Ggra8969.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8969.t1
Unique Name	Ggra8969.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	454

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:998415..999776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_12962T0
Max annot lvl	33154\|Opisthokonta
Evalue	2.29e-08
EggNOG OGs	2E93I@1\|root,2SFHA@2759\|Eukaryota,3AV0X@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8969	Ggra8969	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 998415..999776 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8969.t1.stop1	Ggra8969.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 998415..998417 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8969.t1.CDS1	Ggra8969.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 998415..999776 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8969.t1.exon1	Ggra8969.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 998415..999776 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8969.t1.start1	Ggra8969.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 999774..999776 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8969.t1	Ggra8969.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 998415..999776 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:998415..999776-
coding sequence from alignment at tig00000860_pilon:998415..999776-

mRNA sequence

>Ggra8969.t1 ID=Ggra8969.t1|Name=Ggra8969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=454bp
MPFRRHAKNSKVGENGSTCFRTLFRNATLIWAILLVHSFFAYGGVEHASE
PQLTIGLPFENATIPVKPASLEKETLALQRLLIDDYLEFHKKARLKAEMS
SSEHAVIRTLVFKGKLWAGLGDRLRGVVQAYLLAVATRRVLLIDWEKPFP
LHHVLDSDAGGSNFSYDEFVFAHSQRKANGRRDSIHIREASFSDLKVVAG
NISTVFMVVNRFPEWKLFADLWRSHPKLAISFQLWSLREVNEKVRPADAY
SMILGAVLRTSEQLRWSVDQVRRGQNACFPCVLCFNHEQKEAQVMRYISI
HARLGSAIESDSPQRFNFSTHGLRMREVAKCMAWHAKAAAKGVGEDVKGF
FIASDTREMRYLLKDELRLCSGCDRDTRVMHGGCAVRHVRELQSDSEQDH
DLFMSTFVELAMLAGGEAMISLKSGYADLAVWMGAIRLHKQLSFEQCALE
LQH*

spliced messenger RNA

>Ggra8969.t1 ID=Ggra8969.t1|Name=Ggra8969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000860_pilon:998415..999776- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATTCCGCAGACATGCAAAGAATTCAAAGGTTGGTGAAAATGGTTC
TACCTGCTTTAGAACCCTATTCAGGAATGCAACGTTGATCTGGGCGATAT
TGCTCGTCCATTCATTCTTTGCGTACGGCGGTGTTGAGCACGCTAGCGAA
CCCCAATTGACGATTGGGTTGCCGTTCGAAAATGCGACGATTCCTGTTAA
ACCAGCCTCGTTGGAGAAGGAAACACTAGCGCTACAGCGCTTGTTAATCG
ATGACTACCTGGAGTTTCACAAAAAAGCGAGACTGAAAGCGGAGATGAGC
AGCAGCGAGCATGCAGTGATTCGCACCCTGGTCTTTAAGGGAAAGCTATG
GGCTGGTCTGGGGGATCGTCTTCGAGGCGTAGTTCAGGCTTACTTGCTTG
CCGTAGCGACTAGAAGGGTTTTGCTGATAGATTGGGAAAAGCCATTTCCG
CTGCATCATGTGCTAGATTCAGATGCTGGCGGAAGCAATTTTTCTTATGA
CGAATTTGTGTTTGCGCATTCACAACGGAAGGCTAACGGCAGACGAGACA
GTATACATATTCGCGAGGCCAGCTTCTCCGACTTGAAGGTGGTTGCCGGT
AACATCAGCACGGTGTTCATGGTGGTGAATCGATTTCCGGAGTGGAAGCT
GTTTGCGGACTTGTGGCGATCACATCCGAAGTTGGCCATATCCTTTCAGT
TATGGTCGTTACGGGAAGTGAACGAGAAGGTACGCCCCGCAGATGCGTAC
TCAATGATCTTGGGGGCTGTACTTCGAACGTCGGAGCAACTCCGATGGAG
TGTAGATCAGGTGCGACGTGGGCAAAACGCGTGCTTTCCGTGCGTGCTTT
GTTTCAACCACGAGCAGAAAGAAGCGCAAGTGATGCGTTACATTTCAATC
CACGCAAGACTTGGAAGTGCCATAGAGAGCGACTCGCCGCAGCGTTTCAA
CTTCAGTACTCATGGCCTGCGTATGAGGGAGGTGGCAAAATGCATGGCGT
GGCACGCAAAAGCGGCTGCAAAGGGAGTCGGGGAAGACGTGAAAGGCTTC
TTCATTGCATCGGACACGAGGGAGATGCGCTACTTGCTGAAGGACGAGCT
GCGATTGTGCAGTGGATGCGACAGGGATACGCGGGTGATGCACGGTGGAT
GCGCCGTGCGGCACGTACGAGAGTTGCAAAGCGACAGTGAACAGGACCAC
GACTTGTTCATGAGCACATTCGTTGAACTGGCAATGCTGGCGGGAGGCGA
AGCAATGATCAGTCTCAAGTCCGGCTATGCCGACTTGGCCGTGTGGATGG
GCGCCATTCGCCTCCACAAGCAGCTTTCGTTCGAGCAATGCGCTCTGGAA
CTCCAACATTGA

protein sequence of Ggra8969.t1

>Ggra8969.t1 ID=Ggra8969.t1|Name=Ggra8969.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=454bp
MPFRRHAKNSKVGENGSTCFRTLFRNATLIWAILLVHSFFAYGGVEHASE
PQLTIGLPFENATIPVKPASLEKETLALQRLLIDDYLEFHKKARLKAEMS
SSEHAVIRTLVFKGKLWAGLGDRLRGVVQAYLLAVATRRVLLIDWEKPFP
LHHVLDSDAGGSNFSYDEFVFAHSQRKANGRRDSIHIREASFSDLKVVAG
NISTVFMVVNRFPEWKLFADLWRSHPKLAISFQLWSLREVNEKVRPADAY
SMILGAVLRTSEQLRWSVDQVRRGQNACFPCVLCFNHEQKEAQVMRYISI
HARLGSAIESDSPQRFNFSTHGLRMREVAKCMAWHAKAAAKGVGEDVKGF
FIASDTREMRYLLKDELRLCSGCDRDTRVMHGGCAVRHVRELQSDSEQDH
DLFMSTFVELAMLAGGEAMISLKSGYADLAVWMGAIRLHKQLSFEQCALE
LQH*

mRNA from alignment at tig00000860_pilon:998415..999776-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8969.t1 ID=Ggra8969.t1|Name=Ggra8969.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00000860_pilon:998415..999776- (Gracilaria gracilis GNS1m male)
ATGCCATTCCGCAGACATGCAAAGAATTCAAAGGTTGGTGAAAATGGTTC
TACCTGCTTTAGAACCCTATTCAGGAATGCAACGTTGATCTGGGCGATAT
TGCTCGTCCATTCATTCTTTGCGTACGGCGGTGTTGAGCACGCTAGCGAA
CCCCAATTGACGATTGGGTTGCCGTTCGAAAATGCGACGATTCCTGTTAA
ACCAGCCTCGTTGGAGAAGGAAACACTAGCGCTACAGCGCTTGTTAATCG
ATGACTACCTGGAGTTTCACAAAAAAGCGAGACTGAAAGCGGAGATGAGC
AGCAGCGAGCATGCAGTGATTCGCACCCTGGTCTTTAAGGGAAAGCTATG
GGCTGGTCTGGGGGATCGTCTTCGAGGCGTAGTTCAGGCTTACTTGCTTG
CCGTAGCGACTAGAAGGGTTTTGCTGATAGATTGGGAAAAGCCATTTCCG
CTGCATCATGTGCTAGATTCAGATGCTGGCGGAAGCAATTTTTCTTATGA
CGAATTTGTGTTTGCGCATTCACAACGGAAGGCTAACGGCAGACGAGACA
GTATACATATTCGCGAGGCCAGCTTCTCCGACTTGAAGGTGGTTGCCGGT
AACATCAGCACGGTGTTCATGGTGGTGAATCGATTTCCGGAGTGGAAGCT
GTTTGCGGACTTGTGGCGATCACATCCGAAGTTGGCCATATCCTTTCAGT
TATGGTCGTTACGGGAAGTGAACGAGAAGGTACGCCCCGCAGATGCGTAC
TCAATGATCTTGGGGGCTGTACTTCGAACGTCGGAGCAACTCCGATGGAG
TGTAGATCAGGTGCGACGTGGGCAAAACGCGTGCTTTCCGTGCGTGCTTT
GTTTCAACCACGAGCAGAAAGAAGCGCAAGTGATGCGTTACATTTCAATC
CACGCAAGACTTGGAAGTGCCATAGAGAGCGACTCGCCGCAGCGTTTCAA
CTTCAGTACTCATGGCCTGCGTATGAGGGAGGTGGCAAAATGCATGGCGT
GGCACGCAAAAGCGGCTGCAAAGGGAGTCGGGGAAGACGTGAAAGGCTTC
TTCATTGCATCGGACACGAGGGAGATGCGCTACTTGCTGAAGGACGAGCT
GCGATTGTGCAGTGGATGCGACAGGGATACGCGGGTGATGCACGGTGGAT
GCGCCGTGCGGCACGTACGAGAGTTGCAAAGCGACAGTGAACAGGACCAC
GACTTGTTCATGAGCACATTCGTTGAACTGGCAATGCTGGCGGGAGGCGA
AGCAATGATCAGTCTCAAGTCCGGCTATGCCGACTTGGCCGTGTGGATGG
GCGCCATTCGCCTCCACAAGCAGCTTTCGTTCGAGCAATGCGCTCTGGAA
CTCCAACATTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:998415..999776-

>Ggra8969.t1 ID=Ggra8969.t1|Name=Ggra8969.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00000860_pilon:998415..999776- (Gracilaria gracilis GNS1m male)
ATGCCATTCCGCAGACATGCAAAGAATTCAAAGGTTGGTGAAAATGGTTC
TACCTGCTTTAGAACCCTATTCAGGAATGCAACGTTGATCTGGGCGATAT
TGCTCGTCCATTCATTCTTTGCGTACGGCGGTGTTGAGCACGCTAGCGAA
CCCCAATTGACGATTGGGTTGCCGTTCGAAAATGCGACGATTCCTGTTAA
ACCAGCCTCGTTGGAGAAGGAAACACTAGCGCTACAGCGCTTGTTAATCG
ATGACTACCTGGAGTTTCACAAAAAAGCGAGACTGAAAGCGGAGATGAGC
AGCAGCGAGCATGCAGTGATTCGCACCCTGGTCTTTAAGGGAAAGCTATG
GGCTGGTCTGGGGGATCGTCTTCGAGGCGTAGTTCAGGCTTACTTGCTTG
CCGTAGCGACTAGAAGGGTTTTGCTGATAGATTGGGAAAAGCCATTTCCG
CTGCATCATGTGCTAGATTCAGATGCTGGCGGAAGCAATTTTTCTTATGA
CGAATTTGTGTTTGCGCATTCACAACGGAAGGCTAACGGCAGACGAGACA
GTATACATATTCGCGAGGCCAGCTTCTCCGACTTGAAGGTGGTTGCCGGT
AACATCAGCACGGTGTTCATGGTGGTGAATCGATTTCCGGAGTGGAAGCT
GTTTGCGGACTTGTGGCGATCACATCCGAAGTTGGCCATATCCTTTCAGT
TATGGTCGTTACGGGAAGTGAACGAGAAGGTACGCCCCGCAGATGCGTAC
TCAATGATCTTGGGGGCTGTACTTCGAACGTCGGAGCAACTCCGATGGAG
TGTAGATCAGGTGCGACGTGGGCAAAACGCGTGCTTTCCGTGCGTGCTTT
GTTTCAACCACGAGCAGAAAGAAGCGCAAGTGATGCGTTACATTTCAATC
CACGCAAGACTTGGAAGTGCCATAGAGAGCGACTCGCCGCAGCGTTTCAA
CTTCAGTACTCATGGCCTGCGTATGAGGGAGGTGGCAAAATGCATGGCGT
GGCACGCAAAAGCGGCTGCAAAGGGAGTCGGGGAAGACGTGAAAGGCTTC
TTCATTGCATCGGACACGAGGGAGATGCGCTACTTGCTGAAGGACGAGCT
GCGATTGTGCAGTGGATGCGACAGGGATACGCGGGTGATGCACGGTGGAT
GCGCCGTGCGGCACGTACGAGAGTTGCAAAGCGACAGTGAACAGGACCAC
GACTTGTTCATGAGCACATTCGTTGAACTGGCAATGCTGGCGGGAGGCGA
AGCAATGATCAGTCTCAAGTCCGGCTATGCCGACTTGGCCGTGTGGATGG
GCGCCATTCGCCTCCACAAGCAGCTTTCGTTCGAGCAATGCGCTCTGGAA
CTCCAACATTGA