Ggra901.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra901.t1
Unique NameGgra901.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:186318..187052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra901Ggra901Gracilaria gracilis GNS1m malegenetig00000049_pilon 186318..187052 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra901.t1.stop1Ggra901.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 186318..186320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra901.t1.CDS1Ggra901.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 186318..187052 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra901.t1.exon1Ggra901.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 186318..187052 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra901.t1.start1Ggra901.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 187050..187052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra901.t1Ggra901.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 186318..187052 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra901.t1 ID=Ggra901.t1|Name=Ggra901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MPHSSRLPPSALTVSAASSAGDAATAASAGASGAHNALKRGNTAIAPDMF
LRFSFKRPVRLRIESKKGSDFEVTEVGSRRRLFRILHKGSRATGTVCLFD
GDEQLVYKLKTFAFRLPFYVQVVDGVTKEPVATVIKKSAGHSLHVGNGHN
KKQFFMSIDANLKLNTFSTSMATVNTFQMLNVRSGAVVASGHRLSSKMGY
ELHVTPGHNVALLTMLTLSLQQYYTDHKITGSLKRRFLKRFFSH*
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spliced messenger RNA

>Ggra901.t1 ID=Ggra901.t1|Name=Ggra901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000049_pilon:186318..187052- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACTCGTCGCGCTTGCCGCCCTCCGCTCTCACCGTCTCCGCTGC
CAGCTCTGCTGGCGACGCCGCCACCGCCGCGTCCGCGGGTGCGTCGGGCG
CGCATAATGCGCTCAAGCGCGGCAACACCGCCATCGCGCCGGATATGTTT
CTGCGCTTCTCGTTCAAGAGGCCCGTTCGGCTGCGCATCGAGAGCAAGAA
GGGCTCCGACTTTGAAGTCACCGAGGTCGGCTCGCGTCGCCGCTTGTTCC
GAATCCTGCACAAGGGATCGCGAGCTACGGGCACTGTGTGTTTGTTTGAT
GGCGACGAACAGCTCGTCTACAAGTTGAAGACGTTTGCTTTTCGTCTTCC
GTTCTACGTGCAGGTTGTCGATGGCGTCACCAAGGAGCCCGTCGCCACCG
TCATCAAGAAGAGCGCGGGTCACTCCCTGCATGTTGGAAACGGTCATAAT
AAGAAACAGTTCTTTATGAGCATCGACGCCAACTTGAAGCTCAACACGTT
CAGTACATCCATGGCTACTGTCAACACTTTTCAAATGCTCAACGTTCGTA
GTGGTGCCGTTGTGGCTTCGGGTCATCGCTTGTCTTCCAAGATGGGCTAC
GAATTGCATGTCACGCCCGGACATAACGTTGCTCTGCTCACAATGCTAAC
GCTGTCTCTTCAACAATACTACACCGATCATAAGATTACTGGTTCGTTGA
AGCGCCGTTTCCTCAAGCGGTTTTTCTCCCACTGA
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protein sequence of Ggra901.t1

>Ggra901.t1 ID=Ggra901.t1|Name=Ggra901.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MPHSSRLPPSALTVSAASSAGDAATAASAGASGAHNALKRGNTAIAPDMF
LRFSFKRPVRLRIESKKGSDFEVTEVGSRRRLFRILHKGSRATGTVCLFD
GDEQLVYKLKTFAFRLPFYVQVVDGVTKEPVATVIKKSAGHSLHVGNGHN
KKQFFMSIDANLKLNTFSTSMATVNTFQMLNVRSGAVVASGHRLSSKMGY
ELHVTPGHNVALLTMLTLSLQQYYTDHKITGSLKRRFLKRFFSH*
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mRNA from alignment at tig00000049_pilon:186318..187052-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra901.t1 ID=Ggra901.t1|Name=Ggra901.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000049_pilon:186318..187052- (Gracilaria gracilis GNS1m male)
ATGCCGCACTCGTCGCGCTTGCCGCCCTCCGCTCTCACCGTCTCCGCTGC
CAGCTCTGCTGGCGACGCCGCCACCGCCGCGTCCGCGGGTGCGTCGGGCG
CGCATAATGCGCTCAAGCGCGGCAACACCGCCATCGCGCCGGATATGTTT
CTGCGCTTCTCGTTCAAGAGGCCCGTTCGGCTGCGCATCGAGAGCAAGAA
GGGCTCCGACTTTGAAGTCACCGAGGTCGGCTCGCGTCGCCGCTTGTTCC
GAATCCTGCACAAGGGATCGCGAGCTACGGGCACTGTGTGTTTGTTTGAT
GGCGACGAACAGCTCGTCTACAAGTTGAAGACGTTTGCTTTTCGTCTTCC
GTTCTACGTGCAGGTTGTCGATGGCGTCACCAAGGAGCCCGTCGCCACCG
TCATCAAGAAGAGCGCGGGTCACTCCCTGCATGTTGGAAACGGTCATAAT
AAGAAACAGTTCTTTATGAGCATCGACGCCAACTTGAAGCTCAACACGTT
CAGTACATCCATGGCTACTGTCAACACTTTTCAAATGCTCAACGTTCGTA
GTGGTGCCGTTGTGGCTTCGGGTCATCGCTTGTCTTCCAAGATGGGCTAC
GAATTGCATGTCACGCCCGGACATAACGTTGCTCTGCTCACAATGCTAAC
GCTGTCTCTTCAACAATACTACACCGATCATAAGATTACTGGTTCGTTGA
AGCGCCGTTTCCTCAAGCGGTTTTTCTCCCACTGA
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Coding sequence (CDS) from alignment at tig00000049_pilon:186318..187052-

>Ggra901.t1 ID=Ggra901.t1|Name=Ggra901.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000049_pilon:186318..187052- (Gracilaria gracilis GNS1m male)
ATGCCGCACTCGTCGCGCTTGCCGCCCTCCGCTCTCACCGTCTCCGCTGC
CAGCTCTGCTGGCGACGCCGCCACCGCCGCGTCCGCGGGTGCGTCGGGCG
CGCATAATGCGCTCAAGCGCGGCAACACCGCCATCGCGCCGGATATGTTT
CTGCGCTTCTCGTTCAAGAGGCCCGTTCGGCTGCGCATCGAGAGCAAGAA
GGGCTCCGACTTTGAAGTCACCGAGGTCGGCTCGCGTCGCCGCTTGTTCC
GAATCCTGCACAAGGGATCGCGAGCTACGGGCACTGTGTGTTTGTTTGAT
GGCGACGAACAGCTCGTCTACAAGTTGAAGACGTTTGCTTTTCGTCTTCC
GTTCTACGTGCAGGTTGTCGATGGCGTCACCAAGGAGCCCGTCGCCACCG
TCATCAAGAAGAGCGCGGGTCACTCCCTGCATGTTGGAAACGGTCATAAT
AAGAAACAGTTCTTTATGAGCATCGACGCCAACTTGAAGCTCAACACGTT
CAGTACATCCATGGCTACTGTCAACACTTTTCAAATGCTCAACGTTCGTA
GTGGTGCCGTTGTGGCTTCGGGTCATCGCTTGTCTTCCAAGATGGGCTAC
GAATTGCATGTCACGCCCGGACATAACGTTGCTCTGCTCACAATGCTAAC
GCTGTCTCTTCAACAATACTACACCGATCATAAGATTACTGGTTCGTTGA
AGCGCCGTTTCCTCAAGCGGTTTTTCTCCCACTGA
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