Ggra9040.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9040.t1
Unique NameGgra9040.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1390931..1392601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9040Ggra9040Gracilaria gracilis GNS1m malegenetig00000860_pilon 1390931..1392601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1Ggra9040.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1390931..1392601 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1.start1Ggra9040.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1390931..1390933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1.CDS1Ggra9040.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1390931..1391036 +
Ggra9040.t1.CDS2Ggra9040.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1391120..1391296 +
Ggra9040.t1.CDS3Ggra9040.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1392435..1392503 +
Ggra9040.t1.CDS4Ggra9040.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1392588..1392601 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1.exon1Ggra9040.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1390931..1391036 +
Ggra9040.t1.exon2Ggra9040.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1391120..1391296 +
Ggra9040.t1.exon3Ggra9040.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 1392435..1392503 +
Ggra9040.t1.exon4Ggra9040.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 1392588..1392601 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1.intron1Ggra9040.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1391037..1391119 +
Ggra9040.t1.intron2Ggra9040.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1391297..1392434 +
Ggra9040.t1.intron3Ggra9040.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1392504..1392587 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9040.t1.stop1Ggra9040.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1392599..1392601 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9040.t1 ID=Ggra9040.t1|Name=Ggra9040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=122bp
MFFVIVARPGHQSILVEGRNQLPTIPYSSDVVHFPKKRCCTVVLFEVLGG
IEPKTKWDGKWVAQCEVEAVVLNPPSQLVANNLQEYKLRGLEINEGGTIE
ERQHETGSRVLKVKVTSEREG*
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spliced messenger RNA

>Ggra9040.t1 ID=Ggra9040.t1|Name=Ggra9040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000860_pilon:1390931..1392601+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTTTGTCATCGTCGCCCGACCTGGACACCAGTCCATTCTGGTTGA
AGGCCGTAATCAGCTTCCGACAATTCCGTACTCAAGTGATGTGGTACATT
TTCCTAAAAAGAGGTGTTGCACCGTGGTCTTGTTTGAGGTGCTGGGCGGA
ATCGAACCGAAGACGAAGTGGGACGGCAAATGGGTAGCACAGTGTGAAGT
TGAAGCCGTGGTGCTAAATCCACCGTCGCAACTAGTTGCAAACAACTTGC
AAGAATACAAGTTACGTGGATTAGAAATAAACGaagGCGGAACTATTGAG
GAACGTCAACATGAGACAGGAAGCCGTGTTTTGAAAGTGAAAGTGACTTC
GGAGCGCGAAGGGTGA
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protein sequence of Ggra9040.t1

>Ggra9040.t1 ID=Ggra9040.t1|Name=Ggra9040.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=122bp
MFFVIVARPGHQSILVEGRNQLPTIPYSSDVVHFPKKRCCTVVLFEVLGG
IEPKTKWDGKWVAQCEVEAVVLNPPSQLVANNLQEYKLRGLEINEGGTIE
ERQHETGSRVLKVKVTSEREG*
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mRNA from alignment at tig00000860_pilon:1390931..1392601+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9040.t1 ID=Ggra9040.t1|Name=Ggra9040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00000860_pilon:1390931..1392601+ (Gracilaria gracilis GNS1m male)
ATGTTCTTTGTCATCGTCGCCCGACCTGGACACCAGTCCATTCTGGTTGA
AGGCCGTAATCAGCTTCCGACAATTCCGTACTCAAGTGATGTGGTACATT
TTCCTAGTAAGTTCTGGAACCTGGTACGAGAGAGGTTGAATTGCTGTCTA
GAACTTAAACTTTCCTTCGCGTGGAATGCTGGTCAAAAGAAAAGAGGTGT
TGCACCGTGGTCTTGTTTGAGGTGCTGGGCGGAATCGAACCGAAGACGAA
GTGGGACGGCAAATGGGTAGCACAGTGTGAAGTTGAAGCCGTGGTGCTAA
ATCCACCGTCGCAACTAGTTGCAAACAACTTGCAAGAATACAAGTTACGT
GGATTAGAAATAAACGGTGAGCGCTTACAGACCTTACTCGCGTCCAAGGT
GATTAGAGAGAGCCAGAGTGTGGATGAAAGAGAAGCTAAATGATGGAGGA
TACAAGGTGGAAACTCCATCCATTATTTAAAAGGTGTGTGTGAGGAAACA
GAGGAGTGCGTTCTCAACTACTTCATGGAACGCACAGAAGTGCCCTCGTT
CTGGGTTTTCAATGACGACAAAAAAAGGCTGGCCTACCGTTACAAAACGG
AGAACAAAACTGGAATTGACATAGACGGTGACGTCTTACCAATGAAGTTC
CTCGTACCAGAAACCGTTGGTGCAGGAGCGTTTCTTCTTTGCCACAAAGA
GCAAGCTTCCACGGAAAGCGGGACAGTGTCAGCCGGCGTCAACATCTGCT
CAtacaccgcagagattgccgcaatgaaagcagctttggatcgggtttca
aacttgaacggtaaagtggtaagggttttcaccgacagccaggcctggct
gctattgtttcaatgttgccaagtaatcttcgcaaacagccgcacaacgc
gcaaaacctagcgcgttctgtcgataagttgagcggaaggaacaacgtgt
accgttggtaccgacggtaccgacggtatctacattgcttggataccaag
tcattgcggcattcctcaaaatgaagcggtagacaagctggcaaaagccg
ggctccaaattgagcttgcaaaacaagtcagtgtcccgttggacatgctt
gatgtccgagcccgtttgtagtcgaaacgaaaaagccgaccgctgctcaa
agagtttccagatcttatctcgggagaaagagcacttcggagggcagagg
tagccttagcgcagttctacaccgggcacgtctcgtcactgcaccctgtt
gcttcttatctagagaaaaagccactgcaatgtaactgctgcactaatgc
actcaagcaccaatgctgcgatgccccttaacaaatgcccttcgtcgcga
cctttttgcgagcacgtaacccaaaaacaagtcttctgtatcgagtctga
ttagacatgaaccgcaaaagttcttggccttattgaaaagagagctttct
ctgaaagttctactgtagtcttgtaataaaggactactgtccacaattaa
gaagaagGCGGAACTATTGAGGAACGTCAACATGAGACAGGAAGCCGTGT
TTTGAAAGTGAAAGTGACTTCGGGTTTGTTGGTCTACttcttcttcttct
tgattatgggcgttgtgttctaattcctaacaTTGTAGCTCTACATGAAA
TGCTCAGAGCGCGAAGGGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1390931..1392601+

>Ggra9040.t1 ID=Ggra9040.t1|Name=Ggra9040.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=366bp|location=Sequence derived from alignment at tig00000860_pilon:1390931..1392601+ (Gracilaria gracilis GNS1m male)
ATGTTCTTTGTCATCGTCGCCCGACCTGGACACCAGTCCATTCTGGTTGA
AGGCCGTAATCAGCTTCCGACAATTCCGTACTCAAGTGATGTGGTACATT
TTCCTAAAAAGAGGTGTTGCACCGTGGTCTTGTTTGAGGTGCTGGGCGGA
ATCGAACCGAAGACGAAGTGGGACGGCAAATGGGTAGCACAGTGTGAAGT
TGAAGCCGTGGTGCTAAATCCACCGTCGCAACTAGTTGCAAACAACTTGC
AAGAATACAAGTTACGTGGATTAGAAATAAACGaagGCGGAACTATTGAG
GAACGTCAACATGAGACAGGAAGCCGTGTTTTGAAAGTGAAAGTGACTTC
GGAGCGCGAAGGGTGA
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