Ggra8980.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8980.t1
Unique NameGgra8980.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1042589..1043920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005845210.1
PFAMsGCD14
Max annot lvl3041|Chlorophyta
KEGG koko:K07442
Evalue8.93e-53
EggNOG OGsCOG2519@1|root,KOG2915@2759|Eukaryota,37HZ2@33090|Viridiplantae,34HD5@3041|Chlorophyta
EC2.1.1.219,2.1.1.220
DescriptiontRNA (adenine(58)-N(1))-methyltransferase
COG categoryH
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8980Ggra8980Gracilaria gracilis GNS1m malegenetig00000860_pilon 1042589..1043920 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8980.t1.start1Ggra8980.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1042589..1042591 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8980.t1.CDS1Ggra8980.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1042589..1043920 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8980.t1.exon1Ggra8980.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1042589..1043920 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8980.t1.stop1Ggra8980.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1043918..1043920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8980.t1Ggra8980.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1042589..1043920 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8980.t1 ID=Ggra8980.t1|Name=Ggra8980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MLRARAEQCGAVDAAAASTATRGGGAPVADGELVVVHEKYTSLSAVALRR
GAFLDNRYGRFAHDHALARGLGTRWSAVSRNPRRCAGFVHALRPNAALMA
YAMLHRTQIVYPHDAFVVAAFLQLRPGAVVVECGTGSGSAAAAFAAAVAP
TGRVLSFEFHRERADAARAHFDTLGIGHIVSVTSGVDVVKHGFVGVADGV
ADALFLDVPAPYAVVADARRVLKRNGMLCAFSPCVEQVARTCDQLRRLRF
YALRTVTAPVRTFETRASARAAPGFERAPRPRKRSRRARDGATEPSIAMR
VAKRRRAASDDGAQQRAAADAAADAARETALDSDTSRASRASALDQRLSA
GAERLAVAALNERRHVGRVLRPAVPLHTRPFSTMKSHTSFLTFATKARDT
APRGGGGGGGGGGGGGGGGGDAAARASEREVHAPMHARRCLVM*
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spliced messenger RNA

>Ggra8980.t1 ID=Ggra8980.t1|Name=Ggra8980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000860_pilon:1042589..1043920+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCGCGCGCGCGGAGCAGTgcggcgccgtcgacgcggcggccgc
gtcgacggcgacgcgcggcggcggcgcgcccgtggcggacggcgAGCTCG
TGGTGGTGCACGAGAAGTACACGTCGCTGAGCGCCGTCGCGCTGCGGCGC
GGCGCCTTCCTGGACAACCGCTACGGGCGCTTTGCGCACGACCACGCGCT
GGCGCGCGGGCTCGGCACGCGCTGGTCCGCCGTGTCGCGCAACCCGCGCC
GCTGCGCCGGCTTCGTGCACGCGCTGCGCCCCAATGCCGCGCTCATGGCG
TACGCCATGCTGCACCGCACGCAGATCGTGTACccgcacgacgcctttgt
cgtcgccgccttcctgcagctgcgccccggcgccgtcgtcgtggagtgcg
gcaccggctcgggctccgccgccgccgccttcgccgccgccgtcgcgccC
ACTGGCCGCGTGCTCAGCTTCGAGTTTCATCGCGAGCGCGCCGACGCCGC
GCGCGCCCACTTTGACACGCTGGGAATCGGCCACATCGTGTCCGTCACCA
GCGGCGTGGACGTCGTCAAGCACGGTTTCGTGGGCGTGGCCGACGGCGTG
GCCGACGCGCTGTTTCTGGAcgtgcccgcgccgtacgccgtggtggccga
cgcgcgccgcgtgcTCAAGCGCAACGGAATGCTGTGTGCCTTCTCGCCGT
GCGTGGAGCAGGTCGCGCGCACGTGCGATCAATTACGACGCCTTCGCTTC
TATGCGCTGCGGACTGTCACCGCGCCCGTGCGCACCTTCGAGACGCGCGC
CAGCGCGCGCGCCGCGCCGGGCTTTGAGCGCGCGCCGCGGCCGCGCAAGC
GCTCGCGCCGCGCGCGCGACGGCGCCACCGAGCCGTCCATTGCCATGCGC
GTGGCGAAGcgtcgccgcgccgcgtccgacgacggcgcgcagcagcgcgc
cgccgccgacgccgccgcagacgccgctcgcGAGACTGCGCTTGACAGTG
ATACGTCGCGTGCGTCGCGTGCGAGCGCGCTTGATCAGAGACTGTCTGCG
GGCGCGGAGCGCTTGGCGGTGGCCGCCTTGAATGAGCGCCGCCATGTGGG
GCGCGTGTTGCGCCCGGCTGTGCCTTTGCATACGCGCCCGTTCTCCACCA
TGAAGTCGCACACTAGCTTTCTCACCTTCGCTACCAAGGCGCGAGACACC
GCGCCGCgcggcggcggcggtggcggcggcggcggtggcggcggcggcgg
cggcggcggTGACGCCGCTGCGCGCGCCTCTGAGCGCGAGGTGCACGCAC
CAATGCACGCGCGCCGATGTTTGGTGATGTGA
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protein sequence of Ggra8980.t1

>Ggra8980.t1 ID=Ggra8980.t1|Name=Ggra8980.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MLRARAEQCGAVDAAAASTATRGGGAPVADGELVVVHEKYTSLSAVALRR
GAFLDNRYGRFAHDHALARGLGTRWSAVSRNPRRCAGFVHALRPNAALMA
YAMLHRTQIVYPHDAFVVAAFLQLRPGAVVVECGTGSGSAAAAFAAAVAP
TGRVLSFEFHRERADAARAHFDTLGIGHIVSVTSGVDVVKHGFVGVADGV
ADALFLDVPAPYAVVADARRVLKRNGMLCAFSPCVEQVARTCDQLRRLRF
YALRTVTAPVRTFETRASARAAPGFERAPRPRKRSRRARDGATEPSIAMR
VAKRRRAASDDGAQQRAAADAAADAARETALDSDTSRASRASALDQRLSA
GAERLAVAALNERRHVGRVLRPAVPLHTRPFSTMKSHTSFLTFATKARDT
APRGGGGGGGGGGGGGGGGGDAAARASEREVHAPMHARRCLVM*
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mRNA from alignment at tig00000860_pilon:1042589..1043920+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8980.t1 ID=Ggra8980.t1|Name=Ggra8980.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000860_pilon:1042589..1043920+ (Gracilaria gracilis GNS1m male)
ATGCTACGCGCGCGCGCGGAGCAGTgcggcgccgtcgacgcggcggccgc
gtcgacggcgacgcgcggcggcggcgcgcccgtggcggacggcgAGCTCG
TGGTGGTGCACGAGAAGTACACGTCGCTGAGCGCCGTCGCGCTGCGGCGC
GGCGCCTTCCTGGACAACCGCTACGGGCGCTTTGCGCACGACCACGCGCT
GGCGCGCGGGCTCGGCACGCGCTGGTCCGCCGTGTCGCGCAACCCGCGCC
GCTGCGCCGGCTTCGTGCACGCGCTGCGCCCCAATGCCGCGCTCATGGCG
TACGCCATGCTGCACCGCACGCAGATCGTGTACccgcacgacgcctttgt
cgtcgccgccttcctgcagctgcgccccggcgccgtcgtcgtggagtgcg
gcaccggctcgggctccgccgccgccgccttcgccgccgccgtcgcgccC
ACTGGCCGCGTGCTCAGCTTCGAGTTTCATCGCGAGCGCGCCGACGCCGC
GCGCGCCCACTTTGACACGCTGGGAATCGGCCACATCGTGTCCGTCACCA
GCGGCGTGGACGTCGTCAAGCACGGTTTCGTGGGCGTGGCCGACGGCGTG
GCCGACGCGCTGTTTCTGGAcgtgcccgcgccgtacgccgtggtggccga
cgcgcgccgcgtgcTCAAGCGCAACGGAATGCTGTGTGCCTTCTCGCCGT
GCGTGGAGCAGGTCGCGCGCACGTGCGATCAATTACGACGCCTTCGCTTC
TATGCGCTGCGGACTGTCACCGCGCCCGTGCGCACCTTCGAGACGCGCGC
CAGCGCGCGCGCCGCGCCGGGCTTTGAGCGCGCGCCGCGGCCGCGCAAGC
GCTCGCGCCGCGCGCGCGACGGCGCCACCGAGCCGTCCATTGCCATGCGC
GTGGCGAAGcgtcgccgcgccgcgtccgacgacggcgcgcagcagcgcgc
cgccgccgacgccgccgcagacgccgctcgcGAGACTGCGCTTGACAGTG
ATACGTCGCGTGCGTCGCGTGCGAGCGCGCTTGATCAGAGACTGTCTGCG
GGCGCGGAGCGCTTGGCGGTGGCCGCCTTGAATGAGCGCCGCCATGTGGG
GCGCGTGTTGCGCCCGGCTGTGCCTTTGCATACGCGCCCGTTCTCCACCA
TGAAGTCGCACACTAGCTTTCTCACCTTCGCTACCAAGGCGCGAGACACC
GCGCCGCgcggcggcggcggtggcggcggcggcggtggcggcggcggcgg
cggcggcggTGACGCCGCTGCGCGCGCCTCTGAGCGCGAGGTGCACGCAC
CAATGCACGCGCGCCGATGTTTGGTGATGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1042589..1043920+

>Ggra8980.t1 ID=Ggra8980.t1|Name=Ggra8980.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000860_pilon:1042589..1043920+ (Gracilaria gracilis GNS1m male)
ATGCTACGCGCGCGCGCGGAGCAGTgcggcgccgtcgacgcggcggccgc
gtcgacggcgacgcgcggcggcggcgcgcccgtggcggacggcgAGCTCG
TGGTGGTGCACGAGAAGTACACGTCGCTGAGCGCCGTCGCGCTGCGGCGC
GGCGCCTTCCTGGACAACCGCTACGGGCGCTTTGCGCACGACCACGCGCT
GGCGCGCGGGCTCGGCACGCGCTGGTCCGCCGTGTCGCGCAACCCGCGCC
GCTGCGCCGGCTTCGTGCACGCGCTGCGCCCCAATGCCGCGCTCATGGCG
TACGCCATGCTGCACCGCACGCAGATCGTGTACccgcacgacgcctttgt
cgtcgccgccttcctgcagctgcgccccggcgccgtcgtcgtggagtgcg
gcaccggctcgggctccgccgccgccgccttcgccgccgccgtcgcgccC
ACTGGCCGCGTGCTCAGCTTCGAGTTTCATCGCGAGCGCGCCGACGCCGC
GCGCGCCCACTTTGACACGCTGGGAATCGGCCACATCGTGTCCGTCACCA
GCGGCGTGGACGTCGTCAAGCACGGTTTCGTGGGCGTGGCCGACGGCGTG
GCCGACGCGCTGTTTCTGGAcgtgcccgcgccgtacgccgtggtggccga
cgcgcgccgcgtgcTCAAGCGCAACGGAATGCTGTGTGCCTTCTCGCCGT
GCGTGGAGCAGGTCGCGCGCACGTGCGATCAATTACGACGCCTTCGCTTC
TATGCGCTGCGGACTGTCACCGCGCCCGTGCGCACCTTCGAGACGCGCGC
CAGCGCGCGCGCCGCGCCGGGCTTTGAGCGCGCGCCGCGGCCGCGCAAGC
GCTCGCGCCGCGCGCGCGACGGCGCCACCGAGCCGTCCATTGCCATGCGC
GTGGCGAAGcgtcgccgcgccgcgtccgacgacggcgcgcagcagcgcgc
cgccgccgacgccgccgcagacgccgctcgcGAGACTGCGCTTGACAGTG
ATACGTCGCGTGCGTCGCGTGCGAGCGCGCTTGATCAGAGACTGTCTGCG
GGCGCGGAGCGCTTGGCGGTGGCCGCCTTGAATGAGCGCCGCCATGTGGG
GCGCGTGTTGCGCCCGGCTGTGCCTTTGCATACGCGCCCGTTCTCCACCA
TGAAGTCGCACACTAGCTTTCTCACCTTCGCTACCAAGGCGCGAGACACC
GCGCCGCgcggcggcggcggtggcggcggcggcggtggcggcggcggcgg
cggcggcggTGACGCCGCTGCGCGCGCCTCTGAGCGCGAGGTGCACGCAC
CAATGCACGCGCGCCGATGTTTGGTGATGTGA
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