Ggra8996.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8996.t1
Unique Name	Ggra8996.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	668

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1080643..1082646 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8996	Ggra8996	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1080643..1082646 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8996.t1.start1	Ggra8996.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1080643..1080645 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8996.t1.CDS1	Ggra8996.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1080643..1082646 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8996.t1.exon1	Ggra8996.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1080643..1082646 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8996.t1.stop1	Ggra8996.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1082644..1082646 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8996.t1	Ggra8996.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1080643..1082646 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1080643..1082646+
coding sequence from alignment at tig00000860_pilon:1080643..1082646+

mRNA sequence

>Ggra8996.t1 ID=Ggra8996.t1|Name=Ggra8996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=668bp
MNINAVLFVALLAVLTILLSRLRHIFFASEQNHIPVLNTGSKRTTGRSPP
SPSCTVTASANPTAPVSRAPRHRPGRNICVQSVPGVGALAPHRTAPGSGS
HTPQALPNGPHAGHLATSRPRCRSPPPSPPHRNQRTSQPLPVPQRTARTP
ECPPSVASRKHSAPSTPELHASSASKKGLFNGLSRKRSGSKGLEPLKQQN
RLPAPLLTSKLAKRVGTSSVLAQDSQKSFAGEKGIVLASPKCKKSLSDIL
GSTHTSSKVRKPLAQVTRLPAPLHAKAKLAARAGRYPSSPESAQKGLKSL
ADATPGRLEKHETDGGNVENRGDTSRTQAKVIKVCSANSIAQPRKAGVET
ESHQKPQIEQTFHTVQKSVNLDGKRPSEKSCTAFEPPAKKPRRSHDSNSV
RDLKETSVVVGILQLDPGPVILRRSNLVSFHYRSLEEALENLRQKCELLE
HSSFVSERAGSLLAQCVYIGLIDPKVFFIPHPLRLCFQSACVLLAGYACD
EKREATEVCNAFSTNETKYTIKFLLHVKECLSIQGVTQHTLKQVQVMRTG
EYSRELLARYCRLSGEISEREQNIAEKVLRLVQNEFRHTSTLETTKVAAS
LNIVLSVTKKNIPSVETMIQDLTGIRASTIKSFTMEIRQLANRNNPDIIM
MEAQKEAIAIACETIDD*

spliced messenger RNA

>Ggra8996.t1 ID=Ggra8996.t1|Name=Ggra8996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00000860_pilon:1080643..1082646+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATAAACGCAGTTTTGTTCGTCGCTCTGCTGGCGGTTTTAACCAT
TCTTCTTTCTCGTTTAAGGCACATCTTCTTTGCATCTGAGCAAAATCACA
TACCCGTACTCAACACCGGCTCTAAACGTACAACCGGGAGGTCGCCACCC
TCACCATCTTGCACCGTTACCGCGTCTGCAAATCCGACTGCGCCTGTGTC
TCGAGCTCCACGCCACCGCCCAGGGCGCAATATCTGCGTGCAGAGTGTCC
CTGGCGTCGGTGCGCTCGCACCCCACCGAACAGCCCCCGGATCGGGTTCG
CACACACCCCAAGCCCTTCCAAATGGCCCTCATGCCGGTCACCTCGCCAC
GTCCCGTCCGCGGTGCCGCTCTCCCCCGCCTTCACCGCCGCATCGCAACC
AGCGCACATCACAGCCGTTGCCCGTGCCCCAGCGCACGGCGAGGACGCCC
GAATGCCCACCCAGCGTTGCATCGCGCAAACACTCGGCTCCATCAACACC
TGAGCTCCATGCATCTTCTGCATCCAAGAAAGGCCTTTTCAATGGCTTAA
GCCGAAAGCGCTCAGGCTCCAAAGGCTTGGAGCCGTTGAAACAACAAAAT
CGTCTTCCAGCACCGCTGCTCACCTCAAAGCTTGCTAAGCGAGTCGGAAC
AAGCTCTGTGTTGGCCCAAGATAGCCAAAAGTCTTTTGCTGGGGAAAAAG
GTATTGTGCTTGCATCCCCTAAATGCAAGAAGAGCCTTTCCGATATCTTG
GGAAGTACGCATACAAGCTCCAAGGTTCGTAAGCCATTGGCGCAAGTGAC
TCGTCTGCCAGCCCCTTTGCACGCTAAAGCAAAGCTTGCCGCTCGAGCAG
GACGATATCCTTCAAGCCCCGAATCGGCGCAAAAAGGGCTGAAGTCCCTT
GCTGATGCTACGCCTGGCAGGCTTGAAAAGCATGAAACCGATGGGGGGAA
TGTAGAAAACAGGGGCGACACATCGAGAACCCAGGCCAAAGTGATCAAAG
TCTGCAGCGCCAATTCCATCGCTCAACCCCGGAAAGCAGGCGTCGAAACC
GAAAGCCATCAAAAGCCTCAGATTGAGCAAACATTCCACACGGTGCAAAA
GAGCGTCAATTTAGATGGCAAACGTCCTAGCGAAAAGAGTTGTACGGCGT
TTGAGCCTCCTGCAAAGAAACCGAGACGCAGCCATGATAGTAACTCTGTC
CGAGATTTGAAAGAGACCTCTGTAGTAGTTGGAATACTTCAATTGGACCC
AGGTCCTGTAATTTTGCGTCGCTCGAACCTCGTTTCGTTTCATTATCGTT
CCCTCGAGGAGGCTCTGGAAAATCTGCGACAAAAGTGTGAGCTTCTGGAG
CATTCCAGTTTTGTCAGCGAAAGGGCGGGGTCCTTGCTTGCACAATGTGT
GTACATTGGACTAATTGACCCAAAGGTTTTCTTCATACCCCATCCATTGC
GGCTGTGCTTTCAATCAGCATGCGTTCTACTCGCAGGGTACGCTTGCGAT
GAGAAGCGGGAAGCCACCGAGGTCTGCAACGCCTTTAGTACGAACGAGAC
GAAATATACGATCAAATTTCTCCTCCACGTGAAGGAATGTTTGTCGATAC
AAGGAGTCACACAGCATACCCTCAAACAAGTGCAGGTGATGAGAACTGGT
GAATATTCCAGGGAACTACTGGCCCGATATTGTCGACTCAGCGGCGAAAT
CTCGGAGAGAGAGCAAAATATTGCTGAGAAGGTACTGCGTTTGGTTCAAA
ACGAATTTCGTCATACGAGCACACTGGAGACAACCAAAGTGGCTGCTTCC
TTGAACATTGTGCTGAGTGTGACGAAAAAGAATATCCCTTCTGTAGAGAC
TATGATCCAAGATTTAACTGGTATCCGCGCCTCAACTATCAAGAGCTTTA
CCATGGAAATTAGGCAACTTGCCAATCGCAACAATCCAGACATCATCATG
ATGGAAGCCCAGAAAGAAGCAATCGCCATCGCATGCGAGACCATCGATGA
TTAG

protein sequence of Ggra8996.t1

>Ggra8996.t1 ID=Ggra8996.t1|Name=Ggra8996.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=668bp
MNINAVLFVALLAVLTILLSRLRHIFFASEQNHIPVLNTGSKRTTGRSPP
SPSCTVTASANPTAPVSRAPRHRPGRNICVQSVPGVGALAPHRTAPGSGS
HTPQALPNGPHAGHLATSRPRCRSPPPSPPHRNQRTSQPLPVPQRTARTP
ECPPSVASRKHSAPSTPELHASSASKKGLFNGLSRKRSGSKGLEPLKQQN
RLPAPLLTSKLAKRVGTSSVLAQDSQKSFAGEKGIVLASPKCKKSLSDIL
GSTHTSSKVRKPLAQVTRLPAPLHAKAKLAARAGRYPSSPESAQKGLKSL
ADATPGRLEKHETDGGNVENRGDTSRTQAKVIKVCSANSIAQPRKAGVET
ESHQKPQIEQTFHTVQKSVNLDGKRPSEKSCTAFEPPAKKPRRSHDSNSV
RDLKETSVVVGILQLDPGPVILRRSNLVSFHYRSLEEALENLRQKCELLE
HSSFVSERAGSLLAQCVYIGLIDPKVFFIPHPLRLCFQSACVLLAGYACD
EKREATEVCNAFSTNETKYTIKFLLHVKECLSIQGVTQHTLKQVQVMRTG
EYSRELLARYCRLSGEISEREQNIAEKVLRLVQNEFRHTSTLETTKVAAS
LNIVLSVTKKNIPSVETMIQDLTGIRASTIKSFTMEIRQLANRNNPDIIM
MEAQKEAIAIACETIDD*

mRNA from alignment at tig00000860_pilon:1080643..1082646+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8996.t1 ID=Ggra8996.t1|Name=Ggra8996.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00000860_pilon:1080643..1082646+ (Gracilaria gracilis GNS1m male)
ATGAACATAAACGCAGTTTTGTTCGTCGCTCTGCTGGCGGTTTTAACCAT
TCTTCTTTCTCGTTTAAGGCACATCTTCTTTGCATCTGAGCAAAATCACA
TACCCGTACTCAACACCGGCTCTAAACGTACAACCGGGAGGTCGCCACCC
TCACCATCTTGCACCGTTACCGCGTCTGCAAATCCGACTGCGCCTGTGTC
TCGAGCTCCACGCCACCGCCCAGGGCGCAATATCTGCGTGCAGAGTGTCC
CTGGCGTCGGTGCGCTCGCACCCCACCGAACAGCCCCCGGATCGGGTTCG
CACACACCCCAAGCCCTTCCAAATGGCCCTCATGCCGGTCACCTCGCCAC
GTCCCGTCCGCGGTGCCGCTCTCCCCCGCCTTCACCGCCGCATCGCAACC
AGCGCACATCACAGCCGTTGCCCGTGCCCCAGCGCACGGCGAGGACGCCC
GAATGCCCACCCAGCGTTGCATCGCGCAAACACTCGGCTCCATCAACACC
TGAGCTCCATGCATCTTCTGCATCCAAGAAAGGCCTTTTCAATGGCTTAA
GCCGAAAGCGCTCAGGCTCCAAAGGCTTGGAGCCGTTGAAACAACAAAAT
CGTCTTCCAGCACCGCTGCTCACCTCAAAGCTTGCTAAGCGAGTCGGAAC
AAGCTCTGTGTTGGCCCAAGATAGCCAAAAGTCTTTTGCTGGGGAAAAAG
GTATTGTGCTTGCATCCCCTAAATGCAAGAAGAGCCTTTCCGATATCTTG
GGAAGTACGCATACAAGCTCCAAGGTTCGTAAGCCATTGGCGCAAGTGAC
TCGTCTGCCAGCCCCTTTGCACGCTAAAGCAAAGCTTGCCGCTCGAGCAG
GACGATATCCTTCAAGCCCCGAATCGGCGCAAAAAGGGCTGAAGTCCCTT
GCTGATGCTACGCCTGGCAGGCTTGAAAAGCATGAAACCGATGGGGGGAA
TGTAGAAAACAGGGGCGACACATCGAGAACCCAGGCCAAAGTGATCAAAG
TCTGCAGCGCCAATTCCATCGCTCAACCCCGGAAAGCAGGCGTCGAAACC
GAAAGCCATCAAAAGCCTCAGATTGAGCAAACATTCCACACGGTGCAAAA
GAGCGTCAATTTAGATGGCAAACGTCCTAGCGAAAAGAGTTGTACGGCGT
TTGAGCCTCCTGCAAAGAAACCGAGACGCAGCCATGATAGTAACTCTGTC
CGAGATTTGAAAGAGACCTCTGTAGTAGTTGGAATACTTCAATTGGACCC
AGGTCCTGTAATTTTGCGTCGCTCGAACCTCGTTTCGTTTCATTATCGTT
CCCTCGAGGAGGCTCTGGAAAATCTGCGACAAAAGTGTGAGCTTCTGGAG
CATTCCAGTTTTGTCAGCGAAAGGGCGGGGTCCTTGCTTGCACAATGTGT
GTACATTGGACTAATTGACCCAAAGGTTTTCTTCATACCCCATCCATTGC
GGCTGTGCTTTCAATCAGCATGCGTTCTACTCGCAGGGTACGCTTGCGAT
GAGAAGCGGGAAGCCACCGAGGTCTGCAACGCCTTTAGTACGAACGAGAC
GAAATATACGATCAAATTTCTCCTCCACGTGAAGGAATGTTTGTCGATAC
AAGGAGTCACACAGCATACCCTCAAACAAGTGCAGGTGATGAGAACTGGT
GAATATTCCAGGGAACTACTGGCCCGATATTGTCGACTCAGCGGCGAAAT
CTCGGAGAGAGAGCAAAATATTGCTGAGAAGGTACTGCGTTTGGTTCAAA
ACGAATTTCGTCATACGAGCACACTGGAGACAACCAAAGTGGCTGCTTCC
TTGAACATTGTGCTGAGTGTGACGAAAAAGAATATCCCTTCTGTAGAGAC
TATGATCCAAGATTTAACTGGTATCCGCGCCTCAACTATCAAGAGCTTTA
CCATGGAAATTAGGCAACTTGCCAATCGCAACAATCCAGACATCATCATG
ATGGAAGCCCAGAAAGAAGCAATCGCCATCGCATGCGAGACCATCGATGA
TTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:1080643..1082646+

>Ggra8996.t1 ID=Ggra8996.t1|Name=Ggra8996.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2004bp|location=Sequence derived from alignment at tig00000860_pilon:1080643..1082646+ (Gracilaria gracilis GNS1m male)
ATGAACATAAACGCAGTTTTGTTCGTCGCTCTGCTGGCGGTTTTAACCAT
TCTTCTTTCTCGTTTAAGGCACATCTTCTTTGCATCTGAGCAAAATCACA
TACCCGTACTCAACACCGGCTCTAAACGTACAACCGGGAGGTCGCCACCC
TCACCATCTTGCACCGTTACCGCGTCTGCAAATCCGACTGCGCCTGTGTC
TCGAGCTCCACGCCACCGCCCAGGGCGCAATATCTGCGTGCAGAGTGTCC
CTGGCGTCGGTGCGCTCGCACCCCACCGAACAGCCCCCGGATCGGGTTCG
CACACACCCCAAGCCCTTCCAAATGGCCCTCATGCCGGTCACCTCGCCAC
GTCCCGTCCGCGGTGCCGCTCTCCCCCGCCTTCACCGCCGCATCGCAACC
AGCGCACATCACAGCCGTTGCCCGTGCCCCAGCGCACGGCGAGGACGCCC
GAATGCCCACCCAGCGTTGCATCGCGCAAACACTCGGCTCCATCAACACC
TGAGCTCCATGCATCTTCTGCATCCAAGAAAGGCCTTTTCAATGGCTTAA
GCCGAAAGCGCTCAGGCTCCAAAGGCTTGGAGCCGTTGAAACAACAAAAT
CGTCTTCCAGCACCGCTGCTCACCTCAAAGCTTGCTAAGCGAGTCGGAAC
AAGCTCTGTGTTGGCCCAAGATAGCCAAAAGTCTTTTGCTGGGGAAAAAG
GTATTGTGCTTGCATCCCCTAAATGCAAGAAGAGCCTTTCCGATATCTTG
GGAAGTACGCATACAAGCTCCAAGGTTCGTAAGCCATTGGCGCAAGTGAC
TCGTCTGCCAGCCCCTTTGCACGCTAAAGCAAAGCTTGCCGCTCGAGCAG
GACGATATCCTTCAAGCCCCGAATCGGCGCAAAAAGGGCTGAAGTCCCTT
GCTGATGCTACGCCTGGCAGGCTTGAAAAGCATGAAACCGATGGGGGGAA
TGTAGAAAACAGGGGCGACACATCGAGAACCCAGGCCAAAGTGATCAAAG
TCTGCAGCGCCAATTCCATCGCTCAACCCCGGAAAGCAGGCGTCGAAACC
GAAAGCCATCAAAAGCCTCAGATTGAGCAAACATTCCACACGGTGCAAAA
GAGCGTCAATTTAGATGGCAAACGTCCTAGCGAAAAGAGTTGTACGGCGT
TTGAGCCTCCTGCAAAGAAACCGAGACGCAGCCATGATAGTAACTCTGTC
CGAGATTTGAAAGAGACCTCTGTAGTAGTTGGAATACTTCAATTGGACCC
AGGTCCTGTAATTTTGCGTCGCTCGAACCTCGTTTCGTTTCATTATCGTT
CCCTCGAGGAGGCTCTGGAAAATCTGCGACAAAAGTGTGAGCTTCTGGAG
CATTCCAGTTTTGTCAGCGAAAGGGCGGGGTCCTTGCTTGCACAATGTGT
GTACATTGGACTAATTGACCCAAAGGTTTTCTTCATACCCCATCCATTGC
GGCTGTGCTTTCAATCAGCATGCGTTCTACTCGCAGGGTACGCTTGCGAT
GAGAAGCGGGAAGCCACCGAGGTCTGCAACGCCTTTAGTACGAACGAGAC
GAAATATACGATCAAATTTCTCCTCCACGTGAAGGAATGTTTGTCGATAC
AAGGAGTCACACAGCATACCCTCAAACAAGTGCAGGTGATGAGAACTGGT
GAATATTCCAGGGAACTACTGGCCCGATATTGTCGACTCAGCGGCGAAAT
CTCGGAGAGAGAGCAAAATATTGCTGAGAAGGTACTGCGTTTGGTTCAAA
ACGAATTTCGTCATACGAGCACACTGGAGACAACCAAAGTGGCTGCTTCC
TTGAACATTGTGCTGAGTGTGACGAAAAAGAATATCCCTTCTGTAGAGAC
TATGATCCAAGATTTAACTGGTATCCGCGCCTCAACTATCAAGAGCTTTA
CCATGGAAATTAGGCAACTTGCCAATCGCAACAATCCAGACATCATCATG
ATGGAAGCCCAGAAAGAAGCAATCGCCATCGCATGCGAGACCATCGATGA
TTAG