Ggra8987.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8987.t1
Unique NameGgra8987.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1063339..1064199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8987Ggra8987Gracilaria gracilis GNS1m malegenetig00000860_pilon 1063339..1064199 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8987.t1.start1Ggra8987.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1063339..1063341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8987.t1.CDS1Ggra8987.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1063339..1064199 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8987.t1.exon1Ggra8987.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1063339..1064199 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8987.t1.stop1Ggra8987.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1064197..1064199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8987.t1Ggra8987.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1063339..1064199 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8987.t1 ID=Ggra8987.t1|Name=Ggra8987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MSLDSKILVVADSLHMISIFAVGSEAEKLTLAGIRKVNSNITALAITEGG
NTVLFVEDCAPATLKMFNTSTPANLKEVNPVHEDEVAQVVSCSISSHFIL
ASFYSKRTSTRTMALWRRAHNKIDSELTHVFTWDSERIGRGPTHLYRPIY
VTEWHTRRDHSKYYAEVAYHVDNQLVYHPEVGNEECRAPSCISMDRKPIA
LRIDQSHGRDCVYALSSDQLRIYRVDRRNKLCLTDSVVFGDGICSSAVCG
VWTGNRNRHVTVARIVNGQVLVFRAQLPSGVRFQLA*
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spliced messenger RNA

>Ggra8987.t1 ID=Ggra8987.t1|Name=Ggra8987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000860_pilon:1063339..1064199+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTAGACTCCAAAATACTCGTCGTCGCAGACTCCTTGCACATGAT
ATCCATTTTTGCCGTTGGTTCTGAGGCAGAAAAACTTACTCTGGCCGGCA
TTCGTAAAGTAAACAGCAACATAACCGCATTGGCCATCACAGAGGGGGGT
AATACAGTTCTCTTCGTGGAGGACTGTGCCCCGGCTACTCTTAAGATGTT
CAATACTTCCACTCCAGCTAATTTGAAAGAAGTTAATCCGGTTCATGAGG
ACGAAGTGGCACAGGTAGTCAGCTGTTCTATTAGCTCTCACTTCATACTG
GCCAGCTTCTATAGCAAGAGGACTTCAACCAGGACCATGGCCTTGTGGCG
TCGCGCACACAACAAGATCGACTCCGAACTAACCCACGTTTTCACTTGGG
ATTCCGAGCGTATTGGACGTGGTCCCACGCACTTGTATCGTCCGATATAC
GTTACAGAATGGCATACCCGAAGAGATCACTCAAAGTACTACGCTGAGGT
GGCGTACCACGTTGACAACCAACTCGTATACCATCCAGAAGTGGGAAATG
AAGAATGCCGTGCTCCAAGCTGCATATCGATGGATCGAAAGCCTATTGCC
CTTCGCATTGATCAAAGCCATGGAAGAGATTGTGTTTATGCTCTATCCAG
TGACCAACTTCGAATATATCGAGTGGACCGCAGAAACAAGTTGTGTTTGA
CTGACTCAGTGGTTTTCGGCGATGGCATCTGCAGCTCGGCCGTTTGTGGG
GTTTGGACGGGGAATCGGAATCGTCATGTCACCGTAGCACGCATTGTTAA
TGGACAAGTATTAGTCTTTCGTGCCCAGCTTCCAAGTGGAGTCAGATTTC
AATTAGCATAG
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protein sequence of Ggra8987.t1

>Ggra8987.t1 ID=Ggra8987.t1|Name=Ggra8987.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MSLDSKILVVADSLHMISIFAVGSEAEKLTLAGIRKVNSNITALAITEGG
NTVLFVEDCAPATLKMFNTSTPANLKEVNPVHEDEVAQVVSCSISSHFIL
ASFYSKRTSTRTMALWRRAHNKIDSELTHVFTWDSERIGRGPTHLYRPIY
VTEWHTRRDHSKYYAEVAYHVDNQLVYHPEVGNEECRAPSCISMDRKPIA
LRIDQSHGRDCVYALSSDQLRIYRVDRRNKLCLTDSVVFGDGICSSAVCG
VWTGNRNRHVTVARIVNGQVLVFRAQLPSGVRFQLA*
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mRNA from alignment at tig00000860_pilon:1063339..1064199+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8987.t1 ID=Ggra8987.t1|Name=Ggra8987.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000860_pilon:1063339..1064199+ (Gracilaria gracilis GNS1m male)
ATGTCCCTAGACTCCAAAATACTCGTCGTCGCAGACTCCTTGCACATGAT
ATCCATTTTTGCCGTTGGTTCTGAGGCAGAAAAACTTACTCTGGCCGGCA
TTCGTAAAGTAAACAGCAACATAACCGCATTGGCCATCACAGAGGGGGGT
AATACAGTTCTCTTCGTGGAGGACTGTGCCCCGGCTACTCTTAAGATGTT
CAATACTTCCACTCCAGCTAATTTGAAAGAAGTTAATCCGGTTCATGAGG
ACGAAGTGGCACAGGTAGTCAGCTGTTCTATTAGCTCTCACTTCATACTG
GCCAGCTTCTATAGCAAGAGGACTTCAACCAGGACCATGGCCTTGTGGCG
TCGCGCACACAACAAGATCGACTCCGAACTAACCCACGTTTTCACTTGGG
ATTCCGAGCGTATTGGACGTGGTCCCACGCACTTGTATCGTCCGATATAC
GTTACAGAATGGCATACCCGAAGAGATCACTCAAAGTACTACGCTGAGGT
GGCGTACCACGTTGACAACCAACTCGTATACCATCCAGAAGTGGGAAATG
AAGAATGCCGTGCTCCAAGCTGCATATCGATGGATCGAAAGCCTATTGCC
CTTCGCATTGATCAAAGCCATGGAAGAGATTGTGTTTATGCTCTATCCAG
TGACCAACTTCGAATATATCGAGTGGACCGCAGAAACAAGTTGTGTTTGA
CTGACTCAGTGGTTTTCGGCGATGGCATCTGCAGCTCGGCCGTTTGTGGG
GTTTGGACGGGGAATCGGAATCGTCATGTCACCGTAGCACGCATTGTTAA
TGGACAAGTATTAGTCTTTCGTGCCCAGCTTCCAAGTGGAGTCAGATTTC
AATTAGCATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1063339..1064199+

>Ggra8987.t1 ID=Ggra8987.t1|Name=Ggra8987.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000860_pilon:1063339..1064199+ (Gracilaria gracilis GNS1m male)
ATGTCCCTAGACTCCAAAATACTCGTCGTCGCAGACTCCTTGCACATGAT
ATCCATTTTTGCCGTTGGTTCTGAGGCAGAAAAACTTACTCTGGCCGGCA
TTCGTAAAGTAAACAGCAACATAACCGCATTGGCCATCACAGAGGGGGGT
AATACAGTTCTCTTCGTGGAGGACTGTGCCCCGGCTACTCTTAAGATGTT
CAATACTTCCACTCCAGCTAATTTGAAAGAAGTTAATCCGGTTCATGAGG
ACGAAGTGGCACAGGTAGTCAGCTGTTCTATTAGCTCTCACTTCATACTG
GCCAGCTTCTATAGCAAGAGGACTTCAACCAGGACCATGGCCTTGTGGCG
TCGCGCACACAACAAGATCGACTCCGAACTAACCCACGTTTTCACTTGGG
ATTCCGAGCGTATTGGACGTGGTCCCACGCACTTGTATCGTCCGATATAC
GTTACAGAATGGCATACCCGAAGAGATCACTCAAAGTACTACGCTGAGGT
GGCGTACCACGTTGACAACCAACTCGTATACCATCCAGAAGTGGGAAATG
AAGAATGCCGTGCTCCAAGCTGCATATCGATGGATCGAAAGCCTATTGCC
CTTCGCATTGATCAAAGCCATGGAAGAGATTGTGTTTATGCTCTATCCAG
TGACCAACTTCGAATATATCGAGTGGACCGCAGAAACAAGTTGTGTTTGA
CTGACTCAGTGGTTTTCGGCGATGGCATCTGCAGCTCGGCCGTTTGTGGG
GTTTGGACGGGGAATCGGAATCGTCATGTCACCGTAGCACGCATTGTTAA
TGGACAAGTATTAGTCTTTCGTGCCCAGCTTCCAAGTGGAGTCAGATTTC
AATTAGCATAG
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