Ggra9034.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9034.t1
Unique NameGgra9034.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1380929..1381720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog436114.SYO3AOP1_0264
Preferred namerpsD
PFAMsRibosomal_S4,S4
Max annot lvl200783|Aquificae
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
Evalue7.83e-23
EggNOG OGsCOG0522@1|root,COG0522@2|Bacteria,2G402@200783|Aquificae
DescriptionOne of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9034Ggra9034Gracilaria gracilis GNS1m malegenetig00000860_pilon 1380929..1381720 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1.stop1Ggra9034.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1380929..1380931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1.CDS1Ggra9034.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1380929..1381720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1.exon1Ggra9034.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1380929..1381720 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1.start1Ggra9034.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1381718..1381720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1Ggra9034.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1380929..1381720 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MPVNYQLKNLRRLFGEASFLRPATETPATPLGKVARVTRRTPSDPPQKRT
KPPGGIPRAFFSEQPPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAM
FNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHG
HVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGA
SWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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spliced messenger RNA

>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000860_pilon:1380929..1381720- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTCAACTACCAGCTCAAAAACCTGCGCCGCCTCTTCGGCGAGGC
CAGTTTCCTTCGTCCCGCCACCGAAACACCTGCCACGCCGCTGGGCAAGG
TCGCGCGAGTGACGCGTCGAACGCCATCCGATCCGCCTCAGAAGCGCACC
AAGCCTCCCGGCGGCATACCACGCGCATTCTTCTCCGAACAGCCTCCGCG
TTCCATTCGAAACAAGGCGGTATCCTCGCAGCTGTTCTCGATCCACTTGT
TCGAGAAGCAAAAAATGAGGCTGTACTATGGCGCCATCCGCGACGCCATG
TTCAACAAGTACGTGCAAAAAGCAGCTAAGACGCGACATAACGTCGATGC
GCAGCTGATACGGCTCCTAGAACTTCGTCTCGACACATTCTTGTACCGCA
CTTCATTCACGAAAACACCCGCTCAGGCGCGCCAATGGATTTACCACGGA
CACGTACTGGTGAACGGCGACGTGGTGACGGTGAAGAGCTTTCAGATGAG
ACCGGGCGACATTATGAGCATTGCGCCACACCACGTAGAACTTGCGCTGC
AGGCGAGTTTAGAGAGCGCGCAGATGAGAAAGGGGTTCGGATGCGGCGCT
TCTTGGATTGTGAGCCGCGCCAACGTGGCGGGCATGTTGCCGTGGATGGA
GATCGATCGCGTGGGGTTATCGGCCGCTTTGGTGCGACTGCCGACGGATG
AGGAGGCGCGATCTATGACCAGGGCAGCTCTGTTCCCGTTTATTCGTGAC
GCCAACCTTAACCCGCTCGCGGCCATGCGCGCGTACCGATGA
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protein sequence of Ggra9034.t1

>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MPVNYQLKNLRRLFGEASFLRPATETPATPLGKVARVTRRTPSDPPQKRT
KPPGGIPRAFFSEQPPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAM
FNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHG
HVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGA
SWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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mRNA from alignment at tig00000860_pilon:1380929..1381720-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000860_pilon:1380929..1381720- (Gracilaria gracilis GNS1m male)
ATGCCCGTCAACTACCAGCTCAAAAACCTGCGCCGCCTCTTCGGCGAGGC
CAGTTTCCTTCGTCCCGCCACCGAAACACCTGCCACGCCGCTGGGCAAGG
TCGCGCGAGTGACGCGTCGAACGCCATCCGATCCGCCTCAGAAGCGCACC
AAGCCTCCCGGCGGCATACCACGCGCATTCTTCTCCGAACAGCCTCCGCG
TTCCATTCGAAACAAGGCGGTATCCTCGCAGCTGTTCTCGATCCACTTGT
TCGAGAAGCAAAAAATGAGGCTGTACTATGGCGCCATCCGCGACGCCATG
TTCAACAAGTACGTGCAAAAAGCAGCTAAGACGCGACATAACGTCGATGC
GCAGCTGATACGGCTCCTAGAACTTCGTCTCGACACATTCTTGTACCGCA
CTTCATTCACGAAAACACCCGCTCAGGCGCGCCAATGGATTTACCACGGA
CACGTACTGGTGAACGGCGACGTGGTGACGGTGAAGAGCTTTCAGATGAG
ACCGGGCGACATTATGAGCATTGCGCCACACCACGTAGAACTTGCGCTGC
AGGCGAGTTTAGAGAGCGCGCAGATGAGAAAGGGGTTCGGATGCGGCGCT
TCTTGGATTGTGAGCCGCGCCAACGTGGCGGGCATGTTGCCGTGGATGGA
GATCGATCGCGTGGGGTTATCGGCCGCTTTGGTGCGACTGCCGACGGATG
AGGAGGCGCGATCTATGACCAGGGCAGCTCTGTTCCCGTTTATTCGTGAC
GCCAACCTTAACCCGCTCGCGGCCATGCGCGCGTACCGATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1380929..1381720-

>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000860_pilon:1380929..1381720- (Gracilaria gracilis GNS1m male)
ATGCCCGTCAACTACCAGCTCAAAAACCTGCGCCGCCTCTTCGGCGAGGC
CAGTTTCCTTCGTCCCGCCACCGAAACACCTGCCACGCCGCTGGGCAAGG
TCGCGCGAGTGACGCGTCGAACGCCATCCGATCCGCCTCAGAAGCGCACC
AAGCCTCCCGGCGGCATACCACGCGCATTCTTCTCCGAACAGCCTCCGCG
TTCCATTCGAAACAAGGCGGTATCCTCGCAGCTGTTCTCGATCCACTTGT
TCGAGAAGCAAAAAATGAGGCTGTACTATGGCGCCATCCGCGACGCCATG
TTCAACAAGTACGTGCAAAAAGCAGCTAAGACGCGACATAACGTCGATGC
GCAGCTGATACGGCTCCTAGAACTTCGTCTCGACACATTCTTGTACCGCA
CTTCATTCACGAAAACACCCGCTCAGGCGCGCCAATGGATTTACCACGGA
CACGTACTGGTGAACGGCGACGTGGTGACGGTGAAGAGCTTTCAGATGAG
ACCGGGCGACATTATGAGCATTGCGCCACACCACGTAGAACTTGCGCTGC
AGGCGAGTTTAGAGAGCGCGCAGATGAGAAAGGGGTTCGGATGCGGCGCT
TCTTGGATTGTGAGCCGCGCCAACGTGGCGGGCATGTTGCCGTGGATGGA
GATCGATCGCGTGGGGTTATCGGCCGCTTTGGTGCGACTGCCGACGGATG
AGGAGGCGCGATCTATGACCAGGGCAGCTCTGTTCCCGTTTATTCGTGAC
GCCAACCTTAACCCGCTCGCGGCCATGCGCGCGTACCGATGA
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