Ggra8997.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8997.t1
Unique Name	Ggra8997.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	709

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1084326..1086452 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8997	Ggra8997	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1084326..1086452 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8997.t1.stop1	Ggra8997.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1084326..1084328 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8997.t1.CDS1	Ggra8997.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1084326..1086452 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8997.t1.exon1	Ggra8997.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1084326..1086452 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8997.t1.start1	Ggra8997.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1086450..1086452 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8997.t1	Ggra8997.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1084326..1086452 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1084326..1086452-
coding sequence from alignment at tig00000860_pilon:1084326..1086452-

mRNA sequence

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=709bp
MSFSTARAPPPPPPPPPPPPPLPSLPVDAPAFAALVNGHLHQLHRQHDAH
LSHGADLPLRHVRHAALTLRRAAALHLALLQIESLPPPPDDDARVCASRR
YLRGVRTRLQAAVVMPDVNALQVLVHSAGAVLDGFLMDSAGVFEPVVVDE
RSNALDVPLPRARAKRRSDMVASSSSLQDDDMLPPPPFPSMHDGMEQPRL
AYRPSIFGWSLRESRSSAPGTRKWRKCCGLSWTDLSTRDRMVLWLYVLMV
LGALIAVAAVTTTFIQQAVTPGSFIRSTSGEQLMSPVVTACLSQRGVPFS
RLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCD
AKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKHEAVVRDTSFENSSV
LHLFTDSYFLQCMKSQSGLDDRSLEFLHGVIAQNAAELQELNILSVANGG
NVTQLGEEDIEAILWQQACNLFYFAYFPIKQNKRDDSVDIRYQFNGTAWE
AVGNGPYFEPKVSPNFLPEESLQLFVSTNSTTRAGQLGQQQDVILIGPDT
QTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARLGYWLRYKVFYNYNRF
VVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREKV
RLLRRGPEVYVWSRARRQVGMVGGDDGGGMGGGAMAVEEDDALGTRRGSS
VLLPGLNM*

spliced messenger RNA

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000860_pilon:1084326..1086452- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTCTCCACCGCACGCGCACCGCCACCGCCACCGCCACCGCCACC
GCCACCGCCACCGCTTCCGTCTCTCCCCGTCGACGCGCCCGCCTTCGCCG
CGCTCGTCAACGGCCATCTGCACCAGCTGCATCGTCAGCATGACGCACAC
CTCTCGCACGGCGCCGACCTCCCTCTCCGCCACGTGCGCCATGCCGCGCT
CACGCTACGTCGTGCCGCCGCGCTACATCTCGCGCTGCTACAGATCGAGT
CACTGCCACCACCACCTGACGACGACGCCCGCGTGTGCGCCAGTCGCCGT
TACTTGCGCGGCGTGCGCACAAGATTGCAGGCGGCGGTTGTGATGCCTGA
TGTGAACGCGTTACAAGTGTTGGTTCATAGCGCGGGCGCGGTGTTGGATG
GCTTTTTGATGGACAGCGCGGGTGTGTTTGAGCCTGTGGTGGTGGACGAG
CGTTCTAATGCGCTTGATGTGCCGTTGCCGCGCGCACGCGCCAAACGTCG
GTCCGACATGGTTGCGTCGTCGTCGTCGCTCCAAGATGACGACATGCTGC
CGCCGCCGCCCTTTCCGTCCATGCACGATGGCATGGAACAGCCCAGATTG
GCGTATCGACCGTCTATCTTCGGCTGGTCGCTTCGCGAGTCACGTTCTTC
GGCGCCGGGTACGCGCAAGTGGCGCAAGTGTTGCGGGCTGTCTTGGACCG
ACCTTTCTACGCGCGATCGCATGGTTTTGTGGCTGTACGTGCTGATGGTG
CTTGGCGCACTCATTGCGGTGGCGGCGGTCACGACGACGTTTATTCAGCA
GGCGGTGACGCCGGGCTCGTTCATACGATCCACCAGCGGTGAGCAGCTGA
TGTCGCCAGTTGTAACGGCGTGCTTGAGTCAGAGGGGCGTGCCGTTTTCT
AGGCTGCAGTTGTTCGACTTTGTGGACGCGGAACAGCGCTCGTTCGCGGG
CACGGTGCCGGAGGCGCAGTTTGGTGAGCAGCAGAATATCGACGCGTTCA
AGGGCGTTGTGGAGCGTTTTTGGGACAACCCCGATGGCGAGGATTGTGAC
GCAAAGGTGGGTGATTACTTTCCGTTCCCGTTGAGAAGCTTGAACGATAT
TGCGAGCGGTAAGAGCTCCACGCGCTGTAGACAGTGTTACCGGGTAGGTA
GGAAGCATGAGGCGGTGGTGAGGGACACGTCGTTTGAGAATAGCTCCGTG
CTTCACTTGTTCACGGACAGTTACTTCTTGCAGTGCATGAAGAGTCAGTC
GGGGCTTGACGATCGCAGTTTGGAGTTCCTGCACGGCGTGATTGCGCAGA
ACGCGGCAGAGCTACAAGAGCTGAACATTTTGAGCGTGGCGAACGGCGGC
AATGTGACGCAGTTGGGGGAGGAGGACATTGAGGCCATCTTGTGGCAGCA
GGCGTGTAACTTGTTCTACTTTGCGTACTTTCCCATCAAACAGAACAAAC
GCGACGACAGCGTGGACATTCGCTACCAGTTCAACGGCACGGCGTGGGAG
GCGGTGGGAAACGGCCCTTACTTTGAACCCAAGGTGTCGCCGAACTTCCT
GCCGGAGGAATCGCTGCAGTTGTTTGTGAGCACCAACTCCACGACGCGCG
CAGGGCAGCTGGGTCAACAGCAAGACGTGATTCTGATCGGGCCGGACACA
CAGACGTTTGCAACGTTCCGACCGGTCGTGGTGTACGGCGTAGATCGGTA
CGACATCTCGTCGTCGACGTCCGGGCTGCGCAACGAAATGGTTGTGGCAC
GATTGGGGTACTGGCTTCGGTACAAGGTTTTCTACAATTACAACCGCTTC
GTGGTGGATGAGTATTACCGCGAGTCGACGTACCCGGTGGGACAGTGGAT
CGTGGACTTGACAGGGTATGCGACGCTGTTCACGGGAGCGAGCGTGTTTT
CGTTGTTGCTGCTGCCGCTGCTGAGGACGGTGCGGAAACGTGAGAAGGTG
CGACTGTTGAGGAGAGGACCGGAGGTTTATGTGTGGAGTCGCGCCAGACG
GCAGGTGGGTATGGTGGGCGGAGATGATGGCGGCGGCATGGGTGGTGGCG
CGATGGCGGTGGAGGAGGACGATGCGTTGGGCACGCGGCGAGGGAGCTCG
GTGCTGCTGCCGGGCTTGAACATGTGA

protein sequence of Ggra8997.t1

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=709bp
MSFSTARAPPPPPPPPPPPPPLPSLPVDAPAFAALVNGHLHQLHRQHDAH
LSHGADLPLRHVRHAALTLRRAAALHLALLQIESLPPPPDDDARVCASRR
YLRGVRTRLQAAVVMPDVNALQVLVHSAGAVLDGFLMDSAGVFEPVVVDE
RSNALDVPLPRARAKRRSDMVASSSSLQDDDMLPPPPFPSMHDGMEQPRL
AYRPSIFGWSLRESRSSAPGTRKWRKCCGLSWTDLSTRDRMVLWLYVLMV
LGALIAVAAVTTTFIQQAVTPGSFIRSTSGEQLMSPVVTACLSQRGVPFS
RLQLFDFVDAEQRSFAGTVPEAQFGEQQNIDAFKGVVERFWDNPDGEDCD
AKVGDYFPFPLRSLNDIASGKSSTRCRQCYRVGRKHEAVVRDTSFENSSV
LHLFTDSYFLQCMKSQSGLDDRSLEFLHGVIAQNAAELQELNILSVANGG
NVTQLGEEDIEAILWQQACNLFYFAYFPIKQNKRDDSVDIRYQFNGTAWE
AVGNGPYFEPKVSPNFLPEESLQLFVSTNSTTRAGQLGQQQDVILIGPDT
QTFATFRPVVVYGVDRYDISSSTSGLRNEMVVARLGYWLRYKVFYNYNRF
VVDEYYRESTYPVGQWIVDLTGYATLFTGASVFSLLLLPLLRTVRKREKV
RLLRRGPEVYVWSRARRQVGMVGGDDGGGMGGGAMAVEEDDALGTRRGSS
VLLPGLNM*

mRNA from alignment at tig00000860_pilon:1084326..1086452-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2127bp|location=Sequence derived from alignment at tig00000860_pilon:1084326..1086452- (Gracilaria gracilis GNS1m male)
ATGTCCTTCTCCACCGCACGCGCACCGCCACCGCCACCGCCACCGCCACC
GCCACCGCCACCGCTTCCGTCTCTCCCCGTCGACGCGCCCGCCTTCGCCG
CGCTCGTCAACGGCCATCTGCACCAGCTGCATCGTCAGCATGACGCACAC
CTCTCGCACGGCGCCGACCTCCCTCTCCGCCACGTGCGCCATGCCGCGCT
CACGCTACGTCGTGCCGCCGCGCTACATCTCGCGCTGCTACAGATCGAGT
CACTGCCACCACCACCTGACGACGACGCCCGCGTGTGCGCCAGTCGCCGT
TACTTGCGCGGCGTGCGCACAAGATTGCAGGCGGCGGTTGTGATGCCTGA
TGTGAACGCGTTACAAGTGTTGGTTCATAGCGCGGGCGCGGTGTTGGATG
GCTTTTTGATGGACAGCGCGGGTGTGTTTGAGCCTGTGGTGGTGGACGAG
CGTTCTAATGCGCTTGATGTGCCGTTGCCGCGCGCACGCGCCAAACGTCG
GTCCGACATGGTTGCGTCGTCGTCGTCGCTCCAAGATGACGACATGCTGC
CGCCGCCGCCCTTTCCGTCCATGCACGATGGCATGGAACAGCCCAGATTG
GCGTATCGACCGTCTATCTTCGGCTGGTCGCTTCGCGAGTCACGTTCTTC
GGCGCCGGGTACGCGCAAGTGGCGCAAGTGTTGCGGGCTGTCTTGGACCG
ACCTTTCTACGCGCGATCGCATGGTTTTGTGGCTGTACGTGCTGATGGTG
CTTGGCGCACTCATTGCGGTGGCGGCGGTCACGACGACGTTTATTCAGCA
GGCGGTGACGCCGGGCTCGTTCATACGATCCACCAGCGGTGAGCAGCTGA
TGTCGCCAGTTGTAACGGCGTGCTTGAGTCAGAGGGGCGTGCCGTTTTCT
AGGCTGCAGTTGTTCGACTTTGTGGACGCGGAACAGCGCTCGTTCGCGGG
CACGGTGCCGGAGGCGCAGTTTGGTGAGCAGCAGAATATCGACGCGTTCA
AGGGCGTTGTGGAGCGTTTTTGGGACAACCCCGATGGCGAGGATTGTGAC
GCAAAGGTGGGTGATTACTTTCCGTTCCCGTTGAGAAGCTTGAACGATAT
TGCGAGCGGTAAGAGCTCCACGCGCTGTAGACAGTGTTACCGGGTAGGTA
GGAAGCATGAGGCGGTGGTGAGGGACACGTCGTTTGAGAATAGCTCCGTG
CTTCACTTGTTCACGGACAGTTACTTCTTGCAGTGCATGAAGAGTCAGTC
GGGGCTTGACGATCGCAGTTTGGAGTTCCTGCACGGCGTGATTGCGCAGA
ACGCGGCAGAGCTACAAGAGCTGAACATTTTGAGCGTGGCGAACGGCGGC
AATGTGACGCAGTTGGGGGAGGAGGACATTGAGGCCATCTTGTGGCAGCA
GGCGTGTAACTTGTTCTACTTTGCGTACTTTCCCATCAAACAGAACAAAC
GCGACGACAGCGTGGACATTCGCTACCAGTTCAACGGCACGGCGTGGGAG
GCGGTGGGAAACGGCCCTTACTTTGAACCCAAGGTGTCGCCGAACTTCCT
GCCGGAGGAATCGCTGCAGTTGTTTGTGAGCACCAACTCCACGACGCGCG
CAGGGCAGCTGGGTCAACAGCAAGACGTGATTCTGATCGGGCCGGACACA
CAGACGTTTGCAACGTTCCGACCGGTCGTGGTGTACGGCGTAGATCGGTA
CGACATCTCGTCGTCGACGTCCGGGCTGCGCAACGAAATGGTTGTGGCAC
GATTGGGGTACTGGCTTCGGTACAAGGTTTTCTACAATTACAACCGCTTC
GTGGTGGATGAGTATTACCGCGAGTCGACGTACCCGGTGGGACAGTGGAT
CGTGGACTTGACAGGGTATGCGACGCTGTTCACGGGAGCGAGCGTGTTTT
CGTTGTTGCTGCTGCCGCTGCTGAGGACGGTGCGGAAACGTGAGAAGGTG
CGACTGTTGAGGAGAGGACCGGAGGTTTATGTGTGGAGTCGCGCCAGACG
GCAGGTGGGTATGGTGGGCGGAGATGATGGCGGCGGCATGGGTGGTGGCG
CGATGGCGGTGGAGGAGGACGATGCGTTGGGCACGCGGCGAGGGAGCTCG
GTGCTGCTGCCGGGCTTGAACATGTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:1084326..1086452-

>Ggra8997.t1 ID=Ggra8997.t1|Name=Ggra8997.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2127bp|location=Sequence derived from alignment at tig00000860_pilon:1084326..1086452- (Gracilaria gracilis GNS1m male)
ATGTCCTTCTCCACCGCACGCGCACCGCCACCGCCACCGCCACCGCCACC
GCCACCGCCACCGCTTCCGTCTCTCCCCGTCGACGCGCCCGCCTTCGCCG
CGCTCGTCAACGGCCATCTGCACCAGCTGCATCGTCAGCATGACGCACAC
CTCTCGCACGGCGCCGACCTCCCTCTCCGCCACGTGCGCCATGCCGCGCT
CACGCTACGTCGTGCCGCCGCGCTACATCTCGCGCTGCTACAGATCGAGT
CACTGCCACCACCACCTGACGACGACGCCCGCGTGTGCGCCAGTCGCCGT
TACTTGCGCGGCGTGCGCACAAGATTGCAGGCGGCGGTTGTGATGCCTGA
TGTGAACGCGTTACAAGTGTTGGTTCATAGCGCGGGCGCGGTGTTGGATG
GCTTTTTGATGGACAGCGCGGGTGTGTTTGAGCCTGTGGTGGTGGACGAG
CGTTCTAATGCGCTTGATGTGCCGTTGCCGCGCGCACGCGCCAAACGTCG
GTCCGACATGGTTGCGTCGTCGTCGTCGCTCCAAGATGACGACATGCTGC
CGCCGCCGCCCTTTCCGTCCATGCACGATGGCATGGAACAGCCCAGATTG
GCGTATCGACCGTCTATCTTCGGCTGGTCGCTTCGCGAGTCACGTTCTTC
GGCGCCGGGTACGCGCAAGTGGCGCAAGTGTTGCGGGCTGTCTTGGACCG
ACCTTTCTACGCGCGATCGCATGGTTTTGTGGCTGTACGTGCTGATGGTG
CTTGGCGCACTCATTGCGGTGGCGGCGGTCACGACGACGTTTATTCAGCA
GGCGGTGACGCCGGGCTCGTTCATACGATCCACCAGCGGTGAGCAGCTGA
TGTCGCCAGTTGTAACGGCGTGCTTGAGTCAGAGGGGCGTGCCGTTTTCT
AGGCTGCAGTTGTTCGACTTTGTGGACGCGGAACAGCGCTCGTTCGCGGG
CACGGTGCCGGAGGCGCAGTTTGGTGAGCAGCAGAATATCGACGCGTTCA
AGGGCGTTGTGGAGCGTTTTTGGGACAACCCCGATGGCGAGGATTGTGAC
GCAAAGGTGGGTGATTACTTTCCGTTCCCGTTGAGAAGCTTGAACGATAT
TGCGAGCGGTAAGAGCTCCACGCGCTGTAGACAGTGTTACCGGGTAGGTA
GGAAGCATGAGGCGGTGGTGAGGGACACGTCGTTTGAGAATAGCTCCGTG
CTTCACTTGTTCACGGACAGTTACTTCTTGCAGTGCATGAAGAGTCAGTC
GGGGCTTGACGATCGCAGTTTGGAGTTCCTGCACGGCGTGATTGCGCAGA
ACGCGGCAGAGCTACAAGAGCTGAACATTTTGAGCGTGGCGAACGGCGGC
AATGTGACGCAGTTGGGGGAGGAGGACATTGAGGCCATCTTGTGGCAGCA
GGCGTGTAACTTGTTCTACTTTGCGTACTTTCCCATCAAACAGAACAAAC
GCGACGACAGCGTGGACATTCGCTACCAGTTCAACGGCACGGCGTGGGAG
GCGGTGGGAAACGGCCCTTACTTTGAACCCAAGGTGTCGCCGAACTTCCT
GCCGGAGGAATCGCTGCAGTTGTTTGTGAGCACCAACTCCACGACGCGCG
CAGGGCAGCTGGGTCAACAGCAAGACGTGATTCTGATCGGGCCGGACACA
CAGACGTTTGCAACGTTCCGACCGGTCGTGGTGTACGGCGTAGATCGGTA
CGACATCTCGTCGTCGACGTCCGGGCTGCGCAACGAAATGGTTGTGGCAC
GATTGGGGTACTGGCTTCGGTACAAGGTTTTCTACAATTACAACCGCTTC
GTGGTGGATGAGTATTACCGCGAGTCGACGTACCCGGTGGGACAGTGGAT
CGTGGACTTGACAGGGTATGCGACGCTGTTCACGGGAGCGAGCGTGTTTT
CGTTGTTGCTGCTGCCGCTGCTGAGGACGGTGCGGAAACGTGAGAAGGTG
CGACTGTTGAGGAGAGGACCGGAGGTTTATGTGTGGAGTCGCGCCAGACG
GCAGGTGGGTATGGTGGGCGGAGATGATGGCGGCGGCATGGGTGGTGGCG
CGATGGCGGTGGAGGAGGACGATGCGTTGGGCACGCGGCGAGGGAGCTCG
GTGCTGCTGCCGGGCTTGAACATGTGA