Ggra8977.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8977.t1
Unique NameGgra8977.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length573
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1035628..1037346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1170562.Cal6303_5676
PFAMsPatatin
Max annot lvl2|Bacteria
KEGG koko:K07001
Evalue6.2e-57
EggNOG OGsCOG1752@1|root,COG1752@2|Bacteria
DescriptionEsterase of the alpha-beta hydrolase superfamily
COG categoryM
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8977Ggra8977Gracilaria gracilis GNS1m malegenetig00000860_pilon 1035628..1037346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8977.t1.stop1Ggra8977.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1035628..1035630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8977.t1.CDS1Ggra8977.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1035628..1037346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8977.t1.exon1Ggra8977.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1035628..1037346 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8977.t1.start1Ggra8977.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1037344..1037346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8977.t1Ggra8977.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1035628..1037346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8977.t1 ID=Ggra8977.t1|Name=Ggra8977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp
MVVADTTTPSYKLGLCLAGAATGGAYSAGVLDFLLEAVNEWQALKNAGDP
SVPPWDVNLKEVIGTSAGGITATLAIACLNIPHEPLPHDYKLGDPSPKNN
PLFQTWVKEMNADRLLSLDDLDQIQEDGKAHVRSILNAEFMSTTAPKMIQ
ERNATQTMPAYARGLCLSLTTTNMRGVPYSLNNFSSINPNEAFYMRQHAD
YCQYAVTTDPDSIPAKVKNSKHILDISQGPTAPGWTSAIDASKATSAFPA
GFATVRIKTPRSHYENRMDMPPCWKNHIEMRGGAGSGESPEEAEEYTYCA
VDGGTVNNEPFGLLERFLSEDEGKCLEMKGKDSWGSIILIDPFPSVWDDP
SLTQDGMSLLPMLSALISSIREQAMFKREEIEKAVDDTCMAKFMIRPHRE
VKEGEAFSIATATMGSFGGILDEKIRLHDFQLGRANCKDFLEKVFCIARE
EALENSFFNRHAEFLIEERIPIIPVVGKAAEPLPVPEWPTYTDSEREQLV
ADLLNKFNRRIEKVVKIILYNFGVIKPTRFYDIQKKIVNIAGRFVHARLV
AEAMERIETGIRTAMEVFRKPS*
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spliced messenger RNA

>Ggra8977.t1 ID=Ggra8977.t1|Name=Ggra8977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000860_pilon:1035628..1037346- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTTGCCGACACCACAACCCCTAGCTACAAACTTGGCCTCTGTCT
TGCCGGCGCAGCAACGGGCGGAGCCTATTCAGCCGGTGTTCTTGACTTCC
TTTTAGAGGCAGTAAATGAATGGCAAGCTCTCAAAAATGCGGGCGATCCA
TCTGTTCCACCGTGGGATGTAAACCTCAAAGAGGTCATTGGAACTTCGGC
TGGTGGAATCACGGCAACTCTTGCCATAGCTTGTCTCAACATTCCACATG
AACCCCTTCCTCATGACTACAAGCTTGGTGACCCATCGCCGAAGAACAAC
CCGCTCTTTCAAACATGGGTCAAAGAAATGAACGCCGATAGACTCCTGAG
CCTCGATGATCTCGACCAAATCCAGGAAGATGGCAAGGCTCACGTTCGTT
CGATTCTTAATGCTGAGTTCATGTCGACGACCGCCCCCAAAATGATCCAG
GAGAGGAATGCCACACAGACAATGCCAGCTTATGCGAGAGGTCTTTGTCT
ATCTCTTACTACCACCAATATGAGAGGCGTTCCGTACTCCCTCAATAACT
TCAGCTCCATCAATCCCAATGAAGCCTTCTATATGCGCCAGCATGCGGAC
TATTGCCAATACGCTGTTACTACCGATCCAGACTCCATCCCGGCCAAGGT
CAAAAACAGCAAGCATATTCTGGATATATCGCAGGGACCAACTGCTCCAG
GTTGGACCAGCGCTATCGACGCCTCAAAGGCTACGTCCGCCTTTCCTGCC
GGCTTTGCTACTGTGCGCATTAAAACACCTCGTTCTCACTATGAGAATCG
AATGGATATGCCTCCGTGTTGGAAAAACCACATCGAGATGAGAGGAGGAG
CCGGGTCTGGAGAGTCTCCCGAAGAAGCGGAAGAGTATACATACTGCGCC
GTTGACGGTGGAACGGTGAACAATGAGCCTTTTGGCCTGCTTGAGAGATT
CTTGTCAGAGGATGAGGGCAAGTGTTTGGAGATGAAGGGCAAAGACAGTT
GGGGTTCCATTATCCTTATCGATCCGTTTCCCAGTGTTTGGGACGACCCT
AGTTTGACTCAAGATGGAATGTCACTGCTACCTATGCTGTCTGCACTCAT
CTCCTCGATACGAGAGCAGGCCATGTTTAAGAGGGAAGAAATCGAGAAGG
CCGTTGACGACACCTGCATGGCAAAGTTCATGATTCGTCCACATAGGGAA
GTGAAGGAAGGAGAAGCATTCTCCATTGCCACCGCTACCATGGGAAGCTT
CGGTGGCATCTTAGACGAGAAGATTCGCCTGCATGACTTTCAACTTGGTC
GAGCTAATTGCAAAGACTTTTTGGAGAAGGTCTTCTGTATCGCTCGTGAG
GAGGCTTTAGAGAACAGCTTCTTCAACAGGCACGCTGAATTTCTGATCGA
GGAACGCATTCCCATTATACCAGTCGTGGGTAAGGCAGCCGAACCTCTTC
CTGTTCCAGAATGGCCCACGTACACCGATTCTGAAAGGGAGCAGCTCGTG
GCAGACTTATTGAACAAGTTCAACAGACGCATAGAGAAGGTTGTGAAAAT
TATCCTTTATAACTTTGGTGTGATCAAGCCTACGCGCTTCTATGACATCC
AAAAGAAGATCGTGAATATTGCAGGAAGGTTTGTCCATGCTAGGCTTGTA
GCTGAGGCGATGGAAAGAATTGAAACAGGAATCAGAACAGCCATGGAAGT
ATTTCGTAAGCCATCGTAG
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protein sequence of Ggra8977.t1

>Ggra8977.t1 ID=Ggra8977.t1|Name=Ggra8977.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=573bp
MVVADTTTPSYKLGLCLAGAATGGAYSAGVLDFLLEAVNEWQALKNAGDP
SVPPWDVNLKEVIGTSAGGITATLAIACLNIPHEPLPHDYKLGDPSPKNN
PLFQTWVKEMNADRLLSLDDLDQIQEDGKAHVRSILNAEFMSTTAPKMIQ
ERNATQTMPAYARGLCLSLTTTNMRGVPYSLNNFSSINPNEAFYMRQHAD
YCQYAVTTDPDSIPAKVKNSKHILDISQGPTAPGWTSAIDASKATSAFPA
GFATVRIKTPRSHYENRMDMPPCWKNHIEMRGGAGSGESPEEAEEYTYCA
VDGGTVNNEPFGLLERFLSEDEGKCLEMKGKDSWGSIILIDPFPSVWDDP
SLTQDGMSLLPMLSALISSIREQAMFKREEIEKAVDDTCMAKFMIRPHRE
VKEGEAFSIATATMGSFGGILDEKIRLHDFQLGRANCKDFLEKVFCIARE
EALENSFFNRHAEFLIEERIPIIPVVGKAAEPLPVPEWPTYTDSEREQLV
ADLLNKFNRRIEKVVKIILYNFGVIKPTRFYDIQKKIVNIAGRFVHARLV
AEAMERIETGIRTAMEVFRKPS*
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mRNA from alignment at tig00000860_pilon:1035628..1037346-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8977.t1 ID=Ggra8977.t1|Name=Ggra8977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000860_pilon:1035628..1037346- (Gracilaria gracilis GNS1m male)
ATGGTCGTTGCCGACACCACAACCCCTAGCTACAAACTTGGCCTCTGTCT
TGCCGGCGCAGCAACGGGCGGAGCCTATTCAGCCGGTGTTCTTGACTTCC
TTTTAGAGGCAGTAAATGAATGGCAAGCTCTCAAAAATGCGGGCGATCCA
TCTGTTCCACCGTGGGATGTAAACCTCAAAGAGGTCATTGGAACTTCGGC
TGGTGGAATCACGGCAACTCTTGCCATAGCTTGTCTCAACATTCCACATG
AACCCCTTCCTCATGACTACAAGCTTGGTGACCCATCGCCGAAGAACAAC
CCGCTCTTTCAAACATGGGTCAAAGAAATGAACGCCGATAGACTCCTGAG
CCTCGATGATCTCGACCAAATCCAGGAAGATGGCAAGGCTCACGTTCGTT
CGATTCTTAATGCTGAGTTCATGTCGACGACCGCCCCCAAAATGATCCAG
GAGAGGAATGCCACACAGACAATGCCAGCTTATGCGAGAGGTCTTTGTCT
ATCTCTTACTACCACCAATATGAGAGGCGTTCCGTACTCCCTCAATAACT
TCAGCTCCATCAATCCCAATGAAGCCTTCTATATGCGCCAGCATGCGGAC
TATTGCCAATACGCTGTTACTACCGATCCAGACTCCATCCCGGCCAAGGT
CAAAAACAGCAAGCATATTCTGGATATATCGCAGGGACCAACTGCTCCAG
GTTGGACCAGCGCTATCGACGCCTCAAAGGCTACGTCCGCCTTTCCTGCC
GGCTTTGCTACTGTGCGCATTAAAACACCTCGTTCTCACTATGAGAATCG
AATGGATATGCCTCCGTGTTGGAAAAACCACATCGAGATGAGAGGAGGAG
CCGGGTCTGGAGAGTCTCCCGAAGAAGCGGAAGAGTATACATACTGCGCC
GTTGACGGTGGAACGGTGAACAATGAGCCTTTTGGCCTGCTTGAGAGATT
CTTGTCAGAGGATGAGGGCAAGTGTTTGGAGATGAAGGGCAAAGACAGTT
GGGGTTCCATTATCCTTATCGATCCGTTTCCCAGTGTTTGGGACGACCCT
AGTTTGACTCAAGATGGAATGTCACTGCTACCTATGCTGTCTGCACTCAT
CTCCTCGATACGAGAGCAGGCCATGTTTAAGAGGGAAGAAATCGAGAAGG
CCGTTGACGACACCTGCATGGCAAAGTTCATGATTCGTCCACATAGGGAA
GTGAAGGAAGGAGAAGCATTCTCCATTGCCACCGCTACCATGGGAAGCTT
CGGTGGCATCTTAGACGAGAAGATTCGCCTGCATGACTTTCAACTTGGTC
GAGCTAATTGCAAAGACTTTTTGGAGAAGGTCTTCTGTATCGCTCGTGAG
GAGGCTTTAGAGAACAGCTTCTTCAACAGGCACGCTGAATTTCTGATCGA
GGAACGCATTCCCATTATACCAGTCGTGGGTAAGGCAGCCGAACCTCTTC
CTGTTCCAGAATGGCCCACGTACACCGATTCTGAAAGGGAGCAGCTCGTG
GCAGACTTATTGAACAAGTTCAACAGACGCATAGAGAAGGTTGTGAAAAT
TATCCTTTATAACTTTGGTGTGATCAAGCCTACGCGCTTCTATGACATCC
AAAAGAAGATCGTGAATATTGCAGGAAGGTTTGTCCATGCTAGGCTTGTA
GCTGAGGCGATGGAAAGAATTGAAACAGGAATCAGAACAGCCATGGAAGT
ATTTCGTAAGCCATCGTAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1035628..1037346-

>Ggra8977.t1 ID=Ggra8977.t1|Name=Ggra8977.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1719bp|location=Sequence derived from alignment at tig00000860_pilon:1035628..1037346- (Gracilaria gracilis GNS1m male)
ATGGTCGTTGCCGACACCACAACCCCTAGCTACAAACTTGGCCTCTGTCT
TGCCGGCGCAGCAACGGGCGGAGCCTATTCAGCCGGTGTTCTTGACTTCC
TTTTAGAGGCAGTAAATGAATGGCAAGCTCTCAAAAATGCGGGCGATCCA
TCTGTTCCACCGTGGGATGTAAACCTCAAAGAGGTCATTGGAACTTCGGC
TGGTGGAATCACGGCAACTCTTGCCATAGCTTGTCTCAACATTCCACATG
AACCCCTTCCTCATGACTACAAGCTTGGTGACCCATCGCCGAAGAACAAC
CCGCTCTTTCAAACATGGGTCAAAGAAATGAACGCCGATAGACTCCTGAG
CCTCGATGATCTCGACCAAATCCAGGAAGATGGCAAGGCTCACGTTCGTT
CGATTCTTAATGCTGAGTTCATGTCGACGACCGCCCCCAAAATGATCCAG
GAGAGGAATGCCACACAGACAATGCCAGCTTATGCGAGAGGTCTTTGTCT
ATCTCTTACTACCACCAATATGAGAGGCGTTCCGTACTCCCTCAATAACT
TCAGCTCCATCAATCCCAATGAAGCCTTCTATATGCGCCAGCATGCGGAC
TATTGCCAATACGCTGTTACTACCGATCCAGACTCCATCCCGGCCAAGGT
CAAAAACAGCAAGCATATTCTGGATATATCGCAGGGACCAACTGCTCCAG
GTTGGACCAGCGCTATCGACGCCTCAAAGGCTACGTCCGCCTTTCCTGCC
GGCTTTGCTACTGTGCGCATTAAAACACCTCGTTCTCACTATGAGAATCG
AATGGATATGCCTCCGTGTTGGAAAAACCACATCGAGATGAGAGGAGGAG
CCGGGTCTGGAGAGTCTCCCGAAGAAGCGGAAGAGTATACATACTGCGCC
GTTGACGGTGGAACGGTGAACAATGAGCCTTTTGGCCTGCTTGAGAGATT
CTTGTCAGAGGATGAGGGCAAGTGTTTGGAGATGAAGGGCAAAGACAGTT
GGGGTTCCATTATCCTTATCGATCCGTTTCCCAGTGTTTGGGACGACCCT
AGTTTGACTCAAGATGGAATGTCACTGCTACCTATGCTGTCTGCACTCAT
CTCCTCGATACGAGAGCAGGCCATGTTTAAGAGGGAAGAAATCGAGAAGG
CCGTTGACGACACCTGCATGGCAAAGTTCATGATTCGTCCACATAGGGAA
GTGAAGGAAGGAGAAGCATTCTCCATTGCCACCGCTACCATGGGAAGCTT
CGGTGGCATCTTAGACGAGAAGATTCGCCTGCATGACTTTCAACTTGGTC
GAGCTAATTGCAAAGACTTTTTGGAGAAGGTCTTCTGTATCGCTCGTGAG
GAGGCTTTAGAGAACAGCTTCTTCAACAGGCACGCTGAATTTCTGATCGA
GGAACGCATTCCCATTATACCAGTCGTGGGTAAGGCAGCCGAACCTCTTC
CTGTTCCAGAATGGCCCACGTACACCGATTCTGAAAGGGAGCAGCTCGTG
GCAGACTTATTGAACAAGTTCAACAGACGCATAGAGAAGGTTGTGAAAAT
TATCCTTTATAACTTTGGTGTGATCAAGCCTACGCGCTTCTATGACATCC
AAAAGAAGATCGTGAATATTGCAGGAAGGTTTGTCCATGCTAGGCTTGTA
GCTGAGGCGATGGAAAGAATTGAAACAGGAATCAGAACAGCCATGGAAGT
ATTTCGTAAGCCATCGTAG
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