Ggra9036.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9036.t1
Unique NameGgra9036.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length443
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1384576..1385904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR298CT
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K03686
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Evalue3.7e-150
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9036Ggra9036Gracilaria gracilis GNS1m malegenetig00000860_pilon 1384576..1385904 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9036.t1.stop1Ggra9036.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1384576..1384578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9036.t1.CDS1Ggra9036.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1384576..1385904 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9036.t1.exon1Ggra9036.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1384576..1385904 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9036.t1.start1Ggra9036.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1385902..1385904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9036.t1Ggra9036.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1384576..1385904 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9036.t1 ID=Ggra9036.t1|Name=Ggra9036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=443bp
MSAINTPAFTAAAPLSSRRPATTFHSPLTATRPPRSGPLPPRSRRVTVPR
ASGDYYQTLGISRGATEKEIKTAFRQKARKLHPDVNSAPDAKERFQEVSR
AYEVLSDSNLRQRYDQFGEAGVKGASQPGFGDFGSQDFGSFSDIFDTFFS
GGQASARARRRAGPQPGDDLRLDVDIPFETAVFGAEQKIRFSHLETCSTC
SGSGVKPGRKPRSCSSCDGSGSVTQVVRTPLGMFQQTTTCTTCRGTGEVV
DEFCGSCGGRGRNQVTKQLQITIPAGVDSGSRLRVRNEGDAGAKGGPPGD
LYVVLRVKESSEFSREGTNIYSKISISYLDAILGRSVPIKTVDGVVDMNI
SSGTQPGSVQRIHGKGVPKLGNSTVRGDHFVTINVKIPTRLNSEERKLVQ
KLDELSSGGAGKNGKATAGATSEKSKKTSKKSEGFFNFGKKK*
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spliced messenger RNA

>Ggra9036.t1 ID=Ggra9036.t1|Name=Ggra9036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000860_pilon:1384576..1385904- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCATAAACACTCCTGCGTTCACTGCTGCAGCCCCCCTCTCCTC
ACGCCGACCAGCCACTACCTTTCACTCGCCGCTTACCGCGACTCGTCCTC
CACGTTCGGGGCCGCTACCGCCGCGCTCGCGTCGTGTCACAGTCCCCCGC
GCATCAGGTGACTATTATCAGACACTTGGAATTTCCCGCGGTGCCACCGA
GAAGGAGATAAAGACTGCCTTTCGTCAGAAAGCACGTAAACTTCACCCAG
ACGTTAACAGCGCTCCCGATGCAAAGGAGCGTTTTCAGGAAGTTTCTCGC
GCGTATGAAGTTCTCTCCGATTCCAATTTGCGTCAAAGATACGACCAGTT
TGGAGAAGCTGGTGTGAAGGGGGCTTCTCAACCTGGATTTGGTGACTTTG
GTTCCCAAGACTTCGGAAGCTTCTCGGATATTTTCGACACTTTCTTCAGC
GGAGGCCAAGCCAGCGCGCGTGCGAGGCGCAGAGCTGGCCCGCAGCCTGG
AGATGATTTACGTTTGGATGTTGACATACCCTTCGAGACGGCTGTGTTCG
GTGCTGAGCAGAAGATTCGTTTCAGTCATTTAGAAACATGTTCTACGTGC
TCTGGAAGCGGTGTCAAGCCTGGCAGAAAGCCAAGAAGTTGCTCGTCCTG
CGATGGTTCTGGCTCTGTCACTCAGGTTGTACGAACTCCTTTGGGAATGT
TCCAGCAGACTACAACTTGTACCACCTGCCGAGGTACTGGAGAAGTTGTT
GATGAATTCTGCGGTTCATGTGGAGGAAGGGGAAGAAATCAGGTTACGAA
GCAACTTCAAATTACCATTCCGGCTGGGGTGGATTCTGGCAGCAGACTTC
GTGTCAGGAATGAGGGTGATGCTGGGGCAAAGGGTGGCCCCCCTGGAGAC
CTGTATGTTGTTCTCAGGGTCAAGGAATCGTCAGAATTTTCAAGAGAAGG
AACAAACATTTACTCGAAGATTTCAATATCTTACCTTGATGCCATTCTTG
GGCGAAGCGTTCCAATCAAGACGGTGGACGGTGTTGTGGATATGAACATT
TCTTCCGGCACCCAACCTGGCTCCGTGCAAAGAATTCACGGAAAGGGTGT
TCCAAAACTGGGTAATTCGACAGTGAGGGGTGATCACTTCGTAACCATTA
ATGTGAAGATTCCAACCAGGCTAAACAGCGAGGAGAGGAAGCTTGTTCAG
AAATTGGACGAGCTTTCTTCTGGAGGTGCCGGGAAGAATGGGAAAGCTAC
TGCAGGGGCCACCAGTGAAAAGTCCAAGAAGACTAGCAAGAAGAGCGAAG
GGTTTTTCAACTTTGGGAAGAAAAAGTGA
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protein sequence of Ggra9036.t1

>Ggra9036.t1 ID=Ggra9036.t1|Name=Ggra9036.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=443bp
MSAINTPAFTAAAPLSSRRPATTFHSPLTATRPPRSGPLPPRSRRVTVPR
ASGDYYQTLGISRGATEKEIKTAFRQKARKLHPDVNSAPDAKERFQEVSR
AYEVLSDSNLRQRYDQFGEAGVKGASQPGFGDFGSQDFGSFSDIFDTFFS
GGQASARARRRAGPQPGDDLRLDVDIPFETAVFGAEQKIRFSHLETCSTC
SGSGVKPGRKPRSCSSCDGSGSVTQVVRTPLGMFQQTTTCTTCRGTGEVV
DEFCGSCGGRGRNQVTKQLQITIPAGVDSGSRLRVRNEGDAGAKGGPPGD
LYVVLRVKESSEFSREGTNIYSKISISYLDAILGRSVPIKTVDGVVDMNI
SSGTQPGSVQRIHGKGVPKLGNSTVRGDHFVTINVKIPTRLNSEERKLVQ
KLDELSSGGAGKNGKATAGATSEKSKKTSKKSEGFFNFGKKK*
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mRNA from alignment at tig00000860_pilon:1384576..1385904-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9036.t1 ID=Ggra9036.t1|Name=Ggra9036.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1329bp|location=Sequence derived from alignment at tig00000860_pilon:1384576..1385904- (Gracilaria gracilis GNS1m male)
ATGTCCGCCATAAACACTCCTGCGTTCACTGCTGCAGCCCCCCTCTCCTC
ACGCCGACCAGCCACTACCTTTCACTCGCCGCTTACCGCGACTCGTCCTC
CACGTTCGGGGCCGCTACCGCCGCGCTCGCGTCGTGTCACAGTCCCCCGC
GCATCAGGTGACTATTATCAGACACTTGGAATTTCCCGCGGTGCCACCGA
GAAGGAGATAAAGACTGCCTTTCGTCAGAAAGCACGTAAACTTCACCCAG
ACGTTAACAGCGCTCCCGATGCAAAGGAGCGTTTTCAGGAAGTTTCTCGC
GCGTATGAAGTTCTCTCCGATTCCAATTTGCGTCAAAGATACGACCAGTT
TGGAGAAGCTGGTGTGAAGGGGGCTTCTCAACCTGGATTTGGTGACTTTG
GTTCCCAAGACTTCGGAAGCTTCTCGGATATTTTCGACACTTTCTTCAGC
GGAGGCCAAGCCAGCGCGCGTGCGAGGCGCAGAGCTGGCCCGCAGCCTGG
AGATGATTTACGTTTGGATGTTGACATACCCTTCGAGACGGCTGTGTTCG
GTGCTGAGCAGAAGATTCGTTTCAGTCATTTAGAAACATGTTCTACGTGC
TCTGGAAGCGGTGTCAAGCCTGGCAGAAAGCCAAGAAGTTGCTCGTCCTG
CGATGGTTCTGGCTCTGTCACTCAGGTTGTACGAACTCCTTTGGGAATGT
TCCAGCAGACTACAACTTGTACCACCTGCCGAGGTACTGGAGAAGTTGTT
GATGAATTCTGCGGTTCATGTGGAGGAAGGGGAAGAAATCAGGTTACGAA
GCAACTTCAAATTACCATTCCGGCTGGGGTGGATTCTGGCAGCAGACTTC
GTGTCAGGAATGAGGGTGATGCTGGGGCAAAGGGTGGCCCCCCTGGAGAC
CTGTATGTTGTTCTCAGGGTCAAGGAATCGTCAGAATTTTCAAGAGAAGG
AACAAACATTTACTCGAAGATTTCAATATCTTACCTTGATGCCATTCTTG
GGCGAAGCGTTCCAATCAAGACGGTGGACGGTGTTGTGGATATGAACATT
TCTTCCGGCACCCAACCTGGCTCCGTGCAAAGAATTCACGGAAAGGGTGT
TCCAAAACTGGGTAATTCGACAGTGAGGGGTGATCACTTCGTAACCATTA
ATGTGAAGATTCCAACCAGGCTAAACAGCGAGGAGAGGAAGCTTGTTCAG
AAATTGGACGAGCTTTCTTCTGGAGGTGCCGGGAAGAATGGGAAAGCTAC
TGCAGGGGCCACCAGTGAAAAGTCCAAGAAGACTAGCAAGAAGAGCGAAG
GGTTTTTCAACTTTGGGAAGAAAAAGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1384576..1385904-

>Ggra9036.t1 ID=Ggra9036.t1|Name=Ggra9036.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1329bp|location=Sequence derived from alignment at tig00000860_pilon:1384576..1385904- (Gracilaria gracilis GNS1m male)
ATGTCCGCCATAAACACTCCTGCGTTCACTGCTGCAGCCCCCCTCTCCTC
ACGCCGACCAGCCACTACCTTTCACTCGCCGCTTACCGCGACTCGTCCTC
CACGTTCGGGGCCGCTACCGCCGCGCTCGCGTCGTGTCACAGTCCCCCGC
GCATCAGGTGACTATTATCAGACACTTGGAATTTCCCGCGGTGCCACCGA
GAAGGAGATAAAGACTGCCTTTCGTCAGAAAGCACGTAAACTTCACCCAG
ACGTTAACAGCGCTCCCGATGCAAAGGAGCGTTTTCAGGAAGTTTCTCGC
GCGTATGAAGTTCTCTCCGATTCCAATTTGCGTCAAAGATACGACCAGTT
TGGAGAAGCTGGTGTGAAGGGGGCTTCTCAACCTGGATTTGGTGACTTTG
GTTCCCAAGACTTCGGAAGCTTCTCGGATATTTTCGACACTTTCTTCAGC
GGAGGCCAAGCCAGCGCGCGTGCGAGGCGCAGAGCTGGCCCGCAGCCTGG
AGATGATTTACGTTTGGATGTTGACATACCCTTCGAGACGGCTGTGTTCG
GTGCTGAGCAGAAGATTCGTTTCAGTCATTTAGAAACATGTTCTACGTGC
TCTGGAAGCGGTGTCAAGCCTGGCAGAAAGCCAAGAAGTTGCTCGTCCTG
CGATGGTTCTGGCTCTGTCACTCAGGTTGTACGAACTCCTTTGGGAATGT
TCCAGCAGACTACAACTTGTACCACCTGCCGAGGTACTGGAGAAGTTGTT
GATGAATTCTGCGGTTCATGTGGAGGAAGGGGAAGAAATCAGGTTACGAA
GCAACTTCAAATTACCATTCCGGCTGGGGTGGATTCTGGCAGCAGACTTC
GTGTCAGGAATGAGGGTGATGCTGGGGCAAAGGGTGGCCCCCCTGGAGAC
CTGTATGTTGTTCTCAGGGTCAAGGAATCGTCAGAATTTTCAAGAGAAGG
AACAAACATTTACTCGAAGATTTCAATATCTTACCTTGATGCCATTCTTG
GGCGAAGCGTTCCAATCAAGACGGTGGACGGTGTTGTGGATATGAACATT
TCTTCCGGCACCCAACCTGGCTCCGTGCAAAGAATTCACGGAAAGGGTGT
TCCAAAACTGGGTAATTCGACAGTGAGGGGTGATCACTTCGTAACCATTA
ATGTGAAGATTCCAACCAGGCTAAACAGCGAGGAGAGGAAGCTTGTTCAG
AAATTGGACGAGCTTTCTTCTGGAGGTGCCGGGAAGAATGGGAAAGCTAC
TGCAGGGGCCACCAGTGAAAAGTCCAAGAAGACTAGCAAGAAGAGCGAAG
GGTTTTTCAACTTTGGGAAGAAAAAGTGA
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