Ggra9012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9012.t1
Unique NameGgra9012.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1148439..1149053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9012Ggra9012Gracilaria gracilis GNS1m malegenetig00000860_pilon 1148439..1149053 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9012.t1.start1Ggra9012.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1148439..1148441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9012.t1.CDS1Ggra9012.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1148439..1149053 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9012.t1.exon1Ggra9012.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1148439..1149053 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9012.t1.stop1Ggra9012.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1149051..1149053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9012.t1Ggra9012.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1148439..1149053 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9012.t1 ID=Ggra9012.t1|Name=Ggra9012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MFVFSISFVTFLLTFLSSTKVDGTPLLRTTDSNMTDPEECIAISARTVFE
DEVPKTLSAGALLFRCAEATNSSIVFKAGRINTQTLDTVCEDEPLFSVSE
ERERADLVLGNKPSMCMEGQCVFFDAVNQTIFLSALILEDEVEKLREDEI
EIPFLVTDVFYEFDGLLPQFGKSLSEAFASNINDPLVIRAEVFLGSTEID
CSRI*
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spliced messenger RNA

>Ggra9012.t1 ID=Ggra9012.t1|Name=Ggra9012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000860_pilon:1148439..1149053+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTCTTTAGTATCAGCTTTGTTACCTTTCTGCTGACTTTTTTGTC
ATCGACCAAAGTGGATGGTACGCCCCTACTACGCACCACGGATTCTAATA
TGACTGACCCTGAGGAATGCATCGCCATCAGCGCTCGCACGGTGTTCGAA
GATGAAGTTCCAAAGACACTTTCTGCGGGCGCCCTTCTATTCAGATGCGC
GGAGGCTACCAATTCCAGCATTGTATTCAAAGCAGGGAGGATAAACACAC
AGACTCTGGACACAGTTTGCGAGGACGAACCGCTGTTTTCCGTCTCTGAG
GAACGGGAAAGGGCGGATCTTGTGCTTGGGAATAAACCGTCCATGTGTAT
GGAAGGTCAATGCGTCTTCTTCGATGCAGTCAACCAGACGATTTTCCTTT
CAGCTCTTATCCTCGAAGATGAGGTGGAGAAACTTCGAGAAGACGAGATA
GAGATCCCGTTCTTGGTGACGGATGTCTTCTATGAGTTCGATGGCCTACT
TCCGCAGTTTGGCAAATCTTTGTCTGAAGCGTTTGCCAGCAACATCAATG
ATCCTCTTGTTATTCGTGCTGAAGTGTTCCTCGGATCTACTGAAATAGAC
TGCTCTCGTATTTAG
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protein sequence of Ggra9012.t1

>Ggra9012.t1 ID=Ggra9012.t1|Name=Ggra9012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MFVFSISFVTFLLTFLSSTKVDGTPLLRTTDSNMTDPEECIAISARTVFE
DEVPKTLSAGALLFRCAEATNSSIVFKAGRINTQTLDTVCEDEPLFSVSE
ERERADLVLGNKPSMCMEGQCVFFDAVNQTIFLSALILEDEVEKLREDEI
EIPFLVTDVFYEFDGLLPQFGKSLSEAFASNINDPLVIRAEVFLGSTEID
CSRI*
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mRNA from alignment at tig00000860_pilon:1148439..1149053+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9012.t1 ID=Ggra9012.t1|Name=Ggra9012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000860_pilon:1148439..1149053+ (Gracilaria gracilis GNS1m male)
ATGTTTGTCTTTAGTATCAGCTTTGTTACCTTTCTGCTGACTTTTTTGTC
ATCGACCAAAGTGGATGGTACGCCCCTACTACGCACCACGGATTCTAATA
TGACTGACCCTGAGGAATGCATCGCCATCAGCGCTCGCACGGTGTTCGAA
GATGAAGTTCCAAAGACACTTTCTGCGGGCGCCCTTCTATTCAGATGCGC
GGAGGCTACCAATTCCAGCATTGTATTCAAAGCAGGGAGGATAAACACAC
AGACTCTGGACACAGTTTGCGAGGACGAACCGCTGTTTTCCGTCTCTGAG
GAACGGGAAAGGGCGGATCTTGTGCTTGGGAATAAACCGTCCATGTGTAT
GGAAGGTCAATGCGTCTTCTTCGATGCAGTCAACCAGACGATTTTCCTTT
CAGCTCTTATCCTCGAAGATGAGGTGGAGAAACTTCGAGAAGACGAGATA
GAGATCCCGTTCTTGGTGACGGATGTCTTCTATGAGTTCGATGGCCTACT
TCCGCAGTTTGGCAAATCTTTGTCTGAAGCGTTTGCCAGCAACATCAATG
ATCCTCTTGTTATTCGTGCTGAAGTGTTCCTCGGATCTACTGAAATAGAC
TGCTCTCGTATTTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1148439..1149053+

>Ggra9012.t1 ID=Ggra9012.t1|Name=Ggra9012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000860_pilon:1148439..1149053+ (Gracilaria gracilis GNS1m male)
ATGTTTGTCTTTAGTATCAGCTTTGTTACCTTTCTGCTGACTTTTTTGTC
ATCGACCAAAGTGGATGGTACGCCCCTACTACGCACCACGGATTCTAATA
TGACTGACCCTGAGGAATGCATCGCCATCAGCGCTCGCACGGTGTTCGAA
GATGAAGTTCCAAAGACACTTTCTGCGGGCGCCCTTCTATTCAGATGCGC
GGAGGCTACCAATTCCAGCATTGTATTCAAAGCAGGGAGGATAAACACAC
AGACTCTGGACACAGTTTGCGAGGACGAACCGCTGTTTTCCGTCTCTGAG
GAACGGGAAAGGGCGGATCTTGTGCTTGGGAATAAACCGTCCATGTGTAT
GGAAGGTCAATGCGTCTTCTTCGATGCAGTCAACCAGACGATTTTCCTTT
CAGCTCTTATCCTCGAAGATGAGGTGGAGAAACTTCGAGAAGACGAGATA
GAGATCCCGTTCTTGGTGACGGATGTCTTCTATGAGTTCGATGGCCTACT
TCCGCAGTTTGGCAAATCTTTGTCTGAAGCGTTTGCCAGCAACATCAATG
ATCCTCTTGTTATTCGTGCTGAAGTGTTCCTCGGATCTACTGAAATAGAC
TGCTCTCGTATTTAG
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