Ggra8979.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8979.t1
Unique NameGgra8979.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1040728..1042284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX31485
PFAMsCys_Met_Meta_PP
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00056,RC00069,RC00420,RC02848,RC02866
KEGG koko:K01739
KEGG ReactionR00999,R01288,R02508,R03217,R03260,R04944,R04945,R04946
KEGG Pathwayko00270,ko00450,ko00920,ko01100,ko01110,ko01130,ko01230,map00270,map00450,map00920,map01100,map01110,map01130,map01230
KEGG ModuleM00017
Evalue7.96e-184
EggNOG OGsCOG0626@1|root,KOG0053@2759|Eukaryota
EC2.5.1.48
Descriptioncystathionine gamma-synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8979Ggra8979Gracilaria gracilis GNS1m malegenetig00000860_pilon 1040728..1042284 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8979.t1.stop1Ggra8979.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1040728..1040730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8979.t1.CDS1Ggra8979.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1040728..1042284 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8979.t1.exon1Ggra8979.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1040728..1042284 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8979.t1.start1Ggra8979.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1042282..1042284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8979.t1Ggra8979.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1040728..1042284 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8979.t1 ID=Ggra8979.t1|Name=Ggra8979.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MTLPAFSFLVATPARSDRGWTRGMPPPCSSRRVVTSRPPRFRATLSESTK
PAAASSSSSSSSSSSSSSSSAPEDDSITVAAYVSHPPASHPLDRLDHLFD
DTDPYRPRSLVVANGREQTRSVHGGERLRGGKKTKAILDAVQTPIVQSAT
FTFRSTRDCIDYNRGSYESFEYGRYGNPTTRSVEEKIMALEHAEDCLLSS
CGMNAVTTMLLALVPQNGHVVVTTDCYRRTRQFVDSVLPKMGISSTVLDP
ADLSSLQHILSTKGAHLYFSESPTNPMIRVVDVPEIARMCRAHGAISVFD
TTFATPINLRPIEFGADLVLHSGTKYLAGHHDVLCGALAGRADLVAQVRK
LHGVLGGVIDPHAAFLVNRGLKTLGVRMEAHNRNASSIARFLSTHPKVGK
VHFPTLESHADFGTASRLFEKGFGGVLSFELKGDGNQWSRDTFEATGRFV
DALKIAYIGPSMGGCETMVEQVCIMGYFDQPLRERKRLGINNGLVRLACG
IEDVNDLVDDVEAALLAV*
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spliced messenger RNA

>Ggra8979.t1 ID=Ggra8979.t1|Name=Ggra8979.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000860_pilon:1040728..1042284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTTCCCGCCTTCTCGTTCCTCGTCGCCACCCCTGCCCGCAGCGA
CCGCGGCTGGACCCGCGGTATGCCCCCGCCATGCTCGTCTCGTCGCGTGG
TTACATCGCGTCCGCCTCGTTTTCGCGCCACGCTCAGCGAGTCCACCAAG
CCCGCCGCCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGTCCGCGCCGGAAGACGACTCCATCACCGTGGCAGCCTACGTGT
CGCACCCGCCCGCCTCGCACCCTCTCGATCGTCTCGATCACTTGTTCGAC
GACACCGACCCGTACCGTCCGCGCAGCCTCGTCGTCGCCAACGGCCGAGA
GCAGACCCGCTCCGTGCACGGCGGCGAGCGCCTTCGTGGCGGCAAGAAGA
CAAAGGCCATTTTGGACGCCGTGCAGACGCCTATTGTACAGTCGGCCACT
TTTACCTTTCGCTCCACACGCGACTGCATCGACTATAACCGCGGCTCGTA
CGAGTCGTTTGAGTACGGTCGCTACGGAAATCCCACCACGCGCAGCGTCG
AGGAGAAGATCATGGCGCTAGAACACGCTGAAGATTGTCTGCTGTCGTCG
TGTGGCATGAATGCCGTCACTACCATGCTGCTCGCCCTCGTGCCTCAAAA
CGGACATGTGGTCGTCACCACCGACTGCTACCGTCGCACCCGTCAGTTCG
TGGACTCTGTGCTGCCCAAGATGGGTATCTCAAGCACCGTGTTGGACCCG
GCTGATCTAAGCTCGTTGCAGCACATTTTGAGTACCAAAGGCGCGCATCT
GTACTTTTCAGAGAGCCCTACAAACCCCATGATCCGCGTGGTGGACGTGC
CGGAGATCGCGCGTATGTGCCGTGCACATGGCGCTATCTCCGTGTTCGAT
ACCACCTTCGCCACGCCCATCAACCTGCGCCCCATCGAATTCGGCGCCGA
CCTGGTGCTGCACTCCGGCACCAAGTACCTGGCCGGCCATCACGACGTGC
TGTGCGGCGCACTTGCCGGACGCGCCGATCTGGTGGCGCAGGTGCGCAAG
CTGCACGGCGTGTTAGGCGGTGTGATCGACCCGCATGCGGCGTTCCTTGT
GAACCGTGGACTCAAGACGCTGGGCGTGCGCATGGAGGCTCACAACCGCA
ACGCAAGCTCCATCGCGCGCTTCCTCAGCACGCACCCCAAGGTGGGCAAG
GTGCACTTCCCGACGCTGGAGTCGCACGCGGACTTTGGTACCGCTAGCAG
GCTGTTCGAGAAGGGCTTTGGGGGGGTGCTGAGCTTCGAGCTCAAGGGCG
ATGGCAACCAGTGGAGCCGCGACACGTTCGAGGCTACTGGCCGCTTTGTG
GACGCGCTGAAGATCGCGTACATCGGACCGAGCATGGGCGGGTGTGAGAC
GATGGTGGAACAGGTGTGTATCATGGGCTACTTTGACCAGCCGCTGAGGG
AGAGGAAGCGACTGGGCATCAATAACGGGCTGGTGCGTCTGGCGTGTGGC
ATTGAGGATGTCAACGACCTAGTGGATGATGTCGAGGCCGCGCTGCTCGC
CGTGTGA
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protein sequence of Ggra8979.t1

>Ggra8979.t1 ID=Ggra8979.t1|Name=Ggra8979.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MTLPAFSFLVATPARSDRGWTRGMPPPCSSRRVVTSRPPRFRATLSESTK
PAAASSSSSSSSSSSSSSSSAPEDDSITVAAYVSHPPASHPLDRLDHLFD
DTDPYRPRSLVVANGREQTRSVHGGERLRGGKKTKAILDAVQTPIVQSAT
FTFRSTRDCIDYNRGSYESFEYGRYGNPTTRSVEEKIMALEHAEDCLLSS
CGMNAVTTMLLALVPQNGHVVVTTDCYRRTRQFVDSVLPKMGISSTVLDP
ADLSSLQHILSTKGAHLYFSESPTNPMIRVVDVPEIARMCRAHGAISVFD
TTFATPINLRPIEFGADLVLHSGTKYLAGHHDVLCGALAGRADLVAQVRK
LHGVLGGVIDPHAAFLVNRGLKTLGVRMEAHNRNASSIARFLSTHPKVGK
VHFPTLESHADFGTASRLFEKGFGGVLSFELKGDGNQWSRDTFEATGRFV
DALKIAYIGPSMGGCETMVEQVCIMGYFDQPLRERKRLGINNGLVRLACG
IEDVNDLVDDVEAALLAV*
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mRNA from alignment at tig00000860_pilon:1040728..1042284-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8979.t1 ID=Ggra8979.t1|Name=Ggra8979.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000860_pilon:1040728..1042284- (Gracilaria gracilis GNS1m male)
ATGACTCTTCCCGCCTTCTCGTTCCTCGTCGCCACCCCTGCCCGCAGCGA
CCGCGGCTGGACCCGCGGTATGCCCCCGCCATGCTCGTCTCGTCGCGTGG
TTACATCGCGTCCGCCTCGTTTTCGCGCCACGCTCAGCGAGTCCACCAAG
CCCGCCGCCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGTCCGCGCCGGAAGACGACTCCATCACCGTGGCAGCCTACGTGT
CGCACCCGCCCGCCTCGCACCCTCTCGATCGTCTCGATCACTTGTTCGAC
GACACCGACCCGTACCGTCCGCGCAGCCTCGTCGTCGCCAACGGCCGAGA
GCAGACCCGCTCCGTGCACGGCGGCGAGCGCCTTCGTGGCGGCAAGAAGA
CAAAGGCCATTTTGGACGCCGTGCAGACGCCTATTGTACAGTCGGCCACT
TTTACCTTTCGCTCCACACGCGACTGCATCGACTATAACCGCGGCTCGTA
CGAGTCGTTTGAGTACGGTCGCTACGGAAATCCCACCACGCGCAGCGTCG
AGGAGAAGATCATGGCGCTAGAACACGCTGAAGATTGTCTGCTGTCGTCG
TGTGGCATGAATGCCGTCACTACCATGCTGCTCGCCCTCGTGCCTCAAAA
CGGACATGTGGTCGTCACCACCGACTGCTACCGTCGCACCCGTCAGTTCG
TGGACTCTGTGCTGCCCAAGATGGGTATCTCAAGCACCGTGTTGGACCCG
GCTGATCTAAGCTCGTTGCAGCACATTTTGAGTACCAAAGGCGCGCATCT
GTACTTTTCAGAGAGCCCTACAAACCCCATGATCCGCGTGGTGGACGTGC
CGGAGATCGCGCGTATGTGCCGTGCACATGGCGCTATCTCCGTGTTCGAT
ACCACCTTCGCCACGCCCATCAACCTGCGCCCCATCGAATTCGGCGCCGA
CCTGGTGCTGCACTCCGGCACCAAGTACCTGGCCGGCCATCACGACGTGC
TGTGCGGCGCACTTGCCGGACGCGCCGATCTGGTGGCGCAGGTGCGCAAG
CTGCACGGCGTGTTAGGCGGTGTGATCGACCCGCATGCGGCGTTCCTTGT
GAACCGTGGACTCAAGACGCTGGGCGTGCGCATGGAGGCTCACAACCGCA
ACGCAAGCTCCATCGCGCGCTTCCTCAGCACGCACCCCAAGGTGGGCAAG
GTGCACTTCCCGACGCTGGAGTCGCACGCGGACTTTGGTACCGCTAGCAG
GCTGTTCGAGAAGGGCTTTGGGGGGGTGCTGAGCTTCGAGCTCAAGGGCG
ATGGCAACCAGTGGAGCCGCGACACGTTCGAGGCTACTGGCCGCTTTGTG
GACGCGCTGAAGATCGCGTACATCGGACCGAGCATGGGCGGGTGTGAGAC
GATGGTGGAACAGGTGTGTATCATGGGCTACTTTGACCAGCCGCTGAGGG
AGAGGAAGCGACTGGGCATCAATAACGGGCTGGTGCGTCTGGCGTGTGGC
ATTGAGGATGTCAACGACCTAGTGGATGATGTCGAGGCCGCGCTGCTCGC
CGTGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:1040728..1042284-

>Ggra8979.t1 ID=Ggra8979.t1|Name=Ggra8979.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000860_pilon:1040728..1042284- (Gracilaria gracilis GNS1m male)
ATGACTCTTCCCGCCTTCTCGTTCCTCGTCGCCACCCCTGCCCGCAGCGA
CCGCGGCTGGACCCGCGGTATGCCCCCGCCATGCTCGTCTCGTCGCGTGG
TTACATCGCGTCCGCCTCGTTTTCGCGCCACGCTCAGCGAGTCCACCAAG
CCCGCCGCCGCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCGTCGTCCGCGCCGGAAGACGACTCCATCACCGTGGCAGCCTACGTGT
CGCACCCGCCCGCCTCGCACCCTCTCGATCGTCTCGATCACTTGTTCGAC
GACACCGACCCGTACCGTCCGCGCAGCCTCGTCGTCGCCAACGGCCGAGA
GCAGACCCGCTCCGTGCACGGCGGCGAGCGCCTTCGTGGCGGCAAGAAGA
CAAAGGCCATTTTGGACGCCGTGCAGACGCCTATTGTACAGTCGGCCACT
TTTACCTTTCGCTCCACACGCGACTGCATCGACTATAACCGCGGCTCGTA
CGAGTCGTTTGAGTACGGTCGCTACGGAAATCCCACCACGCGCAGCGTCG
AGGAGAAGATCATGGCGCTAGAACACGCTGAAGATTGTCTGCTGTCGTCG
TGTGGCATGAATGCCGTCACTACCATGCTGCTCGCCCTCGTGCCTCAAAA
CGGACATGTGGTCGTCACCACCGACTGCTACCGTCGCACCCGTCAGTTCG
TGGACTCTGTGCTGCCCAAGATGGGTATCTCAAGCACCGTGTTGGACCCG
GCTGATCTAAGCTCGTTGCAGCACATTTTGAGTACCAAAGGCGCGCATCT
GTACTTTTCAGAGAGCCCTACAAACCCCATGATCCGCGTGGTGGACGTGC
CGGAGATCGCGCGTATGTGCCGTGCACATGGCGCTATCTCCGTGTTCGAT
ACCACCTTCGCCACGCCCATCAACCTGCGCCCCATCGAATTCGGCGCCGA
CCTGGTGCTGCACTCCGGCACCAAGTACCTGGCCGGCCATCACGACGTGC
TGTGCGGCGCACTTGCCGGACGCGCCGATCTGGTGGCGCAGGTGCGCAAG
CTGCACGGCGTGTTAGGCGGTGTGATCGACCCGCATGCGGCGTTCCTTGT
GAACCGTGGACTCAAGACGCTGGGCGTGCGCATGGAGGCTCACAACCGCA
ACGCAAGCTCCATCGCGCGCTTCCTCAGCACGCACCCCAAGGTGGGCAAG
GTGCACTTCCCGACGCTGGAGTCGCACGCGGACTTTGGTACCGCTAGCAG
GCTGTTCGAGAAGGGCTTTGGGGGGGTGCTGAGCTTCGAGCTCAAGGGCG
ATGGCAACCAGTGGAGCCGCGACACGTTCGAGGCTACTGGCCGCTTTGTG
GACGCGCTGAAGATCGCGTACATCGGACCGAGCATGGGCGGGTGTGAGAC
GATGGTGGAACAGGTGTGTATCATGGGCTACTTTGACCAGCCGCTGAGGG
AGAGGAAGCGACTGGGCATCAATAACGGGCTGGTGCGTCTGGCGTGTGGC
ATTGAGGATGTCAACGACCTAGTGGATGATGTCGAGGCCGCGCTGCTCGC
CGTGTGA
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