Ggra9023.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9023.t1
Unique NameGgra9023.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1269981..1271291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9023Ggra9023Gracilaria gracilis GNS1m malegenetig00000860_pilon 1269981..1271291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1Ggra9023.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1269981..1271291 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1.start1Ggra9023.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1269981..1269983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1.CDS1Ggra9023.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1269981..1270328 +
Ggra9023.t1.CDS2Ggra9023.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1270731..1271291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1.exon1Ggra9023.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1269981..1270328 +
Ggra9023.t1.exon2Ggra9023.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1270731..1271291 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1.intron1Ggra9023.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1270329..1270730 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9023.t1.stop1Ggra9023.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1271289..1271291 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MLSQELQTPAQITVWSEGAFNTGRHKLHIAANDDGDIVADAHRRLPDHMI
VATDSASITPVALPLEHGYASFQTEQTEQVENAGANAMHADFDHHVADEE
QENTATRNHRQVQQHQSHEQHTAPEQSLQQQQVAQTEVTAESVGVSRDTP
RKRSGSNRRKRYRCGYCHELGHNQKTCPIRPPHLPTRSQAHRTSIQDTAQ
LQLVAAKVAEELSRMFFEMTNAHSGDEWQPPQQISYDTVLEAANKEVMQA
NQSVADATTDQEFDNAIDNLQSAVCMLEKVAVLIYKSAALAHTMSRSVED
PF*
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spliced messenger RNA

>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000860_pilon:1269981..1271291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCGCAAGAGCTGCAGACGCCAGCGCAGATAACGGTGTGGTCAGA
AGGCGCGTTTAACACTGGGCGCCACAAACTGCATATCGCGGCAAATGACG
ACGGCGATATTGTCGCCGACGCTCACCGACGTCTTCCGGATCACATGATC
GTTGCTACCGATTCCGCTTCCATAACCCCTGTCGCGCTGCCATTAGAGCA
CGGCTATGCGTCGTTCCAGACTGAGCAGACCGAGCAAGTCGAAAACGCTG
GCGCGAACGCCATGCATGCAGACTTTGACCATCATGTCGCAGACGAAGAA
CAGGAGAACACGGCAACGCGCAACCACAGACAGGTTCAGCAGCATCAATC
GCACGAACAACATACCGCACCAGAGCAATCTTTGCAACAGCAACAGGTCG
CACAGACAGAAGTCACGGCCGAGAGCGTTGGCGTCTCACGAGATACGCCA
CGGAAAAGGTCAGGGTCGAACCGGAGGAAGCGTTATCGCTGCGGATACTG
TCATGAACTAGGTCACAATCAGAAGACCTGCCCGATCAGACCTCCGCATC
TACCAACAAGATCTCAGGCACACAGAACATCCATACAAGATACCGCTCAG
TTACAACTCGTCGCTGCTAAGGTTGCTGAGGAATTGAGCAGAATGTTCTT
CGAAATGACCAATGCACACTCTGGTGATGAGTGGCAGCCACCACAACAAA
TTTCATACGACACTGTCCTTGAAGCAGCGAACAAGGAAGTAATGCAGGCT
AATCAGTCTGTCGCGGATGCAACGACGGATCAAGAATTTGACAACGCTAT
TGATAATCTTCAATCCGCTGTCTGTATGTTGGAAAAAGTGGCTGTCCTTA
TATACAAGAGCGCTGCATTAGCTCATACGATGAGTCGCAGCGTTGAAGAT
CCTTTTTAG
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protein sequence of Ggra9023.t1

>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MLSQELQTPAQITVWSEGAFNTGRHKLHIAANDDGDIVADAHRRLPDHMI
VATDSASITPVALPLEHGYASFQTEQTEQVENAGANAMHADFDHHVADEE
QENTATRNHRQVQQHQSHEQHTAPEQSLQQQQVAQTEVTAESVGVSRDTP
RKRSGSNRRKRYRCGYCHELGHNQKTCPIRPPHLPTRSQAHRTSIQDTAQ
LQLVAAKVAEELSRMFFEMTNAHSGDEWQPPQQISYDTVLEAANKEVMQA
NQSVADATTDQEFDNAIDNLQSAVCMLEKVAVLIYKSAALAHTMSRSVED
PF*
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mRNA from alignment at tig00000860_pilon:1269981..1271291+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000860_pilon:1269981..1271291+ (Gracilaria gracilis GNS1m male)
ATGCTCTCGCAAGAGCTGCAGACGCCAGCGCAGATAACGGTGTGGTCAGA
AGGCGCGTTTAACACTGGGCGCCACAAACTGCATATCGCGGCAAATGACG
ACGGCGATATTGTCGCCGACGCTCACCGACGTCTTCCGGATCACATGATC
GTTGCTACCGATTCCGCTTCCATAACCCCTGTCGCGCTGCCATTAGAGCA
CGGCTATGCGTCGTTCCAGACTGAGCAGACCGAGCAAGTCGAAAACGCTG
GCGCGAACGCCATGCATGCAGACTTTGACCATCATGTCGCAGACGAAGAA
CAGGAGAACACGGCAACGCGCAACCACAGACAGGTTCAGCAGCATCAAGT
ACTGcaacatcgacaacagcttgcacaggataaccaagaagaggagcagc
gagaacgacaaacccagcagcgacagcagcaacagcagcagcagcaacag
cagcaacaacagcagctgcagcagctgcagcagcagcagcagcagcagca
acagcaacagcaacagcaacagcaacagcaacagcagcaggagcagcagg
agcagcagcaggagcagcaggagcagcaggagcaggagcaggagcaggag
cagcagcgggagcaggagaagcatcagcatcagcggcaacagcaggagca
gcagcaacaacacccccaacaacacgatcacaaacacgagcaactacaag
aaggtcaacaacagcagcaggagcatGAACAACATATCCATCATGCGCAG
TCGCACGAACAACATACCGCACCAGAGCAATCTTTGCAACAGCAACAGGT
CGCACAGACAGAAGTCACGGCCGAGAGCGTTGGCGTCTCACGAGATACGC
CACGGAAAAGGTCAGGGTCGAACCGGAGGAAGCGTTATCGCTGCGGATAC
TGTCATGAACTAGGTCACAATCAGAAGACCTGCCCGATCAGACCTCCGCA
TCTACCAACAAGATCTCAGGCACACAGAACATCCATACAAGATACCGCTC
AGTTACAACTCGTCGCTGCTAAGGTTGCTGAGGAATTGAGCAGAATGTTC
TTCGAAATGACCAATGCACACTCTGGTGATGAGTGGCAGCCACCACAACA
AATTTCATACGACACTGTCCTTGAAGCAGCGAACAAGGAAGTAATGCAGG
CTAATCAGTCTGTCGCGGATGCAACGACGGATCAAGAATTTGACAACGCT
ATTGATAATCTTCAATCCGCTGTCTGTATGTTGGAAAAAGTGGCTGTCCT
TATATACAAGAGCGCTGCATTAGCTCATACGATGAGTCGCAGCGTTGAAG
ATCCTTTTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1269981..1271291+

>Ggra9023.t1 ID=Ggra9023.t1|Name=Ggra9023.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000860_pilon:1269981..1271291+ (Gracilaria gracilis GNS1m male)
ATGCTCTCGCAAGAGCTGCAGACGCCAGCGCAGATAACGGTGTGGTCAGA
AGGCGCGTTTAACACTGGGCGCCACAAACTGCATATCGCGGCAAATGACG
ACGGCGATATTGTCGCCGACGCTCACCGACGTCTTCCGGATCACATGATC
GTTGCTACCGATTCCGCTTCCATAACCCCTGTCGCGCTGCCATTAGAGCA
CGGCTATGCGTCGTTCCAGACTGAGCAGACCGAGCAAGTCGAAAACGCTG
GCGCGAACGCCATGCATGCAGACTTTGACCATCATGTCGCAGACGAAGAA
CAGGAGAACACGGCAACGCGCAACCACAGACAGGTTCAGCAGCATCAATC
GCACGAACAACATACCGCACCAGAGCAATCTTTGCAACAGCAACAGGTCG
CACAGACAGAAGTCACGGCCGAGAGCGTTGGCGTCTCACGAGATACGCCA
CGGAAAAGGTCAGGGTCGAACCGGAGGAAGCGTTATCGCTGCGGATACTG
TCATGAACTAGGTCACAATCAGAAGACCTGCCCGATCAGACCTCCGCATC
TACCAACAAGATCTCAGGCACACAGAACATCCATACAAGATACCGCTCAG
TTACAACTCGTCGCTGCTAAGGTTGCTGAGGAATTGAGCAGAATGTTCTT
CGAAATGACCAATGCACACTCTGGTGATGAGTGGCAGCCACCACAACAAA
TTTCATACGACACTGTCCTTGAAGCAGCGAACAAGGAAGTAATGCAGGCT
AATCAGTCTGTCGCGGATGCAACGACGGATCAAGAATTTGACAACGCTAT
TGATAATCTTCAATCCGCTGTCTGTATGTTGGAAAAAGTGGCTGTCCTTA
TATACAAGAGCGCTGCATTAGCTCATACGATGAGTCGCAGCGTTGAAGAT
CCTTTTTAG
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