Ggra9016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9016.t1
Unique NameGgra9016.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1161677..1162354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926559.JoomaDRAFT_1912
PFAMsNAD_binding_10
Max annot lvl976|Bacteroidetes
Evalue1.05e-12
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,4NMI5@976|Bacteroidetes,1IJ1D@117743|Flavobacteriia
DescriptionNmrA-like family
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9016Ggra9016Gracilaria gracilis GNS1m malegenetig00000860_pilon 1161677..1162354 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9016.t1.start1Ggra9016.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1161677..1161679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9016.t1.CDS1Ggra9016.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1161677..1162354 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9016.t1.exon1Ggra9016.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1161677..1162354 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9016.t1.stop1Ggra9016.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1162352..1162354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9016.t1Ggra9016.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1161677..1162354 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9016.t1 ID=Ggra9016.t1|Name=Ggra9016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MVKSILVIGANGRIGQELLRSISSRTEDRPALHAFVRRPQSLPSSLVTVC
DSVQQGDALRTDDVYNALLATEATHVVVAIGVPNSTKKTNLRTDSAKTLV
EAIQRCGREIRVVVVSSIGASGTRIRLGFGVGSMLSFYLRNVLSDHTGQE
ECFDNFFKGRKDCLLIVRPTELVDGRGGKKLVLFDGADKTPSGKIDRSDV
ARWIAARICDEGKRFGQTVNITASA*
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spliced messenger RNA

>Ggra9016.t1 ID=Ggra9016.t1|Name=Ggra9016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:1161677..1162354+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGTCAATCCTCGTCATCGGCGCCAACGGCCGGATCGGACAAGA
GCTGCTCCGCTCCATCTCCTCGCGCACGGAAGACCGCCCTGCGCTCCACG
CGTTCGTGCGTCGCCCACAGTCGCTTCCGTCATCACTGGTCACTGTTTGT
GACTCCGTGCAGCAGGGCGATGCACTTCGTACTGACGATGTGTACAACGC
GTTACTCGCCACTGAAGCCACTCATGTGGTGGTTGCAATCGGCGTGCCCA
ACAGCACCAAGAAGACCAATTTGAGAACCGACTCGGCCAAGACGCTCGTC
GAGGCCATTCAGCGATGCGGCAGGGAGATTAGAGTTGTGGTTGTTTCTAG
TATTGGCGCGAGTGGCACTCGTATCCGGCTTGGATTTGGTGTTGGCTCCA
TGCTTTCGTTTTATCTGCGAAATGTGTTGAGCGATCATACAGGACAGGAG
GAGTGTTTTGACAACTTCTTCAAGGGGAGGAAGGATTGTTTGTTGATCGT
TCGACCTACTGAACTGGTTGACGGACGAGGTGGAAAGAAGCTTGTGCTAT
TCGATGGCGCTGATAAGACCCCGAGCGGTAAGATTGATAGAAGTGATGTT
GCGCGCTGGATTGCCGCACGGATTTGCGATGAGGGCAAACGTTTTGGACA
GACGGTGAACATTACCGCGTCGGCTTGA
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protein sequence of Ggra9016.t1

>Ggra9016.t1 ID=Ggra9016.t1|Name=Ggra9016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MVKSILVIGANGRIGQELLRSISSRTEDRPALHAFVRRPQSLPSSLVTVC
DSVQQGDALRTDDVYNALLATEATHVVVAIGVPNSTKKTNLRTDSAKTLV
EAIQRCGREIRVVVVSSIGASGTRIRLGFGVGSMLSFYLRNVLSDHTGQE
ECFDNFFKGRKDCLLIVRPTELVDGRGGKKLVLFDGADKTPSGKIDRSDV
ARWIAARICDEGKRFGQTVNITASA*
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mRNA from alignment at tig00000860_pilon:1161677..1162354+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9016.t1 ID=Ggra9016.t1|Name=Ggra9016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:1161677..1162354+ (Gracilaria gracilis GNS1m male)
ATGGTGAAGTCAATCCTCGTCATCGGCGCCAACGGCCGGATCGGACAAGA
GCTGCTCCGCTCCATCTCCTCGCGCACGGAAGACCGCCCTGCGCTCCACG
CGTTCGTGCGTCGCCCACAGTCGCTTCCGTCATCACTGGTCACTGTTTGT
GACTCCGTGCAGCAGGGCGATGCACTTCGTACTGACGATGTGTACAACGC
GTTACTCGCCACTGAAGCCACTCATGTGGTGGTTGCAATCGGCGTGCCCA
ACAGCACCAAGAAGACCAATTTGAGAACCGACTCGGCCAAGACGCTCGTC
GAGGCCATTCAGCGATGCGGCAGGGAGATTAGAGTTGTGGTTGTTTCTAG
TATTGGCGCGAGTGGCACTCGTATCCGGCTTGGATTTGGTGTTGGCTCCA
TGCTTTCGTTTTATCTGCGAAATGTGTTGAGCGATCATACAGGACAGGAG
GAGTGTTTTGACAACTTCTTCAAGGGGAGGAAGGATTGTTTGTTGATCGT
TCGACCTACTGAACTGGTTGACGGACGAGGTGGAAAGAAGCTTGTGCTAT
TCGATGGCGCTGATAAGACCCCGAGCGGTAAGATTGATAGAAGTGATGTT
GCGCGCTGGATTGCCGCACGGATTTGCGATGAGGGCAAACGTTTTGGACA
GACGGTGAACATTACCGCGTCGGCTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1161677..1162354+

>Ggra9016.t1 ID=Ggra9016.t1|Name=Ggra9016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000860_pilon:1161677..1162354+ (Gracilaria gracilis GNS1m male)
ATGGTGAAGTCAATCCTCGTCATCGGCGCCAACGGCCGGATCGGACAAGA
GCTGCTCCGCTCCATCTCCTCGCGCACGGAAGACCGCCCTGCGCTCCACG
CGTTCGTGCGTCGCCCACAGTCGCTTCCGTCATCACTGGTCACTGTTTGT
GACTCCGTGCAGCAGGGCGATGCACTTCGTACTGACGATGTGTACAACGC
GTTACTCGCCACTGAAGCCACTCATGTGGTGGTTGCAATCGGCGTGCCCA
ACAGCACCAAGAAGACCAATTTGAGAACCGACTCGGCCAAGACGCTCGTC
GAGGCCATTCAGCGATGCGGCAGGGAGATTAGAGTTGTGGTTGTTTCTAG
TATTGGCGCGAGTGGCACTCGTATCCGGCTTGGATTTGGTGTTGGCTCCA
TGCTTTCGTTTTATCTGCGAAATGTGTTGAGCGATCATACAGGACAGGAG
GAGTGTTTTGACAACTTCTTCAAGGGGAGGAAGGATTGTTTGTTGATCGT
TCGACCTACTGAACTGGTTGACGGACGAGGTGGAAAGAAGCTTGTGCTAT
TCGATGGCGCTGATAAGACCCCGAGCGGTAAGATTGATAGAAGTGATGTT
GCGCGCTGGATTGCCGCACGGATTTGCGATGAGGGCAAACGTTTTGGACA
GACGGTGAACATTACCGCGTCGGCTTGA
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