Ggra9027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9027.t1
Unique NameGgra9027.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1284107..1285078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9027Ggra9027Gracilaria gracilis GNS1m malegenetig00000860_pilon 1284107..1285078 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9027.t1.start1Ggra9027.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1284107..1284109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9027.t1.CDS1Ggra9027.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1284107..1285078 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9027.t1.exon1Ggra9027.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1284107..1285078 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9027.t1.stop1Ggra9027.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1285076..1285078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9027.t1Ggra9027.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1284107..1285078 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9027.t1 ID=Ggra9027.t1|Name=Ggra9027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp
MAQVLLRGSARDSLLLHTTRVSVVFVTPVDSPFDLKCIELSDGYHNSTIN
TSLNTLLQPSFLELNPDAVGISHPSLQAVDKVILTNAFLHLHVQQRTFHS
LGLPAAIRAADYEPRLISIPRTSKQASSRVRSRLETLGSHIMRISTGNSA
LRLPPSVKGNVVMQQGEITLQTKQFCACSDSVLNAPSILSKKEEQDMLQL
VDHIQELVYNSPESVMAMKDSFDAPTLSQEMRVTIRNYNGYCTSRLVNDV
LQSARKTVSKLREGKQEIVWAAVLAVAPQSAPIAWRMSASGKPRTGDQKH
WKTAAEMFIITKDHCIGAQLKNA*
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spliced messenger RNA

>Ggra9027.t1 ID=Ggra9027.t1|Name=Ggra9027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000860_pilon:1284107..1285078+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAGGTGCTCCTCCGAGGCAGTGCACGAGACTCACTCCTTCTACA
CACTACCAGAGTGAGCGTTGTGTTCGTAACGCCAGTCGATTCTCCCTTCG
ATCTAAAGTGCATCGAGTTATCCGATGGATACCACAACTCTACCATAAAC
ACTTCACTTAACACACTGTTACAACCTTCGTTTCTAGAGCTGAACCCTGA
CGCCGTCGGAATATCTCATCCAAGCTTACAGGCCGTCGACAAGGTGATTC
TCACCAACGCCTTTTTACACTTGCATGTCCAGCAGCGAACTTTCCATTCT
CTAGGTCTTCCGGCTGCCATACGCGCAGCTGACTATGAACCCCGCCTTAT
TTCAATACCCCGTACTTCAAAGCAGGCAAGCTCCCGAGTTCGAAGCCGTT
TAGAAACTCTTGGTTCGCACATCATGCGGATCTCTACTGGCAATTCTGCG
CTACGACTTCCTCCTTCTGTCAAGGGCAACGTAGTTATGCAGCAAGGCGA
AATCACGCTACAAACCAAACAGTTTTGTGCGTGCAGCGACTCGGTATTGA
ACGCTCCTTCAATTCTATCGAAGAAGGAGGAGCAGGACATGTTGCAACTT
GTAGATCACATACAAGAACTTGTGTACAACTCACCCGAAAGTGTAATGGC
GATGAAAGACTCGTTCGATGCTCCCACACTCTCGCAAGAGATGAGAGTAA
CAATTAGAAATTACAACGGCTATTGTACGTCGCGGTTGGTGAATGACGTT
TTGCAATCGGCGCGCAAGACGGTTTCAAAACTACGTGAAGGCAAGCAGGA
GATTGTATGGGCTGCCGTGCTCGCCGTTGCCCCTCAATCCGCGCCGATAG
CATGGCGTATGTCAGCGTCAGGAAAACCGCGCACAGGTGACCAAAAGCAT
TGGAAAACAGCTGCCGAGATGTTCATCATCACAAAAGATCATTGCATTGG
AGCACAACTGAAGAACGCATGA
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protein sequence of Ggra9027.t1

>Ggra9027.t1 ID=Ggra9027.t1|Name=Ggra9027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=324bp
MAQVLLRGSARDSLLLHTTRVSVVFVTPVDSPFDLKCIELSDGYHNSTIN
TSLNTLLQPSFLELNPDAVGISHPSLQAVDKVILTNAFLHLHVQQRTFHS
LGLPAAIRAADYEPRLISIPRTSKQASSRVRSRLETLGSHIMRISTGNSA
LRLPPSVKGNVVMQQGEITLQTKQFCACSDSVLNAPSILSKKEEQDMLQL
VDHIQELVYNSPESVMAMKDSFDAPTLSQEMRVTIRNYNGYCTSRLVNDV
LQSARKTVSKLREGKQEIVWAAVLAVAPQSAPIAWRMSASGKPRTGDQKH
WKTAAEMFIITKDHCIGAQLKNA*
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mRNA from alignment at tig00000860_pilon:1284107..1285078+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9027.t1 ID=Ggra9027.t1|Name=Ggra9027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00000860_pilon:1284107..1285078+ (Gracilaria gracilis GNS1m male)
ATGGCACAGGTGCTCCTCCGAGGCAGTGCACGAGACTCACTCCTTCTACA
CACTACCAGAGTGAGCGTTGTGTTCGTAACGCCAGTCGATTCTCCCTTCG
ATCTAAAGTGCATCGAGTTATCCGATGGATACCACAACTCTACCATAAAC
ACTTCACTTAACACACTGTTACAACCTTCGTTTCTAGAGCTGAACCCTGA
CGCCGTCGGAATATCTCATCCAAGCTTACAGGCCGTCGACAAGGTGATTC
TCACCAACGCCTTTTTACACTTGCATGTCCAGCAGCGAACTTTCCATTCT
CTAGGTCTTCCGGCTGCCATACGCGCAGCTGACTATGAACCCCGCCTTAT
TTCAATACCCCGTACTTCAAAGCAGGCAAGCTCCCGAGTTCGAAGCCGTT
TAGAAACTCTTGGTTCGCACATCATGCGGATCTCTACTGGCAATTCTGCG
CTACGACTTCCTCCTTCTGTCAAGGGCAACGTAGTTATGCAGCAAGGCGA
AATCACGCTACAAACCAAACAGTTTTGTGCGTGCAGCGACTCGGTATTGA
ACGCTCCTTCAATTCTATCGAAGAAGGAGGAGCAGGACATGTTGCAACTT
GTAGATCACATACAAGAACTTGTGTACAACTCACCCGAAAGTGTAATGGC
GATGAAAGACTCGTTCGATGCTCCCACACTCTCGCAAGAGATGAGAGTAA
CAATTAGAAATTACAACGGCTATTGTACGTCGCGGTTGGTGAATGACGTT
TTGCAATCGGCGCGCAAGACGGTTTCAAAACTACGTGAAGGCAAGCAGGA
GATTGTATGGGCTGCCGTGCTCGCCGTTGCCCCTCAATCCGCGCCGATAG
CATGGCGTATGTCAGCGTCAGGAAAACCGCGCACAGGTGACCAAAAGCAT
TGGAAAACAGCTGCCGAGATGTTCATCATCACAAAAGATCATTGCATTGG
AGCACAACTGAAGAACGCATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1284107..1285078+

>Ggra9027.t1 ID=Ggra9027.t1|Name=Ggra9027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=972bp|location=Sequence derived from alignment at tig00000860_pilon:1284107..1285078+ (Gracilaria gracilis GNS1m male)
ATGGCACAGGTGCTCCTCCGAGGCAGTGCACGAGACTCACTCCTTCTACA
CACTACCAGAGTGAGCGTTGTGTTCGTAACGCCAGTCGATTCTCCCTTCG
ATCTAAAGTGCATCGAGTTATCCGATGGATACCACAACTCTACCATAAAC
ACTTCACTTAACACACTGTTACAACCTTCGTTTCTAGAGCTGAACCCTGA
CGCCGTCGGAATATCTCATCCAAGCTTACAGGCCGTCGACAAGGTGATTC
TCACCAACGCCTTTTTACACTTGCATGTCCAGCAGCGAACTTTCCATTCT
CTAGGTCTTCCGGCTGCCATACGCGCAGCTGACTATGAACCCCGCCTTAT
TTCAATACCCCGTACTTCAAAGCAGGCAAGCTCCCGAGTTCGAAGCCGTT
TAGAAACTCTTGGTTCGCACATCATGCGGATCTCTACTGGCAATTCTGCG
CTACGACTTCCTCCTTCTGTCAAGGGCAACGTAGTTATGCAGCAAGGCGA
AATCACGCTACAAACCAAACAGTTTTGTGCGTGCAGCGACTCGGTATTGA
ACGCTCCTTCAATTCTATCGAAGAAGGAGGAGCAGGACATGTTGCAACTT
GTAGATCACATACAAGAACTTGTGTACAACTCACCCGAAAGTGTAATGGC
GATGAAAGACTCGTTCGATGCTCCCACACTCTCGCAAGAGATGAGAGTAA
CAATTAGAAATTACAACGGCTATTGTACGTCGCGGTTGGTGAATGACGTT
TTGCAATCGGCGCGCAAGACGGTTTCAAAACTACGTGAAGGCAAGCAGGA
GATTGTATGGGCTGCCGTGCTCGCCGTTGCCCCTCAATCCGCGCCGATAG
CATGGCGTATGTCAGCGTCAGGAAAACCGCGCACAGGTGACCAAAAGCAT
TGGAAAACAGCTGCCGAGATGTTCATCATCACAAAAGATCATTGCATTGG
AGCACAACTGAAGAACGCATGA
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