Ggra9028.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9028.t1
Unique NameGgra9028.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1286323..1286700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703176.1
Preferred nameNFYB
PFAMsCBFD_NFYB_HMF
Max annot lvl2759|Eukaryota
KEGG koko:K08065,ko:K14799
KEGG Pathwayko04612,ko05152,ko05166,map04612,map05152,map05166
GOsGO:0000976,GO:0000981,GO:0001067,GO:0001654,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0007423,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0016070,GO:0016602,GO:0018130,GO:0019216,GO:0019218,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0022008,GO:0022603,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043410,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0044877,GO:0045540,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045676,GO:0045678,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0046532,GO:0046534,GO:0046890,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0062012,GO:0065007,GO:0070013,GO:0070491,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080090,GO:0090181,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0106118,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902531,GO:1902533,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000027,GO:2000112,GO:2001141
Evalue3.39e-57
EggNOG OGsCOG2036@1|root,KOG0869@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryK
BRITEko00000,ko00001,ko03000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9028Ggra9028Gracilaria gracilis GNS1m malegenetig00000860_pilon 1286323..1286700 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1.stop1Ggra9028.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1286323..1286325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1.CDS1Ggra9028.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1286323..1286700 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1.exon1Ggra9028.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1286323..1286700 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1.start1Ggra9028.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1286698..1286700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9028.t1Ggra9028.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1286323..1286700 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQEC
VSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLA
RYRETVMQEKGEDTKNTDASKHTSS*
back to top

spliced messenger RNA

>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000860_pilon:1286323..1286700- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGACGCAGAATGAGGAACCCGATCAAGGCGTGCGCGAACAGGA
TCGCTTCCTGCCCACCGCCAACATTGCGCGCATCATGAAGAAGGCGCTGC
CCGGAAACGCAAAGGTCGCAAAGGATGGCAAGGACACCGTGCAGGAGTGC
GTGTCCGAGTTCGTCAGCTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
GAGGGAGAAGAGAAAGACCATTAACGGCGATGACATCCTGTGGGCGATGA
GCACGCTCGGTTTTGACAAGTATATCGAACCGCTCAAGCATTATCTCGCT
CGTTATCGAGAAACAGTCATGCAGGAAAAGGGTGAAGACACCAAGAATAC
CGACGCTAGTAAGCACACCTCTTCCTAA
back to top

protein sequence of Ggra9028.t1

>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MAETQNEEPDQGVREQDRFLPTANIARIMKKALPGNAKVAKDGKDTVQEC
VSEFVSFITSEASDKCQREKRKTINGDDILWAMSTLGFDKYIEPLKHYLA
RYRETVMQEKGEDTKNTDASKHTSS*
back to top

mRNA from alignment at tig00000860_pilon:1286323..1286700-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000860_pilon:1286323..1286700- (Gracilaria gracilis GNS1m male)
ATGGCCGAGACGCAGAATGAGGAACCCGATCAAGGCGTGCGCGAACAGGA
TCGCTTCCTGCCCACCGCCAACATTGCGCGCATCATGAAGAAGGCGCTGC
CCGGAAACGCAAAGGTCGCAAAGGATGGCAAGGACACCGTGCAGGAGTGC
GTGTCCGAGTTCGTCAGCTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
GAGGGAGAAGAGAAAGACCATTAACGGCGATGACATCCTGTGGGCGATGA
GCACGCTCGGTTTTGACAAGTATATCGAACCGCTCAAGCATTATCTCGCT
CGTTATCGAGAAACAGTCATGCAGGAAAAGGGTGAAGACACCAAGAATAC
CGACGCTAGTAAGCACACCTCTTCCTAA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1286323..1286700-

>Ggra9028.t1 ID=Ggra9028.t1|Name=Ggra9028.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000860_pilon:1286323..1286700- (Gracilaria gracilis GNS1m male)
ATGGCCGAGACGCAGAATGAGGAACCCGATCAAGGCGTGCGCGAACAGGA
TCGCTTCCTGCCCACCGCCAACATTGCGCGCATCATGAAGAAGGCGCTGC
CCGGAAACGCAAAGGTCGCAAAGGATGGCAAGGACACCGTGCAGGAGTGC
GTGTCCGAGTTCGTCAGCTTCATCACCTCCGAGGCCTCCGACAAGTGTCA
GAGGGAGAAGAGAAAGACCATTAACGGCGATGACATCCTGTGGGCGATGA
GCACGCTCGGTTTTGACAAGTATATCGAACCGCTCAAGCATTATCTCGCT
CGTTATCGAGAAACAGTCATGCAGGAAAAGGGTGAAGACACCAAGAATAC
CGACGCTAGTAAGCACACCTCTTCCTAA
back to top