Ggra9002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9002.t1
Unique NameGgra9002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1103792..1104433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S246_2V6.1
PFAMsMaf
Max annot lvl35493|Streptophyta
KEGG koko:K06287
Evalue5.24e-47
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,37PFH@33090|Viridiplantae,3G84T@35493|Streptophyta
DescriptionMaf-like protein
COG categoryD
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9002Ggra9002Gracilaria gracilis GNS1m malegenetig00000860_pilon 1103792..1104433 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9002.t1.start1Ggra9002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1103792..1103794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9002.t1.CDS1Ggra9002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1103792..1104433 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9002.t1.exon1Ggra9002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1103792..1104433 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9002.t1.stop1Ggra9002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1104431..1104433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9002.t1Ggra9002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1103792..1104433 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9002.t1 ID=Ggra9002.t1|Name=Ggra9002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MAVVGDARWSSIGRLILGSKSWSRRTVLEEMGVAKIDVEIPDIDERSIRH
EDPRELVKRIALAKARALLPRIQPAPSGRTILITGDSVVTHKGRILEKPA
HEKEARQFLNSYATGPATTVASVAVIDVAKKHVWMGVDEAEVYFQKMPED
VIDELVSTGGALESAGGLRIEHPAVQKYIDCIIGHKTAVMGFSKPLAERL
LREALSSQGGNPI*
back to top

spliced messenger RNA

>Ggra9002.t1 ID=Ggra9002.t1|Name=Ggra9002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000860_pilon:1103792..1104433+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGGTAGGGGATGCGCGATGGTCATCCATCGGTCGTCTGATTCT
AGGATCCAAGTCATGGTCTCGCCGAACGGTTCTTGAAGAAATGGGAGTAG
CCAAAATTGATGTGGAGATACCAGATATAGACGAACGCTCAATTCGTCAT
GAGGATCCTCGAGAGCTAGTTAAAAGAATCGCTCTCGCGAAAGCCCGGGC
CCTACTTCCTCGAATACAACCAGCGCCATCTGGTAGAACAATCTTAATCA
CTGGGGATTCTGTCGTCACACATAAAGGACGAATCTTGGAGAAACCAGCT
CACGAGAAGGAAGCACGTCAATTTCTAAACAGTTATGCAACTGGTCCAGC
AACAACCGTGGCTAGTGTTGCTGTTATCGATGTTGCAAAGAAGCACGTAT
GGATGGGGGTTGATGAAGCTGAGGTTTACTTTCAGAAAATGCCGGAGGAC
GTTATCGATGAGCTAGTTTCCACAGGTGGTGCTCTTGAAAGTGCGGGTGG
TTTGAGGATCGAGCACCCTGCCGTACAAAAATATATCGACTGCATAATAG
GACACAAGACTGCTGTTATGGGATTCTCTAAGCCCTTGGCAGAACGACTT
CTGCGTGAAGCCCTTTCTTCGCAAGGTGGCAATCCGATTTGA
back to top

protein sequence of Ggra9002.t1

>Ggra9002.t1 ID=Ggra9002.t1|Name=Ggra9002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MAVVGDARWSSIGRLILGSKSWSRRTVLEEMGVAKIDVEIPDIDERSIRH
EDPRELVKRIALAKARALLPRIQPAPSGRTILITGDSVVTHKGRILEKPA
HEKEARQFLNSYATGPATTVASVAVIDVAKKHVWMGVDEAEVYFQKMPED
VIDELVSTGGALESAGGLRIEHPAVQKYIDCIIGHKTAVMGFSKPLAERL
LREALSSQGGNPI*
back to top

mRNA from alignment at tig00000860_pilon:1103792..1104433+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9002.t1 ID=Ggra9002.t1|Name=Ggra9002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000860_pilon:1103792..1104433+ (Gracilaria gracilis GNS1m male)
ATGGCAGTGGTAGGGGATGCGCGATGGTCATCCATCGGTCGTCTGATTCT
AGGATCCAAGTCATGGTCTCGCCGAACGGTTCTTGAAGAAATGGGAGTAG
CCAAAATTGATGTGGAGATACCAGATATAGACGAACGCTCAATTCGTCAT
GAGGATCCTCGAGAGCTAGTTAAAAGAATCGCTCTCGCGAAAGCCCGGGC
CCTACTTCCTCGAATACAACCAGCGCCATCTGGTAGAACAATCTTAATCA
CTGGGGATTCTGTCGTCACACATAAAGGACGAATCTTGGAGAAACCAGCT
CACGAGAAGGAAGCACGTCAATTTCTAAACAGTTATGCAACTGGTCCAGC
AACAACCGTGGCTAGTGTTGCTGTTATCGATGTTGCAAAGAAGCACGTAT
GGATGGGGGTTGATGAAGCTGAGGTTTACTTTCAGAAAATGCCGGAGGAC
GTTATCGATGAGCTAGTTTCCACAGGTGGTGCTCTTGAAAGTGCGGGTGG
TTTGAGGATCGAGCACCCTGCCGTACAAAAATATATCGACTGCATAATAG
GACACAAGACTGCTGTTATGGGATTCTCTAAGCCCTTGGCAGAACGACTT
CTGCGTGAAGCCCTTTCTTCGCAAGGTGGCAATCCGATTTGA
back to top

Coding sequence (CDS) from alignment at tig00000860_pilon:1103792..1104433+

>Ggra9002.t1 ID=Ggra9002.t1|Name=Ggra9002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000860_pilon:1103792..1104433+ (Gracilaria gracilis GNS1m male)
ATGGCAGTGGTAGGGGATGCGCGATGGTCATCCATCGGTCGTCTGATTCT
AGGATCCAAGTCATGGTCTCGCCGAACGGTTCTTGAAGAAATGGGAGTAG
CCAAAATTGATGTGGAGATACCAGATATAGACGAACGCTCAATTCGTCAT
GAGGATCCTCGAGAGCTAGTTAAAAGAATCGCTCTCGCGAAAGCCCGGGC
CCTACTTCCTCGAATACAACCAGCGCCATCTGGTAGAACAATCTTAATCA
CTGGGGATTCTGTCGTCACACATAAAGGACGAATCTTGGAGAAACCAGCT
CACGAGAAGGAAGCACGTCAATTTCTAAACAGTTATGCAACTGGTCCAGC
AACAACCGTGGCTAGTGTTGCTGTTATCGATGTTGCAAAGAAGCACGTAT
GGATGGGGGTTGATGAAGCTGAGGTTTACTTTCAGAAAATGCCGGAGGAC
GTTATCGATGAGCTAGTTTCCACAGGTGGTGCTCTTGAAAGTGCGGGTGG
TTTGAGGATCGAGCACCCTGCCGTACAAAAATATATCGACTGCATAATAG
GACACAAGACTGCTGTTATGGGATTCTCTAAGCCCTTGGCAGAACGACTT
CTGCGTGAAGCCCTTTCTTCGCAAGGTGGCAATCCGATTTGA
back to top