Ggra8974.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8974.t1
Unique Name	Ggra8974.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	671

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:1026226..1028238 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_003633-tr
Preferred name	MCM9
PFAMs	MCM,MCM_OB
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10738,ko:K16766,ko:K18078
GOs	GO:0000003,GO:0000724,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007276,GO:0007292,GO:0008150,GO:0008152,GO:0009987,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044703,GO:0046483,GO:0048609,GO:0050896,GO:0051704,GO:0051716,GO:0071704,GO:0090304,GO:0097362,GO:1901360
Evalue	3.1e-177
EggNOG OGs	COG1241@1\|root,KOG0477@2759\|Eukaryota,38HAP@33154\|Opisthokonta,3BASV@33208\|Metazoa,3CTTX@33213\|Bilateria
EC	3.6.4.12
Description	Belongs to the MCM family
COG category	L
BRITE	ko00000,ko01000,ko01009,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8974	Ggra8974	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 1026226..1028238 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8974.t1.stop1	Ggra8974.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 1026226..1026228 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8974.t1.CDS1	Ggra8974.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 1026226..1028238 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8974.t1.exon1	Ggra8974.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 1026226..1028238 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8974.t1.start1	Ggra8974.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 1028236..1028238 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8974.t1	Ggra8974.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 1026226..1028238 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:1026226..1028238-
coding sequence from alignment at tig00000860_pilon:1026226..1028238-

mRNA sequence

>Ggra8974.t1 ID=Ggra8974.t1|Name=Ggra8974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=671bp
MITGTPPDYTKELEDYIRQECLTRVTEIAQATNDEEAHYGLEIDLMSVGH
SAPHVVTAILNDPYGMLPQLENAIQNVQASVGSKKTNIHARLCHLPATPQ
TVKRSISALRTGDLHKLISIIGTVTRTGSVILREEEREYICSRCKHSFIV
TGDITRRGAFDVPLRCPKPGDKQCYGNNFTPKQDIVPICQEYQEIKVQEK
VQHLDVGFIPRSLIIVLTNDIVDTVKPGDDVVITGVLHRRWNKNLVQASR
VDVELMLLASHVASNNDHKSFLHVTEESRQLFAAHWSSTSPRKQLEARNL
IIKSICPQIYGMYLLKLIVAMTLTGGVSYTDPSGTRIRGESHLLMVGDPG
TAKSQILRYAAKVCPRSVLTTGIGTTSAGLTVTAVREPGTGEWMLDAGAL
VLADGGVCCIDEFDGIKQHDRGAIHEAMEQQTLSVAKAGLVCTLDTRATV
LAAVNPKGGRIRTEIGVSEADDGDGDGEKLPITVGIASPLLSRFDVVLTL
LDQRNDDWDKELSSFILNGYKTDTVTNNDLWSTDRLREYFYFIKNNLKPR
LSKQCQRILSTYYTLERASTRRNAARTTVRLLEALVRLAQAHARLMFRET
ATPLDAVFAIAAVEASSATQEIVGGMGALHAPFPEDPKREFEEYCRYLLC
KLGLDGEDIDFYYDDAPVES*

spliced messenger RNA

>Ggra8974.t1 ID=Ggra8974.t1|Name=Ggra8974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000860_pilon:1026226..1028238- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAACTGGTACTCCACCTGACTACACGAAAGAGTTGGAAGACTATAT
ACGTCAAGAATGCCTTACTCGTGTTACTGAAATCGCTCAAGCTACTAATG
ATGAGGAAGCCCATTATGGGTTAGAAATTGATCTCATGTCCGTTGGGCAT
TCCGCACCACATGTTGTAACTGCGATTCTAAATGACCCGTATGGAATGCT
TCCTCAGCTGGAAAACGCGATTCAAAATGTGCAAGCTTCTGTGGGAAGTA
AGAAAACGAATATACATGCGAGACTTTGTCACCTGCCGGCAACGCCACAA
ACTGTGAAGAGAAGCATTAGTGCATTGCGAACAGGCGATCTTCACAAGCT
CATATCTATAATTGGTACGGTTACGAGAACCGGGAGCGTCATATTGAGAG
AGGAGGAACGGGAATACATATGCTCAAGATGCAAACATTCGTTCATAGTG
ACAGGCGATATCACGCGAAGGGGTGCGTTTGACGTTCCACTGCGGTGTCC
TAAGCCGGGTGACAAGCAATGCTATGGTAATAATTTCACCCCGAAGCAGG
ACATCGTCCCAATATGCCAAGAATACCAAGAAATCAAGGTACAAGAGAAG
GTTCAGCATTTGGATGTTGGTTTCATACCTCGGTCTCTCATAATTGTTCT
TACAAACGATATAGTCGACACGGTAAAACCTGGTGATGACGTCGTCATTA
CTGGAGTATTGCATCGTCGATGGAATAAAAACTTGGTACAGGCCTCGAGA
GTCGATGTAGAGCTCATGCTGCTTGCATCCCATGTCGCATCTAACAACGA
CCACAAATCATTTTTACATGTCACGGAAGAGTCCCGGCAGCTGTTTGCCG
CACATTGGTCGTCAACGAGTCCAAGGAAGCAGCTTGAGGCTCGTAATCTC
ATCATCAAATCCATATGTCCTCAGATATATGGTATGTATCTCTTGAAGCT
AATTGTCGCCATGACTCTGACTGGTGGGGTTTCCTACACAGATCCTTCAG
GAACTCGCATTCGCGGCGAGTCGCATCTGTTGATGGTTGGAGACCCGGGC
ACCGCGAAATCCCAGATTCTACGATACGCCGCTAAAGTATGTCCGCGTTC
GGTGCTAACGACCGGAATAGGTACGACATCTGCAGGACTCACGGTCACAG
CGGTGAGGGAGCCGGGCACCGGAGAATGGATGCTGGATGCAGGAGCGCTG
GTGCTTGCCGACGGAGGTGTTTGTTGCATCGACGAATTCGATGGTATAAA
ACAACATGATCGCGGAGCAATTCATGAAGCGATGGAGCAACAAACGTTGT
CCGTTGCAAAAGCGGGTCTTGTCTGCACGCTTGACACTCGGGCTACGGTT
TTAGCTGCAGTTAATCCAAAAGGCGGCAGAATAAGAACGGAGATTGGCGT
CTCTGAAGCAGATGATGGTGACGGTGACGGTGAAAAGCTGCCAATAACTG
TTGGAATTGCATCGCCGTTGCTGAGCCGGTTTGATGTTGTATTGACACTC
CTGGACCAGAGAAACGATGACTGGGATAAAGAACTATCGAGCTTCATTCT
GAATGGGTACAAGACTGACACCGTGACAAACAATGACCTGTGGTCAACAG
ACAGACTTCGTGAGTACTTCTATTTCATCAAGAATAATCTAAAGCCGCGG
CTATCGAAGCAATGCCAGCGGATTCTTTCAACCTATTACACTCTAGAAAG
AGCGTCAACAAGACGGAATGCAGCGAGAACAACAGTGCGTTTGCTAGAAG
CTCTGGTGCGTCTTGCGCAGGCGCACGCACGGCTGATGTTCAGAGAGACG
GCAACGCCTTTGGATGCGGTTTTTGCCATTGCTGCTGTGGAAGCTTCATC
CGCTACGCAAGAGATTGTGGGTGGGATGGGCGCGCTTCATGCCCCATTTC
CGGAGGACCCAAAGCGCGAGTTTGAAGAGTACTGTCGATATCTGTTGTGC
AAGTTAGGATTGGATGGTGAGGATATTGACTTTTATTACGACGATGCTCC
TGTAGAATCTTGA

protein sequence of Ggra8974.t1

>Ggra8974.t1 ID=Ggra8974.t1|Name=Ggra8974.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=671bp
MITGTPPDYTKELEDYIRQECLTRVTEIAQATNDEEAHYGLEIDLMSVGH
SAPHVVTAILNDPYGMLPQLENAIQNVQASVGSKKTNIHARLCHLPATPQ
TVKRSISALRTGDLHKLISIIGTVTRTGSVILREEEREYICSRCKHSFIV
TGDITRRGAFDVPLRCPKPGDKQCYGNNFTPKQDIVPICQEYQEIKVQEK
VQHLDVGFIPRSLIIVLTNDIVDTVKPGDDVVITGVLHRRWNKNLVQASR
VDVELMLLASHVASNNDHKSFLHVTEESRQLFAAHWSSTSPRKQLEARNL
IIKSICPQIYGMYLLKLIVAMTLTGGVSYTDPSGTRIRGESHLLMVGDPG
TAKSQILRYAAKVCPRSVLTTGIGTTSAGLTVTAVREPGTGEWMLDAGAL
VLADGGVCCIDEFDGIKQHDRGAIHEAMEQQTLSVAKAGLVCTLDTRATV
LAAVNPKGGRIRTEIGVSEADDGDGDGEKLPITVGIASPLLSRFDVVLTL
LDQRNDDWDKELSSFILNGYKTDTVTNNDLWSTDRLREYFYFIKNNLKPR
LSKQCQRILSTYYTLERASTRRNAARTTVRLLEALVRLAQAHARLMFRET
ATPLDAVFAIAAVEASSATQEIVGGMGALHAPFPEDPKREFEEYCRYLLC
KLGLDGEDIDFYYDDAPVES*

mRNA from alignment at tig00000860_pilon:1026226..1028238-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8974.t1 ID=Ggra8974.t1|Name=Ggra8974.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2013bp|location=Sequence derived from alignment at tig00000860_pilon:1026226..1028238- (Gracilaria gracilis GNS1m male)
ATGATAACTGGTACTCCACCTGACTACACGAAAGAGTTGGAAGACTATAT
ACGTCAAGAATGCCTTACTCGTGTTACTGAAATCGCTCAAGCTACTAATG
ATGAGGAAGCCCATTATGGGTTAGAAATTGATCTCATGTCCGTTGGGCAT
TCCGCACCACATGTTGTAACTGCGATTCTAAATGACCCGTATGGAATGCT
TCCTCAGCTGGAAAACGCGATTCAAAATGTGCAAGCTTCTGTGGGAAGTA
AGAAAACGAATATACATGCGAGACTTTGTCACCTGCCGGCAACGCCACAA
ACTGTGAAGAGAAGCATTAGTGCATTGCGAACAGGCGATCTTCACAAGCT
CATATCTATAATTGGTACGGTTACGAGAACCGGGAGCGTCATATTGAGAG
AGGAGGAACGGGAATACATATGCTCAAGATGCAAACATTCGTTCATAGTG
ACAGGCGATATCACGCGAAGGGGTGCGTTTGACGTTCCACTGCGGTGTCC
TAAGCCGGGTGACAAGCAATGCTATGGTAATAATTTCACCCCGAAGCAGG
ACATCGTCCCAATATGCCAAGAATACCAAGAAATCAAGGTACAAGAGAAG
GTTCAGCATTTGGATGTTGGTTTCATACCTCGGTCTCTCATAATTGTTCT
TACAAACGATATAGTCGACACGGTAAAACCTGGTGATGACGTCGTCATTA
CTGGAGTATTGCATCGTCGATGGAATAAAAACTTGGTACAGGCCTCGAGA
GTCGATGTAGAGCTCATGCTGCTTGCATCCCATGTCGCATCTAACAACGA
CCACAAATCATTTTTACATGTCACGGAAGAGTCCCGGCAGCTGTTTGCCG
CACATTGGTCGTCAACGAGTCCAAGGAAGCAGCTTGAGGCTCGTAATCTC
ATCATCAAATCCATATGTCCTCAGATATATGGTATGTATCTCTTGAAGCT
AATTGTCGCCATGACTCTGACTGGTGGGGTTTCCTACACAGATCCTTCAG
GAACTCGCATTCGCGGCGAGTCGCATCTGTTGATGGTTGGAGACCCGGGC
ACCGCGAAATCCCAGATTCTACGATACGCCGCTAAAGTATGTCCGCGTTC
GGTGCTAACGACCGGAATAGGTACGACATCTGCAGGACTCACGGTCACAG
CGGTGAGGGAGCCGGGCACCGGAGAATGGATGCTGGATGCAGGAGCGCTG
GTGCTTGCCGACGGAGGTGTTTGTTGCATCGACGAATTCGATGGTATAAA
ACAACATGATCGCGGAGCAATTCATGAAGCGATGGAGCAACAAACGTTGT
CCGTTGCAAAAGCGGGTCTTGTCTGCACGCTTGACACTCGGGCTACGGTT
TTAGCTGCAGTTAATCCAAAAGGCGGCAGAATAAGAACGGAGATTGGCGT
CTCTGAAGCAGATGATGGTGACGGTGACGGTGAAAAGCTGCCAATAACTG
TTGGAATTGCATCGCCGTTGCTGAGCCGGTTTGATGTTGTATTGACACTC
CTGGACCAGAGAAACGATGACTGGGATAAAGAACTATCGAGCTTCATTCT
GAATGGGTACAAGACTGACACCGTGACAAACAATGACCTGTGGTCAACAG
ACAGACTTCGTGAGTACTTCTATTTCATCAAGAATAATCTAAAGCCGCGG
CTATCGAAGCAATGCCAGCGGATTCTTTCAACCTATTACACTCTAGAAAG
AGCGTCAACAAGACGGAATGCAGCGAGAACAACAGTGCGTTTGCTAGAAG
CTCTGGTGCGTCTTGCGCAGGCGCACGCACGGCTGATGTTCAGAGAGACG
GCAACGCCTTTGGATGCGGTTTTTGCCATTGCTGCTGTGGAAGCTTCATC
CGCTACGCAAGAGATTGTGGGTGGGATGGGCGCGCTTCATGCCCCATTTC
CGGAGGACCCAAAGCGCGAGTTTGAAGAGTACTGTCGATATCTGTTGTGC
AAGTTAGGATTGGATGGTGAGGATATTGACTTTTATTACGACGATGCTCC
TGTAGAATCTTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:1026226..1028238-

>Ggra8974.t1 ID=Ggra8974.t1|Name=Ggra8974.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2013bp|location=Sequence derived from alignment at tig00000860_pilon:1026226..1028238- (Gracilaria gracilis GNS1m male)
ATGATAACTGGTACTCCACCTGACTACACGAAAGAGTTGGAAGACTATAT
ACGTCAAGAATGCCTTACTCGTGTTACTGAAATCGCTCAAGCTACTAATG
ATGAGGAAGCCCATTATGGGTTAGAAATTGATCTCATGTCCGTTGGGCAT
TCCGCACCACATGTTGTAACTGCGATTCTAAATGACCCGTATGGAATGCT
TCCTCAGCTGGAAAACGCGATTCAAAATGTGCAAGCTTCTGTGGGAAGTA
AGAAAACGAATATACATGCGAGACTTTGTCACCTGCCGGCAACGCCACAA
ACTGTGAAGAGAAGCATTAGTGCATTGCGAACAGGCGATCTTCACAAGCT
CATATCTATAATTGGTACGGTTACGAGAACCGGGAGCGTCATATTGAGAG
AGGAGGAACGGGAATACATATGCTCAAGATGCAAACATTCGTTCATAGTG
ACAGGCGATATCACGCGAAGGGGTGCGTTTGACGTTCCACTGCGGTGTCC
TAAGCCGGGTGACAAGCAATGCTATGGTAATAATTTCACCCCGAAGCAGG
ACATCGTCCCAATATGCCAAGAATACCAAGAAATCAAGGTACAAGAGAAG
GTTCAGCATTTGGATGTTGGTTTCATACCTCGGTCTCTCATAATTGTTCT
TACAAACGATATAGTCGACACGGTAAAACCTGGTGATGACGTCGTCATTA
CTGGAGTATTGCATCGTCGATGGAATAAAAACTTGGTACAGGCCTCGAGA
GTCGATGTAGAGCTCATGCTGCTTGCATCCCATGTCGCATCTAACAACGA
CCACAAATCATTTTTACATGTCACGGAAGAGTCCCGGCAGCTGTTTGCCG
CACATTGGTCGTCAACGAGTCCAAGGAAGCAGCTTGAGGCTCGTAATCTC
ATCATCAAATCCATATGTCCTCAGATATATGGTATGTATCTCTTGAAGCT
AATTGTCGCCATGACTCTGACTGGTGGGGTTTCCTACACAGATCCTTCAG
GAACTCGCATTCGCGGCGAGTCGCATCTGTTGATGGTTGGAGACCCGGGC
ACCGCGAAATCCCAGATTCTACGATACGCCGCTAAAGTATGTCCGCGTTC
GGTGCTAACGACCGGAATAGGTACGACATCTGCAGGACTCACGGTCACAG
CGGTGAGGGAGCCGGGCACCGGAGAATGGATGCTGGATGCAGGAGCGCTG
GTGCTTGCCGACGGAGGTGTTTGTTGCATCGACGAATTCGATGGTATAAA
ACAACATGATCGCGGAGCAATTCATGAAGCGATGGAGCAACAAACGTTGT
CCGTTGCAAAAGCGGGTCTTGTCTGCACGCTTGACACTCGGGCTACGGTT
TTAGCTGCAGTTAATCCAAAAGGCGGCAGAATAAGAACGGAGATTGGCGT
CTCTGAAGCAGATGATGGTGACGGTGACGGTGAAAAGCTGCCAATAACTG
TTGGAATTGCATCGCCGTTGCTGAGCCGGTTTGATGTTGTATTGACACTC
CTGGACCAGAGAAACGATGACTGGGATAAAGAACTATCGAGCTTCATTCT
GAATGGGTACAAGACTGACACCGTGACAAACAATGACCTGTGGTCAACAG
ACAGACTTCGTGAGTACTTCTATTTCATCAAGAATAATCTAAAGCCGCGG
CTATCGAAGCAATGCCAGCGGATTCTTTCAACCTATTACACTCTAGAAAG
AGCGTCAACAAGACGGAATGCAGCGAGAACAACAGTGCGTTTGCTAGAAG
CTCTGGTGCGTCTTGCGCAGGCGCACGCACGGCTGATGTTCAGAGAGACG
GCAACGCCTTTGGATGCGGTTTTTGCCATTGCTGCTGTGGAAGCTTCATC
CGCTACGCAAGAGATTGTGGGTGGGATGGGCGCGCTTCATGCCCCATTTC
CGGAGGACCCAAAGCGCGAGTTTGAAGAGTACTGTCGATATCTGTTGTGC
AAGTTAGGATTGGATGGTGAGGATATTGACTTTTATTACGACGATGCTCC
TGTAGAATCTTGA