Ggra9017.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9017.t1
Unique NameGgra9017.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1162458..1163546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo127719
PFAMsAsp_protease_2,RVT_1,gag-asp_proteas
Max annot lvl4776|Peronosporales
Evalue0.000136
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH3I@4776|Peronosporales
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9017Ggra9017Gracilaria gracilis GNS1m malegenetig00000860_pilon 1162458..1163546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9017.t1.stop1Ggra9017.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1162458..1162460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9017.t1.CDS1Ggra9017.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1162458..1163546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9017.t1.exon1Ggra9017.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1162458..1163546 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9017.t1.start1Ggra9017.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1163544..1163546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9017.t1Ggra9017.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1162458..1163546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9017.t1 ID=Ggra9017.t1|Name=Ggra9017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=363bp
MAHTTFCEVQAPRLGKIDTASIRSFLRQRNEYEQLVREKNDGSEANVPLV
SLKTSISEVVLHTLCKAQFVSATSSEQITDEMLKETLVERTVVNFISLKN
DEIERMVRGVKMDMSIQDCKTRVWQLVIDYENALSAEGYQGVLEKCPQTA
IKHIRERTRPLVLREKMVSVLQIEKKQGRHYNHFYDFVRRLVQEAEIVEM
EGYEEEELIEHVKEDPHLWPAEVVANNDKSEEGATVVTPCKVQLKGPSKV
KTPFCWNKEKCFGQRHRLKQCPNTSAKEKKKIYNRAMRRKYGRNAKKVKA
KIDNVRIVNIDKHSIMFKVSFADVVAEAVQGSNHLVKMLGGKQFDLRNTI
EALRMRSEITEG*
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spliced messenger RNA

>Ggra9017.t1 ID=Ggra9017.t1|Name=Ggra9017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000860_pilon:1162458..1163546- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCATACAACGTTTTGTGAGGTGCAAGCTCCTCGTCTCGGCAAGAT
TGACACCGCGTCAATCCGAAGTTTTCTCCGACAACGAAACGAATACGAAC
AACTCGTGCGTGAGAAGAACGACGGTTCTGAGGCAAATGTACCACTCGTT
TCTCTCAAGACCAGTATCTCCGAGGTTGTCCTTCACACTCTTTGCAAAGC
GCAATTCGTTTCCGCCACAAGCAGCGAACAAATCACGGATGAAATGTTGA
AAGAGACGCTGGTGGAACGAACGGTGGTCAACTTCATAAGCCTTAAAAAC
GACGAAATCGAACGCATGGTGCGAGGCGTGAAGATGGATATGAGTATCCA
GGATTGCAAAACGCGCGTATGGCAGCTTGTCATCGATTACGAGAACGCGC
TCTCTGCAGAGGGGTATCAAGGCGTGCTTGAGAAGTGTCCTCAAACGGCC
ATCAAGCACATTCGAGAGCGTACAAGACCACTTGTGTTACGAGAGAAAAT
GGTGAGTGTGTTACAAATTGAGAAGAAACAGGGGCGTCATTATAATCACT
TCTACGACTTTGTCCGCAGATTGGTGCAGGAAGCAGAGATTGTGGAGATG
GAAGGATATGAAGAAGAAGAACTCATCGAACACGTGAAAGAGGACCCTCA
TCTTTGGCCAGCGGAAGTAGTTGCCAACAATGACAAATCCGAAGAAGGAG
CGACTGTGGTCACGCCATGCAAAGTACAACTGAAAGGGCCGAGCAAAGTT
AAGACTCCGTTTTGCTGGAACAAAGAAAAGTGTTTCGGACAGAGACATCG
ACTGAAACAATGTCCCAACACAAGCGCGAAAGAGAAGAAGAAAATTTACA
ATCGCGCAATGCGTCGTAAGTACGGGCGAAACGCGAAGAAAGTGAAGGCG
AAGATTGACAACGTGCGTATCGTCAACATCGACAAACACTCAATCATGTT
TAAGGTGTCATTCGCTGATGTGGTGGCTGAGGCAGTACAAGGCTCGAACC
ATCTGGTAAAGATGCTAGGGGGTAAACAGTTTGACCTTCGTAACACAATT
GAGGCGTTACGGATGCGCTCCGAGATAACTGAAGGATGA
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protein sequence of Ggra9017.t1

>Ggra9017.t1 ID=Ggra9017.t1|Name=Ggra9017.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=363bp
MAHTTFCEVQAPRLGKIDTASIRSFLRQRNEYEQLVREKNDGSEANVPLV
SLKTSISEVVLHTLCKAQFVSATSSEQITDEMLKETLVERTVVNFISLKN
DEIERMVRGVKMDMSIQDCKTRVWQLVIDYENALSAEGYQGVLEKCPQTA
IKHIRERTRPLVLREKMVSVLQIEKKQGRHYNHFYDFVRRLVQEAEIVEM
EGYEEEELIEHVKEDPHLWPAEVVANNDKSEEGATVVTPCKVQLKGPSKV
KTPFCWNKEKCFGQRHRLKQCPNTSAKEKKKIYNRAMRRKYGRNAKKVKA
KIDNVRIVNIDKHSIMFKVSFADVVAEAVQGSNHLVKMLGGKQFDLRNTI
EALRMRSEITEG*
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mRNA from alignment at tig00000860_pilon:1162458..1163546-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9017.t1 ID=Ggra9017.t1|Name=Ggra9017.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000860_pilon:1162458..1163546- (Gracilaria gracilis GNS1m male)
ATGGCCCATACAACGTTTTGTGAGGTGCAAGCTCCTCGTCTCGGCAAGAT
TGACACCGCGTCAATCCGAAGTTTTCTCCGACAACGAAACGAATACGAAC
AACTCGTGCGTGAGAAGAACGACGGTTCTGAGGCAAATGTACCACTCGTT
TCTCTCAAGACCAGTATCTCCGAGGTTGTCCTTCACACTCTTTGCAAAGC
GCAATTCGTTTCCGCCACAAGCAGCGAACAAATCACGGATGAAATGTTGA
AAGAGACGCTGGTGGAACGAACGGTGGTCAACTTCATAAGCCTTAAAAAC
GACGAAATCGAACGCATGGTGCGAGGCGTGAAGATGGATATGAGTATCCA
GGATTGCAAAACGCGCGTATGGCAGCTTGTCATCGATTACGAGAACGCGC
TCTCTGCAGAGGGGTATCAAGGCGTGCTTGAGAAGTGTCCTCAAACGGCC
ATCAAGCACATTCGAGAGCGTACAAGACCACTTGTGTTACGAGAGAAAAT
GGTGAGTGTGTTACAAATTGAGAAGAAACAGGGGCGTCATTATAATCACT
TCTACGACTTTGTCCGCAGATTGGTGCAGGAAGCAGAGATTGTGGAGATG
GAAGGATATGAAGAAGAAGAACTCATCGAACACGTGAAAGAGGACCCTCA
TCTTTGGCCAGCGGAAGTAGTTGCCAACAATGACAAATCCGAAGAAGGAG
CGACTGTGGTCACGCCATGCAAAGTACAACTGAAAGGGCCGAGCAAAGTT
AAGACTCCGTTTTGCTGGAACAAAGAAAAGTGTTTCGGACAGAGACATCG
ACTGAAACAATGTCCCAACACAAGCGCGAAAGAGAAGAAGAAAATTTACA
ATCGCGCAATGCGTCGTAAGTACGGGCGAAACGCGAAGAAAGTGAAGGCG
AAGATTGACAACGTGCGTATCGTCAACATCGACAAACACTCAATCATGTT
TAAGGTGTCATTCGCTGATGTGGTGGCTGAGGCAGTACAAGGCTCGAACC
ATCTGGTAAAGATGCTAGGGGGTAAACAGTTTGACCTTCGTAACACAATT
GAGGCGTTACGGATGCGCTCCGAGATAACTGAAGGATGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1162458..1163546-

>Ggra9017.t1 ID=Ggra9017.t1|Name=Ggra9017.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00000860_pilon:1162458..1163546- (Gracilaria gracilis GNS1m male)
ATGGCCCATACAACGTTTTGTGAGGTGCAAGCTCCTCGTCTCGGCAAGAT
TGACACCGCGTCAATCCGAAGTTTTCTCCGACAACGAAACGAATACGAAC
AACTCGTGCGTGAGAAGAACGACGGTTCTGAGGCAAATGTACCACTCGTT
TCTCTCAAGACCAGTATCTCCGAGGTTGTCCTTCACACTCTTTGCAAAGC
GCAATTCGTTTCCGCCACAAGCAGCGAACAAATCACGGATGAAATGTTGA
AAGAGACGCTGGTGGAACGAACGGTGGTCAACTTCATAAGCCTTAAAAAC
GACGAAATCGAACGCATGGTGCGAGGCGTGAAGATGGATATGAGTATCCA
GGATTGCAAAACGCGCGTATGGCAGCTTGTCATCGATTACGAGAACGCGC
TCTCTGCAGAGGGGTATCAAGGCGTGCTTGAGAAGTGTCCTCAAACGGCC
ATCAAGCACATTCGAGAGCGTACAAGACCACTTGTGTTACGAGAGAAAAT
GGTGAGTGTGTTACAAATTGAGAAGAAACAGGGGCGTCATTATAATCACT
TCTACGACTTTGTCCGCAGATTGGTGCAGGAAGCAGAGATTGTGGAGATG
GAAGGATATGAAGAAGAAGAACTCATCGAACACGTGAAAGAGGACCCTCA
TCTTTGGCCAGCGGAAGTAGTTGCCAACAATGACAAATCCGAAGAAGGAG
CGACTGTGGTCACGCCATGCAAAGTACAACTGAAAGGGCCGAGCAAAGTT
AAGACTCCGTTTTGCTGGAACAAAGAAAAGTGTTTCGGACAGAGACATCG
ACTGAAACAATGTCCCAACACAAGCGCGAAAGAGAAGAAGAAAATTTACA
ATCGCGCAATGCGTCGTAAGTACGGGCGAAACGCGAAGAAAGTGAAGGCG
AAGATTGACAACGTGCGTATCGTCAACATCGACAAACACTCAATCATGTT
TAAGGTGTCATTCGCTGATGTGGTGGCTGAGGCAGTACAAGGCTCGAACC
ATCTGGTAAAGATGCTAGGGGGTAAACAGTTTGACCTTCGTAACACAATT
GAGGCGTTACGGATGCGCTCCGAGATAACTGAAGGATGA
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