Ggra9043.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9043.t1
Unique NameGgra9043.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length387
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:25786..26946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9043Ggra9043Gracilaria gracilis GNS1m malegenetig00000176_pilon 25786..26946 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1.start1Ggra9043.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 25786..25788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1.CDS1Ggra9043.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 25786..26946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1.exon1Ggra9043.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 25786..26946 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1.stop1Ggra9043.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 26944..26946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9043.t1Ggra9043.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 25786..26946 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=387bp
MTGTPRVPVPASPNPRTKPKPRARPTSAATPPATPRRPEKRKPPSSPSTS
SARPRKRAREPPRNPKRGARPLSAAQSQSTLTLLGAPFLPDVKLVAPHSR
VFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLAPGGLGAICSRL
DTRAVLRLNNYYKVCQMNRRVPIPHHGDPFASHRDPYHEGPNPEALTYWC
EKFLQHLRFSMSPVEFTYLLQCKSISFAKDESFSADPKMRGMGRATLFKE
WLATPCADQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMW
SKERHCLEALSHGVGTALTIPCSELHAAKLMTEIRLYINRPYTRRFHMRS
RADGLLPRHINAALSQLKEQGWGGKASLRVGLFDFV*
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spliced messenger RNA

>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000176_pilon:25786..26946+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGGCACACCTCGAGTGCCTGTACCGGCGTCTCCCAATCCGCGCAC
CAAGCCAAAGCCGCGTGCGCGTCCCACCTCCGCTGCCACACCGCCCGCAA
CGCCTCGAAGACCAGAGAAGCGAAAGCCACCTTCCTCACCATCCACCTCC
TCCGCCCGCCCTCGCAAGCGCGCCCGAGAGCCGCCGCGAAACCCCAAGCG
CGGCGCACGTCCGCTCTCAGCGGCGCAGAGCCAGTCCACACTCACACTGC
TCGGCGCGCCGTTTCTTCCAGATGTGAAGCTCGTCGCGCCCCATAGCAGA
GTGTTTGCGCGCGAGTTCCAGTGTCTGTTGTTTTCGTTTGGTGATGTTCG
CTTCTGCGCGAGGGACACGCTTGAATTGGTGGAGGATTGTGTGCGTGATG
AGGTGCGTCGTCTTGCGCCAGGTGGTCTTGGTGCCATTTGTTCTCGCCTG
GATACAAGGGCTGTGCTTAGGTTGAATAACTACTATAAGGTGTGTCAGAT
GAACAGGAGAGTACCTATCCCACATCATGGCGACCCCTTTGCTTCTCATA
GGGATCCCTATCATGAAGGCCCCAACCCTGAAGCGCTTACGTATTGGTGC
GAGAAATTTCTCCAGCACCTGCGCTTTAGTATGTCGCCAGTCGAGTTTAC
GTATCTACTGCAGTGCAAGTCCATCTCGTTCGCTAAGGATGAGAGCTTTT
CCGCTGACCCCAAGATGCGAGGTATGGGTCGAGCAACTCTCTTCAAGGAA
TGGTTAGCAACTCCTTGTGCAGACCAAGATATACCGGCCGTGGCGCACTT
GACTTGGGAATTAACGGGCCAGCTTGTTCAAACAGCGCTCTTGTGCCGCT
ACAACTGCGAACTTCAATCTCAATTGCCTAGTTCTAGTTCGTTCATGTGG
AGCAAAGAGAGACATTGTCTGGAAGCACTTAGTCATGGCGTCGGTACCGC
TCTTACTATTCCTTGCTCCGAGCTCCATGCAGCCAAACTGATGACAGAGA
TTCGGCTTTACATCAATCGTCCGTACACTCGCAGATTTCATATGCGATCT
CGAGCGGATGGATTACTGCCACGCCATATCAATGCTGCACTGAGCCAATT
GAAAGAGCAAGGTTGGGGCGGTAAGGCTAGTCTCCGTGTTGGGCTGTTTG
ATTTTGTTTGA
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protein sequence of Ggra9043.t1

>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=387bp
MTGTPRVPVPASPNPRTKPKPRARPTSAATPPATPRRPEKRKPPSSPSTS
SARPRKRAREPPRNPKRGARPLSAAQSQSTLTLLGAPFLPDVKLVAPHSR
VFAREFQCLLFSFGDVRFCARDTLELVEDCVRDEVRRLAPGGLGAICSRL
DTRAVLRLNNYYKVCQMNRRVPIPHHGDPFASHRDPYHEGPNPEALTYWC
EKFLQHLRFSMSPVEFTYLLQCKSISFAKDESFSADPKMRGMGRATLFKE
WLATPCADQDIPAVAHLTWELTGQLVQTALLCRYNCELQSQLPSSSSFMW
SKERHCLEALSHGVGTALTIPCSELHAAKLMTEIRLYINRPYTRRFHMRS
RADGLLPRHINAALSQLKEQGWGGKASLRVGLFDFV*
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mRNA from alignment at tig00000176_pilon:25786..26946+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000176_pilon:25786..26946+ (Gracilaria gracilis GNS1m male)
ATGACCGGCACACCTCGAGTGCCTGTACCGGCGTCTCCCAATCCGCGCAC
CAAGCCAAAGCCGCGTGCGCGTCCCACCTCCGCTGCCACACCGCCCGCAA
CGCCTCGAAGACCAGAGAAGCGAAAGCCACCTTCCTCACCATCCACCTCC
TCCGCCCGCCCTCGCAAGCGCGCCCGAGAGCCGCCGCGAAACCCCAAGCG
CGGCGCACGTCCGCTCTCAGCGGCGCAGAGCCAGTCCACACTCACACTGC
TCGGCGCGCCGTTTCTTCCAGATGTGAAGCTCGTCGCGCCCCATAGCAGA
GTGTTTGCGCGCGAGTTCCAGTGTCTGTTGTTTTCGTTTGGTGATGTTCG
CTTCTGCGCGAGGGACACGCTTGAATTGGTGGAGGATTGTGTGCGTGATG
AGGTGCGTCGTCTTGCGCCAGGTGGTCTTGGTGCCATTTGTTCTCGCCTG
GATACAAGGGCTGTGCTTAGGTTGAATAACTACTATAAGGTGTGTCAGAT
GAACAGGAGAGTACCTATCCCACATCATGGCGACCCCTTTGCTTCTCATA
GGGATCCCTATCATGAAGGCCCCAACCCTGAAGCGCTTACGTATTGGTGC
GAGAAATTTCTCCAGCACCTGCGCTTTAGTATGTCGCCAGTCGAGTTTAC
GTATCTACTGCAGTGCAAGTCCATCTCGTTCGCTAAGGATGAGAGCTTTT
CCGCTGACCCCAAGATGCGAGGTATGGGTCGAGCAACTCTCTTCAAGGAA
TGGTTAGCAACTCCTTGTGCAGACCAAGATATACCGGCCGTGGCGCACTT
GACTTGGGAATTAACGGGCCAGCTTGTTCAAACAGCGCTCTTGTGCCGCT
ACAACTGCGAACTTCAATCTCAATTGCCTAGTTCTAGTTCGTTCATGTGG
AGCAAAGAGAGACATTGTCTGGAAGCACTTAGTCATGGCGTCGGTACCGC
TCTTACTATTCCTTGCTCCGAGCTCCATGCAGCCAAACTGATGACAGAGA
TTCGGCTTTACATCAATCGTCCGTACACTCGCAGATTTCATATGCGATCT
CGAGCGGATGGATTACTGCCACGCCATATCAATGCTGCACTGAGCCAATT
GAAAGAGCAAGGTTGGGGCGGTAAGGCTAGTCTCCGTGTTGGGCTGTTTG
ATTTTGTTTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:25786..26946+

>Ggra9043.t1 ID=Ggra9043.t1|Name=Ggra9043.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000176_pilon:25786..26946+ (Gracilaria gracilis GNS1m male)
ATGACCGGCACACCTCGAGTGCCTGTACCGGCGTCTCCCAATCCGCGCAC
CAAGCCAAAGCCGCGTGCGCGTCCCACCTCCGCTGCCACACCGCCCGCAA
CGCCTCGAAGACCAGAGAAGCGAAAGCCACCTTCCTCACCATCCACCTCC
TCCGCCCGCCCTCGCAAGCGCGCCCGAGAGCCGCCGCGAAACCCCAAGCG
CGGCGCACGTCCGCTCTCAGCGGCGCAGAGCCAGTCCACACTCACACTGC
TCGGCGCGCCGTTTCTTCCAGATGTGAAGCTCGTCGCGCCCCATAGCAGA
GTGTTTGCGCGCGAGTTCCAGTGTCTGTTGTTTTCGTTTGGTGATGTTCG
CTTCTGCGCGAGGGACACGCTTGAATTGGTGGAGGATTGTGTGCGTGATG
AGGTGCGTCGTCTTGCGCCAGGTGGTCTTGGTGCCATTTGTTCTCGCCTG
GATACAAGGGCTGTGCTTAGGTTGAATAACTACTATAAGGTGTGTCAGAT
GAACAGGAGAGTACCTATCCCACATCATGGCGACCCCTTTGCTTCTCATA
GGGATCCCTATCATGAAGGCCCCAACCCTGAAGCGCTTACGTATTGGTGC
GAGAAATTTCTCCAGCACCTGCGCTTTAGTATGTCGCCAGTCGAGTTTAC
GTATCTACTGCAGTGCAAGTCCATCTCGTTCGCTAAGGATGAGAGCTTTT
CCGCTGACCCCAAGATGCGAGGTATGGGTCGAGCAACTCTCTTCAAGGAA
TGGTTAGCAACTCCTTGTGCAGACCAAGATATACCGGCCGTGGCGCACTT
GACTTGGGAATTAACGGGCCAGCTTGTTCAAACAGCGCTCTTGTGCCGCT
ACAACTGCGAACTTCAATCTCAATTGCCTAGTTCTAGTTCGTTCATGTGG
AGCAAAGAGAGACATTGTCTGGAAGCACTTAGTCATGGCGTCGGTACCGC
TCTTACTATTCCTTGCTCCGAGCTCCATGCAGCCAAACTGATGACAGAGA
TTCGGCTTTACATCAATCGTCCGTACACTCGCAGATTTCATATGCGATCT
CGAGCGGATGGATTACTGCCACGCCATATCAATGCTGCACTGAGCCAATT
GAAAGAGCAAGGTTGGGGCGGTAAGGCTAGTCTCCGTGTTGGGCTGTTTG
ATTTTGTTTGA
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