047.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 35847..38027 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9047.t1 ID=Ggra9047.t1|Name=Ggra9047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=727bp
MSSASGNTQEEASDSESGRENEQLSNRELTAIIEQQELEIAALREQLHAI
CSANAPASPEDVAPCGSSLHALQRGLTTVDDVRAVGTLCKQLVGVQWERL
QEVFFKQVQVARDALPERVLQWEDSVAEDWYKDAWYLLYVQDMGVEEGKE
EGDFDSLRAMLPYLKRQGFRNLCVLPHYESPMADGGYDVSRYEPRASLGG
EEAFKRFMDDAFEQGIRVCTDGIYNHTSTEHEWFQRAVHGEEKYINYYVQ
RNGREKIGERDSDGDIICKYRDPDGCISERVVVFPDVDRTHGLWVEINGK
SYHFYRSFYPFQVDLNLQNVDVLEEIVCMLGRELCSGVVAKRMDAALHWI
KKGGTNAEGLEETHTLMALFKAFVKHVNARAILLPEVVRDCRTVARYGGH
ATTWNGVQCSSEGDLLTAFEMQAALRESTYLRTVAPFWRATFEASATRTG
GGEWLNMLEHHDETYMGFYPREVRRWMGEYIRSAGGTLFKNGMSAAARLA
DCLQHERARVRGALVALYLAVGTPMVYQGSELWRTRSAWPFARAQARRLH
ARLQQLGVYVCERACFDARWLQRGPLPRAAFELDDDDDDDGVEEQQRVSE
TVRRLNEARATMHALRGGEVRAVDSAHADVLAVGRGAAGRRALLGVVSMC
TCERELRVPARQLRALWRGAWPPPAHALLDVLSSQRVRVQCGADALVRWR
VRPFDAQLLRLPDAAADGAFDSNFEL*
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spliced messenger RNA

>Ggra9047.t1 ID=Ggra9047.t1|Name=Ggra9047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000176_pilon:35847..38027- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAGCATCCGGGAACACGCAGGAAGAGGCCAGCGACTCGGAGTC
GGGCAGGGAGAACGAGCAGCTGAGCAATCGCGAACTGACAGCGATCATCG
AGCAGCAAGAGCTGGAGATAGCAGCGTTGAGAGAGCAGCTTCACGCCATA
TGCTCCGCAAACGCACCGGCTTCGCCTGAAGACGTTGCGCCTTGTGGGAG
CTCGTTGCACGCGCTGCAAAGAGGGCTGACGACAGTGGATGACGTACGCG
CCGTAGGCACGCTGTGCAAGCAATTGGTGGGCGTGCAGTGGGAACGTCTT
CAAGAAGTATTCTTCAAACAAGTGCAAGTTGCTCGAGACGCGCTGCCGGA
ACGGGTGCTGCAGTGGGAGGATAGTGTGGCCGAAGACTGGTACAAGGATG
CGTGGTACCTGCTGTACGTGCAGGACATGGGGGTGGAGGAAGGCAAAGAA
GAAGGAGACTTTGACAGCTTGCGAGCTATGCTACCGTACTTGAAACGACA
AGGATTCCGCAACTTGTGCGTGCTGCCGCACTACGAGTCGCCCATGGCAG
ACGGCGGGTACGATGTATCGCGCTACGAGCCGCGCGCGAGTCTGGGCGGT
GAAGAAGCGTTTAAACGGTTCATGGACGATGCATTCGAACAGGGGATTCG
GGTATGCACAGACGGAATCTACAACCACACGTCGACGGAACACGAGTGGT
TTCAACGCGCAGTACACGGCGAAGAAAAGTACATCAACTACTACGTGCAG
CGAAACGGGCGCGAGAAGATCGGCGAGCGCGACAGCGACGGGGACATTAT
CTGCAAGTACCGCGACCCGGACGGGTGCATAAGCGAGCGCGTGGTGGTAT
TCCCCGACGTAGACCGCACACACGGGCTGTGGGTAGAGATCAACGGCAAG
TCGTACCATTTCTACCGGTCGTTCTACCCGTTCCAGGTGGACCTGAACCT
GCAGAACGTGGATGTGCTGGAAGAGATTGTGTGCATGCTCGGGCGCGAGC
TGTGCAGCGGGGTGGTTGCCAAGCGCATGGACGCGGCGCTGCACTGGATC
AAGAAGGGCGGGACGAATGCGGAGGGGCTCGAGGAGACGCACACGCTGAT
GGCGCTGTTCAAGGCATTTGTGAAGCACGTGAACGCGCGCGCCATCCTGC
TGCCGGAGGTGGTGCGCGACTGCCGCACGGTGGCGCGCTACGGCGGGCAC
GCCACGACGTGGAACGGGGTGCAGTGCAGCAGCGAAGGCGACCTGCTGAC
GGCGTTCGAGATGCAGGCGGCGCTGCGCGAAAGCACGTACCTGCGCACAG
TGGCGCCGTTCTGGCGGGCGACGTTCGAAGCGAGCGCGACGCGCACGGGC
GGCGGCGAGTGGCTCAACATGTTGGAGCACCACGACGAGACGTACATGGG
CTTCTACCCGCGCGAGGTGCGGCGGTGGATGGGCGAGTACATCCGCTCGG
CCGGCGGCACGCTGTTCAAGAACGGCATGAGCGCGGCGGCGCGCCTTGCC
GACTGTCTGCAGCACGAGCGCGCGCGCGTGCGCGGCGCGCTGGTGGCGCT
GTACCTCGCCGTCGGCACGCCCATGGTGTACCAGGGCAGCGAGCTGTGGC
GTACGCGCAGCGCGTGGCCGTTTGCTCGCGCGCAGGCACGCCGCCTGCAC
GCGCGCCTGCAGCAGCTGGGCGTGTACGTATGCGAGCGCGCGTGCTTTGA
CGCGCGCTGGCTGCAGCGCGGGCCGCTACCGCGCGCCGCCTTTGAGCTCG
ACGACGACGACGACGACGACGGCGTCGAAGAGCAGCAGCGGGTGAGCGAG
ACGGTGCGGCGGCTCAACGAGGCGCGCGCGACGATGCACGCGCTGCGCGG
CGGCGAGGTGCGCGCGGTGGACAGCGCGCACGCGGACGTGCTGGCGGTGG
GGCGCGGCGCGGCGGGGCGGCGCGCGCTGCTGGGCGTGGTGAGTATGTGC
ACGTGCGAGCGCGAGCTGCGCGTGCCTGCGCGTCAGCTGCGCGCGCTGTG
GCGCGGCGCGTGGCCCCCCCCCGCGCACGCGCTGCTGGACGTGCTGAGCT
CGCAGCGCGTACGCGTGCAGTGCGGCGCCGACGCGCTGGTGCGCTGGCGC
GTGCGCCCCTTTGACGCGCAGCTGCTGCGTCTGCCCGACGCCGCCGCCGA
CGGCGCTTTCGATTCGAATTTTGAATTGTGA
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protein sequence of Ggra9047.t1

>Ggra9047.t1 ID=Ggra9047.t1|Name=Ggra9047.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=727bp
MSSASGNTQEEASDSESGRENEQLSNRELTAIIEQQELEIAALREQLHAI
CSANAPASPEDVAPCGSSLHALQRGLTTVDDVRAVGTLCKQLVGVQWERL
QEVFFKQVQVARDALPERVLQWEDSVAEDWYKDAWYLLYVQDMGVEEGKE
EGDFDSLRAMLPYLKRQGFRNLCVLPHYESPMADGGYDVSRYEPRASLGG
EEAFKRFMDDAFEQGIRVCTDGIYNHTSTEHEWFQRAVHGEEKYINYYVQ
RNGREKIGERDSDGDIICKYRDPDGCISERVVVFPDVDRTHGLWVEINGK
SYHFYRSFYPFQVDLNLQNVDVLEEIVCMLGRELCSGVVAKRMDAALHWI
KKGGTNAEGLEETHTLMALFKAFVKHVNARAILLPEVVRDCRTVARYGGH
ATTWNGVQCSSEGDLLTAFEMQAALRESTYLRTVAPFWRATFEASATRTG
GGEWLNMLEHHDETYMGFYPREVRRWMGEYIRSAGGTLFKNGMSAAARLA
DCLQHERARVRGALVALYLAVGTPMVYQGSELWRTRSAWPFARAQARRLH
ARLQQLGVYVCERACFDARWLQRGPLPRAAFELDDDDDDDGVEEQQRVSE
TVRRLNEARATMHALRGGEVRAVDSAHADVLAVGRGAAGRRALLGVVSMC
TCERELRVPARQLRALWRGAWPPPAHALLDVLSSQRVRVQCGADALVRWR
VRPFDAQLLRLPDAAADGAFDSNFEL*
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mRNA from alignment at tig00000176_pilon:35847..38027-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9047.t1 ID=Ggra9047.t1|Name=Ggra9047.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00000176_pilon:35847..38027- (Gracilaria gracilis GNS1m male)
ATGTCTTCAGCATCCGGGAACACGCAGGAAGAGGCCAGCGACTCGGAGTC
GGGCAGGGAGAACGAGCAGCTGAGCAATCGCGAACTGACAGCGATCATCG
AGCAGCAAGAGCTGGAGATAGCAGCGTTGAGAGAGCAGCTTCACGCCATA
TGCTCCGCAAACGCACCGGCTTCGCCTGAAGACGTTGCGCCTTGTGGGAG
CTCGTTGCACGCGCTGCAAAGAGGGCTGACGACAGTGGATGACGTACGCG
CCGTAGGCACGCTGTGCAAGCAATTGGTGGGCGTGCAGTGGGAACGTCTT
CAAGAAGTATTCTTCAAACAAGTGCAAGTTGCTCGAGACGCGCTGCCGGA
ACGGGTGCTGCAGTGGGAGGATAGTGTGGCCGAAGACTGGTACAAGGATG
CGTGGTACCTGCTGTACGTGCAGGACATGGGGGTGGAGGAAGGCAAAGAA
GAAGGAGACTTTGACAGCTTGCGAGCTATGCTACCGTACTTGAAACGACA
AGGATTCCGCAACTTGTGCGTGCTGCCGCACTACGAGTCGCCCATGGCAG
ACGGCGGGTACGATGTATCGCGCTACGAGCCGCGCGCGAGTCTGGGCGGT
GAAGAAGCGTTTAAACGGTTCATGGACGATGCATTCGAACAGGGGATTCG
GGTATGCACAGACGGAATCTACAACCACACGTCGACGGAACACGAGTGGT
TTCAACGCGCAGTACACGGCGAAGAAAAGTACATCAACTACTACGTGCAG
CGAAACGGGCGCGAGAAGATCGGCGAGCGCGACAGCGACGGGGACATTAT
CTGCAAGTACCGCGACCCGGACGGGTGCATAAGCGAGCGCGTGGTGGTAT
TCCCCGACGTAGACCGCACACACGGGCTGTGGGTAGAGATCAACGGCAAG
TCGTACCATTTCTACCGGTCGTTCTACCCGTTCCAGGTGGACCTGAACCT
GCAGAACGTGGATGTGCTGGAAGAGATTGTGTGCATGCTCGGGCGCGAGC
TGTGCAGCGGGGTGGTTGCCAAGCGCATGGACGCGGCGCTGCACTGGATC
AAGAAGGGCGGGACGAATGCGGAGGGGCTCGAGGAGACGCACACGCTGAT
GGCGCTGTTCAAGGCATTTGTGAAGCACGTGAACGCGCGCGCCATCCTGC
TGCCGGAGGTGGTGCGCGACTGCCGCACGGTGGCGCGCTACGGCGGGCAC
GCCACGACGTGGAACGGGGTGCAGTGCAGCAGCGAAGGCGACCTGCTGAC
GGCGTTCGAGATGCAGGCGGCGCTGCGCGAAAGCACGTACCTGCGCACAG
TGGCGCCGTTCTGGCGGGCGACGTTCGAAGCGAGCGCGACGCGCACGGGC
GGCGGCGAGTGGCTCAACATGTTGGAGCACCACGACGAGACGTACATGGG
CTTCTACCCGCGCGAGGTGCGGCGGTGGATGGGCGAGTACATCCGCTCGG
CCGGCGGCACGCTGTTCAAGAACGGCATGAGCGCGGCGGCGCGCCTTGCC
GACTGTCTGCAGCACGAGCGCGCGCGCGTGCGCGGCGCGCTGGTGGCGCT
GTACCTCGCCGTCGGCACGCCCATGGTGTACCAGGGCAGCGAGCTGTGGC
GTACGCGCAGCGCGTGGCCGTTTGCTCGCGCGCAGGCACGCCGCCTGCAC
GCGCGCCTGCAGCAGCTGGGCGTGTACGTATGCGAGCGCGCGTGCTTTGA
CGCGCGCTGGCTGCAGCGCGGGCCGCTACCGCGCGCCGCCTTTGAGCTCG
ACGACGACGACGACGACGACGGCGTCGAAGAGCAGCAGCGGGTGAGCGAG
ACGGTGCGGCGGCTCAACGAGGCGCGCGCGACGATGCACGCGCTGCGCGG
CGGCGAGGTGCGCGCGGTGGACAGCGCGCACGCGGACGTGCTGGCGGTGG
GGCGCGGCGCGGCGGGGCGGCGCGCGCTGCTGGGCGTGGTGAGTATGTGC
ACGTGCGAGCGCGAGCTGCGCGTGCCTGCGCGTCAGCTGCGCGCGCTGTG
GCGCGGCGCGTGGCCCCCCCCCGCGCACGCGCTGCTGGACGTGCTGAGCT
CGCAGCGCGTACGCGTGCAGTGCGGCGCCGACGCGCTGGTGCGCTGGCGC
GTGCGCCCCTTTGACGCGCAGCTGCTGCGTCTGCCCGACGCCGCCGCCGA
CGGCGCTTTCGATTCGAATTTTGAATTGTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:35847..38027-

>Ggra9047.t1 ID=Ggra9047.t1|Name=Ggra9047.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2181bp|location=Sequence derived from alignment at tig00000176_pilon:35847..38027- (Gracilaria gracilis GNS1m male)
ATGTCTTCAGCATCCGGGAACACGCAGGAAGAGGCCAGCGACTCGGAGTC
GGGCAGGGAGAACGAGCAGCTGAGCAATCGCGAACTGACAGCGATCATCG
AGCAGCAAGAGCTGGAGATAGCAGCGTTGAGAGAGCAGCTTCACGCCATA
TGCTCCGCAAACGCACCGGCTTCGCCTGAAGACGTTGCGCCTTGTGGGAG
CTCGTTGCACGCGCTGCAAAGAGGGCTGACGACAGTGGATGACGTACGCG
CCGTAGGCACGCTGTGCAAGCAATTGGTGGGCGTGCAGTGGGAACGTCTT
CAAGAAGTATTCTTCAAACAAGTGCAAGTTGCTCGAGACGCGCTGCCGGA
ACGGGTGCTGCAGTGGGAGGATAGTGTGGCCGAAGACTGGTACAAGGATG
CGTGGTACCTGCTGTACGTGCAGGACATGGGGGTGGAGGAAGGCAAAGAA
GAAGGAGACTTTGACAGCTTGCGAGCTATGCTACCGTACTTGAAACGACA
AGGATTCCGCAACTTGTGCGTGCTGCCGCACTACGAGTCGCCCATGGCAG
ACGGCGGGTACGATGTATCGCGCTACGAGCCGCGCGCGAGTCTGGGCGGT
GAAGAAGCGTTTAAACGGTTCATGGACGATGCATTCGAACAGGGGATTCG
GGTATGCACAGACGGAATCTACAACCACACGTCGACGGAACACGAGTGGT
TTCAACGCGCAGTACACGGCGAAGAAAAGTACATCAACTACTACGTGCAG
CGAAACGGGCGCGAGAAGATCGGCGAGCGCGACAGCGACGGGGACATTAT
CTGCAAGTACCGCGACCCGGACGGGTGCATAAGCGAGCGCGTGGTGGTAT
TCCCCGACGTAGACCGCACACACGGGCTGTGGGTAGAGATCAACGGCAAG
TCGTACCATTTCTACCGGTCGTTCTACCCGTTCCAGGTGGACCTGAACCT
GCAGAACGTGGATGTGCTGGAAGAGATTGTGTGCATGCTCGGGCGCGAGC
TGTGCAGCGGGGTGGTTGCCAAGCGCATGGACGCGGCGCTGCACTGGATC
AAGAAGGGCGGGACGAATGCGGAGGGGCTCGAGGAGACGCACACGCTGAT
GGCGCTGTTCAAGGCATTTGTGAAGCACGTGAACGCGCGCGCCATCCTGC
TGCCGGAGGTGGTGCGCGACTGCCGCACGGTGGCGCGCTACGGCGGGCAC
GCCACGACGTGGAACGGGGTGCAGTGCAGCAGCGAAGGCGACCTGCTGAC
GGCGTTCGAGATGCAGGCGGCGCTGCGCGAAAGCACGTACCTGCGCACAG
TGGCGCCGTTCTGGCGGGCGACGTTCGAAGCGAGCGCGACGCGCACGGGC
GGCGGCGAGTGGCTCAACATGTTGGAGCACCACGACGAGACGTACATGGG
CTTCTACCCGCGCGAGGTGCGGCGGTGGATGGGCGAGTACATCCGCTCGG
CCGGCGGCACGCTGTTCAAGAACGGCATGAGCGCGGCGGCGCGCCTTGCC
GACTGTCTGCAGCACGAGCGCGCGCGCGTGCGCGGCGCGCTGGTGGCGCT
GTACCTCGCCGTCGGCACGCCCATGGTGTACCAGGGCAGCGAGCTGTGGC
GTACGCGCAGCGCGTGGCCGTTTGCTCGCGCGCAGGCACGCCGCCTGCAC
GCGCGCCTGCAGCAGCTGGGCGTGTACGTATGCGAGCGCGCGTGCTTTGA
CGCGCGCTGGCTGCAGCGCGGGCCGCTACCGCGCGCCGCCTTTGAGCTCG
ACGACGACGACGACGACGACGGCGTCGAAGAGCAGCAGCGGGTGAGCGAG
ACGGTGCGGCGGCTCAACGAGGCGCGCGCGACGATGCACGCGCTGCGCGG
CGGCGAGGTGCGCGCGGTGGACAGCGCGCACGCGGACGTGCTGGCGGTGG
GGCGCGGCGCGGCGGGGCGGCGCGCGCTGCTGGGCGTGGTGAGTATGTGC
ACGTGCGAGCGCGAGCTGCGCGTGCCTGCGCGTCAGCTGCGCGCGCTGTG
GCGCGGCGCGTGGCCCCCCCCCGCGCACGCGCTGCTGGACGTGCTGAGCT
CGCAGCGCGTACGCGTGCAGTGCGGCGCCGACGCGCTGGTGCGCTGGCGC
GTGCGCCCCTTTGACGCGCAGCTGCTGCGTCTGCCCGACGCCGCCGCCGA
CGGCGCTTTCGATTCGAATTTTGAATTGTGA
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