Ggra9020.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9020.t1
Unique NameGgra9020.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1169969..1171123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_1735
PFAMsDUF2235
Max annot lvl1117|Cyanobacteria
Evalue3.19e-84
EggNOG OGsCOG3673@1|root,COG3673@2|Bacteria,1G1VC@1117|Cyanobacteria,1H9I8@1150|Oscillatoriales
Description'Conserved protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9020Ggra9020Gracilaria gracilis GNS1m malegenetig00000860_pilon 1169969..1171123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1Ggra9020.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1169969..1171123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1.stop1Ggra9020.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1169969..1169971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1.CDS1Ggra9020.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1169969..1170974 -
Ggra9020.t1.CDS2Ggra9020.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1171059..1171123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1.exon1Ggra9020.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1169969..1170974 -
Ggra9020.t1.exon2Ggra9020.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 1171059..1171123 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1.intron1Ggra9020.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 1170975..1171058 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9020.t1.start1Ggra9020.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1171121..1171123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9020.t1 ID=Ggra9020.t1|Name=Ggra9020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MAVEPSTPSKRLCVFADGTWNSPELKILTNIATLARSLAYKCSEGIPQVC
FYDPGVGTDGGAVNRVRGGAFGVGIDQNIQQLYTFLAMNYDEGDEIYMFG
FSRGAYTVRSLAGMMNESGLLYREHLDYVREAYDLYRDNEDLDSPTAVNF
RNKYSRRVPVKLLLCFDTVGALGLPDSLPFPLSVLGDDYRYQFHNTELSD
PIENAIHVVSIDEDRKSFSPTLMKPNSRRGPKQLTEVFMPGSHSGVGGGT
EEELNLTRNALLFALEEMKKRNLGIEFSGDLLPKQYSYDIPPLPQQGYFG
YYNMFRLLTGGEKCRDIASVDQLHETAIRRFKTFGNWRPKGLIPLKNALT
KLADSL*
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spliced messenger RNA

>Ggra9020.t1 ID=Ggra9020.t1|Name=Ggra9020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000860_pilon:1169969..1171123- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCGAACCAAGCACTCCGTCAAAGCGGCTCTGCGTCTTTGCCGA
CGGCACATGGAACTCTCCAGAGCTTAAGATTCTGACAAACATAGCGACCC
TAGCACGATCATTGGCATACAAATGTTCAGAAGGCATCCCACAAGTATGT
TTTTATGATCCAGGAGTTGGAACCGATGGTGGTGCCGTGAATCGTGTTCG
CGGTGGTGCATTCGGCGTGGGCATCGATCAAAACATACAGCAGTTGTACA
CCTTTTTGGCCATGAACTATGATGAAGGTGATGAAATCTACATGTTTGGA
TTTTCACGTGGCGCTTATACTGTTCGTTCGCTTGCTGGTATGATGAACGA
ATCAGGTCTTCTTTACCGCGAGCACCTTGACTACGTTCGGGAAGCATACG
ATTTGTATCGCGACAATGAAGACCTTGACTCACCTACTGCCGTAAACTTC
AGGAACAAGTATTCGAGAAGAGTTCCAGTCAAACTACTTCTCTGCTTTGA
TACCGTCGGGGCTTTAGGACTTCCTGATAGTTTACCTTTCCCCTTATCAG
TGCTTGGGGATGATTATCGATACCAATTTCATAATACCGAACTCAGTGAC
CCTATAGAAAACGCCATTCATGTGGTGAGTATCGACGAAGACAGAAAGTC
TTTTTCTCCTACGTTAATGAAGCCGAACTCTCGTAGGGGTCCGAAACAGC
TGACTGAGGTGTTCATGCCGGGATCTCATAGCGGAGTCGGCGGTGGAACC
GAAGAAGAACTCAACCTAACAAGGAATGCCCTGCTATTTGCTTTGGAAGA
GATGAAGAAAAGGAATCTTGGGATTGAGTTTAGTGGGGACTTGCTTCCGA
AACAATATTCTTATGACATCCCACCTTTGCCTCAACAAGGTTATTTTGGA
TACTACAATATGTTCAGGTTGCTCACTGGCGGCGAGAAGTGTCGAGACAT
TGCCAGCGTGGATCAACTACATGAGACGGCTATTCGCAGGTTTAAAACGT
TTGGAAATTGGAGACCAAAGGGACTGATTCCTCTCAAGAACGCATTGACG
AAGCTTGCTGATAGCTTGTAG
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protein sequence of Ggra9020.t1

>Ggra9020.t1 ID=Ggra9020.t1|Name=Ggra9020.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MAVEPSTPSKRLCVFADGTWNSPELKILTNIATLARSLAYKCSEGIPQVC
FYDPGVGTDGGAVNRVRGGAFGVGIDQNIQQLYTFLAMNYDEGDEIYMFG
FSRGAYTVRSLAGMMNESGLLYREHLDYVREAYDLYRDNEDLDSPTAVNF
RNKYSRRVPVKLLLCFDTVGALGLPDSLPFPLSVLGDDYRYQFHNTELSD
PIENAIHVVSIDEDRKSFSPTLMKPNSRRGPKQLTEVFMPGSHSGVGGGT
EEELNLTRNALLFALEEMKKRNLGIEFSGDLLPKQYSYDIPPLPQQGYFG
YYNMFRLLTGGEKCRDIASVDQLHETAIRRFKTFGNWRPKGLIPLKNALT
KLADSL*
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mRNA from alignment at tig00000860_pilon:1169969..1171123-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9020.t1 ID=Ggra9020.t1|Name=Ggra9020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000860_pilon:1169969..1171123- (Gracilaria gracilis GNS1m male)
ATGGCCGTCGAACCAAGCACTCCGTCAAAGCGGCTCTGCGTCTTTGCCGA
CGGCACATGGAACTCGTAAGTTTATGCGATATTTCCCCTCGTCCCATGGA
TAAGCTAGTTTTGATTCACGTAAAGCATTCATTTCTAACTTTCTCGTAGT
CCAGAGCTTAAGATTCTGACAAACATAGCGACCCTAGCACGATCATTGGC
ATACAAATGTTCAGAAGGCATCCCACAAGTATGTTTTTATGATCCAGGAG
TTGGAACCGATGGTGGTGCCGTGAATCGTGTTCGCGGTGGTGCATTCGGC
GTGGGCATCGATCAAAACATACAGCAGTTGTACACCTTTTTGGCCATGAA
CTATGATGAAGGTGATGAAATCTACATGTTTGGATTTTCACGTGGCGCTT
ATACTGTTCGTTCGCTTGCTGGTATGATGAACGAATCAGGTCTTCTTTAC
CGCGAGCACCTTGACTACGTTCGGGAAGCATACGATTTGTATCGCGACAA
TGAAGACCTTGACTCACCTACTGCCGTAAACTTCAGGAACAAGTATTCGA
GAAGAGTTCCAGTCAAACTACTTCTCTGCTTTGATACCGTCGGGGCTTTA
GGACTTCCTGATAGTTTACCTTTCCCCTTATCAGTGCTTGGGGATGATTA
TCGATACCAATTTCATAATACCGAACTCAGTGACCCTATAGAAAACGCCA
TTCATGTGGTGAGTATCGACGAAGACAGAAAGTCTTTTTCTCCTACGTTA
ATGAAGCCGAACTCTCGTAGGGGTCCGAAACAGCTGACTGAGGTGTTCAT
GCCGGGATCTCATAGCGGAGTCGGCGGTGGAACCGAAGAAGAACTCAACC
TAACAAGGAATGCCCTGCTATTTGCTTTGGAAGAGATGAAGAAAAGGAAT
CTTGGGATTGAGTTTAGTGGGGACTTGCTTCCGAAACAATATTCTTATGA
CATCCCACCTTTGCCTCAACAAGGTTATTTTGGATACTACAATATGTTCA
GGTTGCTCACTGGCGGCGAGAAGTGTCGAGACATTGCCAGCGTGGATCAA
CTACATGAGACGGCTATTCGCAGGTTTAAAACGTTTGGAAATTGGAGACC
AAAGGGACTGATTCCTCTCAAGAACGCATTGACGAAGCTTGCTGATAGCT
TGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1169969..1171123-

>Ggra9020.t1 ID=Ggra9020.t1|Name=Ggra9020.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000860_pilon:1169969..1171123- (Gracilaria gracilis GNS1m male)
ATGGCCGTCGAACCAAGCACTCCGTCAAAGCGGCTCTGCGTCTTTGCCGA
CGGCACATGGAACTCTCCAGAGCTTAAGATTCTGACAAACATAGCGACCC
TAGCACGATCATTGGCATACAAATGTTCAGAAGGCATCCCACAAGTATGT
TTTTATGATCCAGGAGTTGGAACCGATGGTGGTGCCGTGAATCGTGTTCG
CGGTGGTGCATTCGGCGTGGGCATCGATCAAAACATACAGCAGTTGTACA
CCTTTTTGGCCATGAACTATGATGAAGGTGATGAAATCTACATGTTTGGA
TTTTCACGTGGCGCTTATACTGTTCGTTCGCTTGCTGGTATGATGAACGA
ATCAGGTCTTCTTTACCGCGAGCACCTTGACTACGTTCGGGAAGCATACG
ATTTGTATCGCGACAATGAAGACCTTGACTCACCTACTGCCGTAAACTTC
AGGAACAAGTATTCGAGAAGAGTTCCAGTCAAACTACTTCTCTGCTTTGA
TACCGTCGGGGCTTTAGGACTTCCTGATAGTTTACCTTTCCCCTTATCAG
TGCTTGGGGATGATTATCGATACCAATTTCATAATACCGAACTCAGTGAC
CCTATAGAAAACGCCATTCATGTGGTGAGTATCGACGAAGACAGAAAGTC
TTTTTCTCCTACGTTAATGAAGCCGAACTCTCGTAGGGGTCCGAAACAGC
TGACTGAGGTGTTCATGCCGGGATCTCATAGCGGAGTCGGCGGTGGAACC
GAAGAAGAACTCAACCTAACAAGGAATGCCCTGCTATTTGCTTTGGAAGA
GATGAAGAAAAGGAATCTTGGGATTGAGTTTAGTGGGGACTTGCTTCCGA
AACAATATTCTTATGACATCCCACCTTTGCCTCAACAAGGTTATTTTGGA
TACTACAATATGTTCAGGTTGCTCACTGGCGGCGAGAAGTGTCGAGACAT
TGCCAGCGTGGATCAACTACATGAGACGGCTATTCGCAGGTTTAAAACGT
TTGGAAATTGGAGACCAAAGGGACTGATTCCTCTCAAGAACGCATTGACG
AAGCTTGCTGATAGCTTGTAG
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