Ggra9007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9007.t1
Unique NameGgra9007.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1129000..1129926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706881.1
Preferred nameRPUSD1
PFAMsPseudoU_synth_2
Max annot lvl2759|Eukaryota
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue1.68e-37
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Descriptionpseudouridine synthase activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9007Ggra9007Gracilaria gracilis GNS1m malegenetig00000860_pilon 1129000..1129926 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1.start1Ggra9007.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1129000..1129002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1.CDS1Ggra9007.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1129000..1129926 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1.exon1Ggra9007.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1129000..1129926 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1.stop1Ggra9007.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1129924..1129926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9007.t1Ggra9007.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1129000..1129926 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MSAGVKLAPRQRDDDCAGGGARKAPRTATLQVLLYQRGRYVAVCKPPDVR
IDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRR
AAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMGADFRMKLSA
CGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVG
DATYGACHEAQLFERAPERMMLHASTLRVRLPPEQRPLPSRARLRRGDVF
DDAPVAQLRTDDPLTPQRMRGGGGGALRLADVRAPHRAARLRRSLSAPCM
PRHYSACA*
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spliced messenger RNA

>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000860_pilon:1129000..1129926+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGGCGTGAAGTTGGCGCCGCGCCAGCGCGATGACGACTGCGC
GGGTGGCGGCGCGCGGAAAGCGCCGCGGACGGCCACGCTGCAGGTGCTGC
TGTACCAGCGCGGGCGCTATGTGGCCGTTTGCAAGCCGCCCGACGTGCGC
ATCGACGGCGACTTCAAGCTGACGGTGGCCAAGTTGGTGCAGCACTTTCT
GCAAAGGCGCCACGAACAGCCGCAGTTTTGTACGCCGTACTTTGTGCACC
GGCTGGACTACGCCACGTCGGGCGCGCTGCTCATGGCGCTGAGCCGGCGC
GCGGCGGCGTTCGCGGCCAAGCAATTCGAGACGCGGCTGGTGGAGAAGAG
CTATGTGGCGCTGGTGCACGGGCACGTCTCGCCGACCATCGGCGGGGTGA
GCGCGCGCATCGCCAGCATGGGCGCCGACTTTCGCATGAAGCTGAGCGCG
TGCGGACGCAGCGCGCGCACGGGGGTGCGCGTGCTGTCGCACGGCACGTT
CCAAGGGCGCAAGGTCAGCAAGCTGGAGCTGCGGCCGGAGAGCGGGCGAC
GCCACCAGCTGCGGCTGCACTGCGCGCTGCTGGGCGCGCCCATCGTGGGC
GACGCCACGTACGGCGCGTGTCACGAGGCGCAGCTGTTCGAACGAGCGCC
GGAGCGCATGATGCTGCACGCCTCCACGCTGCGTGTGCGCCTGCCGCCAG
AGCAGCGTCCGCTGCCGTCGCGCGCGCGCCTCCGACGTGGCGACGTCTTC
GACGATGCGCCCGTCGCGCAGCTGCGCACCGACGACCCGCTCACGCCGCA
ACGTATGCGCGGCGGCGGCGGCGGCGCGCTGCGGCTGGCCGACGTGCGCG
CGCCGCACCGCGCCGCGCGCCTGCGCCGCTCTCTGAGCGCGCCGTGCATG
CCGCGCCATTACAGTGCTTGCGCTTGA
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protein sequence of Ggra9007.t1

>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MSAGVKLAPRQRDDDCAGGGARKAPRTATLQVLLYQRGRYVAVCKPPDVR
IDGDFKLTVAKLVQHFLQRRHEQPQFCTPYFVHRLDYATSGALLMALSRR
AAAFAAKQFETRLVEKSYVALVHGHVSPTIGGVSARIASMGADFRMKLSA
CGRSARTGVRVLSHGTFQGRKVSKLELRPESGRRHQLRLHCALLGAPIVG
DATYGACHEAQLFERAPERMMLHASTLRVRLPPEQRPLPSRARLRRGDVF
DDAPVAQLRTDDPLTPQRMRGGGGGALRLADVRAPHRAARLRRSLSAPCM
PRHYSACA*
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mRNA from alignment at tig00000860_pilon:1129000..1129926+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000860_pilon:1129000..1129926+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGGCGTGAAGTTGGCGCCGCGCCAGCGCGATGACGACTGCGC
GGGTGGCGGCGCGCGGAAAGCGCCGCGGACGGCCACGCTGCAGGTGCTGC
TGTACCAGCGCGGGCGCTATGTGGCCGTTTGCAAGCCGCCCGACGTGCGC
ATCGACGGCGACTTCAAGCTGACGGTGGCCAAGTTGGTGCAGCACTTTCT
GCAAAGGCGCCACGAACAGCCGCAGTTTTGTACGCCGTACTTTGTGCACC
GGCTGGACTACGCCACGTCGGGCGCGCTGCTCATGGCGCTGAGCCGGCGC
GCGGCGGCGTTCGCGGCCAAGCAATTCGAGACGCGGCTGGTGGAGAAGAG
CTATGTGGCGCTGGTGCACGGGCACGTCTCGCCGACCATCGGCGGGGTGA
GCGCGCGCATCGCCAGCATGGGCGCCGACTTTCGCATGAAGCTGAGCGCG
TGCGGACGCAGCGCGCGCACGGGGGTGCGCGTGCTGTCGCACGGCACGTT
CCAAGGGCGCAAGGTCAGCAAGCTGGAGCTGCGGCCGGAGAGCGGGCGAC
GCCACCAGCTGCGGCTGCACTGCGCGCTGCTGGGCGCGCCCATCGTGGGC
GACGCCACGTACGGCGCGTGTCACGAGGCGCAGCTGTTCGAACGAGCGCC
GGAGCGCATGATGCTGCACGCCTCCACGCTGCGTGTGCGCCTGCCGCCAG
AGCAGCGTCCGCTGCCGTCGCGCGCGCGCCTCCGACGTGGCGACGTCTTC
GACGATGCGCCCGTCGCGCAGCTGCGCACCGACGACCCGCTCACGCCGCA
ACGTATGCGCGGCGGCGGCGGCGGCGCGCTGCGGCTGGCCGACGTGCGCG
CGCCGCACCGCGCCGCGCGCCTGCGCCGCTCTCTGAGCGCGCCGTGCATG
CCGCGCCATTACAGTGCTTGCGCTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1129000..1129926+

>Ggra9007.t1 ID=Ggra9007.t1|Name=Ggra9007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000860_pilon:1129000..1129926+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGGCGTGAAGTTGGCGCCGCGCCAGCGCGATGACGACTGCGC
GGGTGGCGGCGCGCGGAAAGCGCCGCGGACGGCCACGCTGCAGGTGCTGC
TGTACCAGCGCGGGCGCTATGTGGCCGTTTGCAAGCCGCCCGACGTGCGC
ATCGACGGCGACTTCAAGCTGACGGTGGCCAAGTTGGTGCAGCACTTTCT
GCAAAGGCGCCACGAACAGCCGCAGTTTTGTACGCCGTACTTTGTGCACC
GGCTGGACTACGCCACGTCGGGCGCGCTGCTCATGGCGCTGAGCCGGCGC
GCGGCGGCGTTCGCGGCCAAGCAATTCGAGACGCGGCTGGTGGAGAAGAG
CTATGTGGCGCTGGTGCACGGGCACGTCTCGCCGACCATCGGCGGGGTGA
GCGCGCGCATCGCCAGCATGGGCGCCGACTTTCGCATGAAGCTGAGCGCG
TGCGGACGCAGCGCGCGCACGGGGGTGCGCGTGCTGTCGCACGGCACGTT
CCAAGGGCGCAAGGTCAGCAAGCTGGAGCTGCGGCCGGAGAGCGGGCGAC
GCCACCAGCTGCGGCTGCACTGCGCGCTGCTGGGCGCGCCCATCGTGGGC
GACGCCACGTACGGCGCGTGTCACGAGGCGCAGCTGTTCGAACGAGCGCC
GGAGCGCATGATGCTGCACGCCTCCACGCTGCGTGTGCGCCTGCCGCCAG
AGCAGCGTCCGCTGCCGTCGCGCGCGCGCCTCCGACGTGGCGACGTCTTC
GACGATGCGCCCGTCGCGCAGCTGCGCACCGACGACCCGCTCACGCCGCA
ACGTATGCGCGGCGGCGGCGGCGGCGCGCTGCGGCTGGCCGACGTGCGCG
CGCCGCACCGCGCCGCGCGCCTGCGCCGCTCTCTGAGCGCGCCGTGCATG
CCGCGCCATTACAGTGCTTGCGCTTGA
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