Ggra8965.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8965.t1
Unique NameGgra8965.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:987824..988858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704553.1
PFAMsSWIM,zf-RING_2
Max annot lvl2759|Eukaryota
GOsGO:0000165,GO:0000186,GO:0000209,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004706,GO:0004709,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007254,GO:0007256,GO:0007346,GO:0008150,GO:0008152,GO:0008289,GO:0008432,GO:0009056,GO:0009057,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019900,GO:0019901,GO:0019941,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030163,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031434,GO:0032147,GO:0032231,GO:0032232,GO:0032268,GO:0032270,GO:0032446,GO:0032872,GO:0032874,GO:0032956,GO:0032970,GO:0033043,GO:0033554,GO:0033674,GO:0035556,GO:0036211,GO:0042325,GO:0042327,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043506,GO:0043507,GO:0043549,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046328,GO:0046330,GO:0046625,GO:0046777,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048584,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051019,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051259,GO:0051338,GO:0051347,GO:0051403,GO:0051493,GO:0051494,GO:0051603,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070302,GO:0070304,GO:0070647,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0110053,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902533,GO:1902680,GO:1902903,GO:1902904,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue2.35e-14
EggNOG OGs2AKTQ@1|root,2RZA9@2759|Eukaryota
DescriptionRing finger
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8965Ggra8965Gracilaria gracilis GNS1m malegenetig00000860_pilon 987824..988858 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1.start1Ggra8965.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 987824..987826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1.CDS1Ggra8965.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 987824..988858 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1.exon1Ggra8965.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 987824..988858 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1.stop1Ggra8965.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 988856..988858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8965.t1Ggra8965.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 987824..988858 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MADKTESTRLSRALGERMYLIQQLAADDDHDHDHDHDHDGKPRTSFLVTG
QSGKLYTVSFPTRADDDKDDDDEDDEDDGGGGGGGEAARCNCMDHVIRKT
VCKHILFIATRVLHAPRSWFASDADARGAPALQRAARLVSPLLARSGSSG
SGIGSGSSAAPEAVRLAVQRAAPHAFASATRVSRKRVEEEDECGICFERL
LAEALSFCAFGCGRAVHAACFARYEQATRGDARCVLCRAQWRRDARQRVG
RRGVLARGRLIDVSEVLPELFAAPPPAPAASKPRARAARNKPRANSAAQK
AGLVPHRGAVTKRSGAVRKRAAERSRVRRARAHGMTLRSASRAR*
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spliced messenger RNA

>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000860_pilon:987824..988858+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGACAAGACGGAGTCGACGCGGCTGTCGCGCGCGCTCGGCGAGCG
CATGTACTTGATCCAGCAACTGGCGGCGGACGacgaccacgaccacgacc
acgaccacgaccacgacGGGAAGCCGCGCACAAGCTTCCTGGTCACGGGG
CAGAGCGGCAAGCTATACACCGTGTCGTTCCCCACGCGCGCGgacgatga
caaagacgatgatgacgaagacgacgaagacgacggcggcggcggcggcg
gcggcgaggcggctcgctgcaactgcatggACCACGTGATCCGCAAGACG
GTGTGCAAGCACATATTGTTCATCGCGACGCGCGTGCTGCACGCGCCGCG
CAGCTGGTTCGCATCCGACGCCGACGCGCGCGGCGCGCCCGCGCTACAGC
GCGCCGCGCGGCTTGTATCGCCGCTGCTGGCGCGCAGCGGCAGCAGCGGC
AGCGGCATCGGCAGCGGCAGCAGCGCGGCGCCGGAGGCGGTACGGCTGGC
AGTGCAGCGCGCGGCGCCGCACGCGTTCGCCAGCGCGACGCGCGTGTCGC
GCAAGCGCGTGGAGGAGGAGGACGAGTGCGGCATCTGCTTCGAGCGGCTG
TTGGCGGAGGCGCTGTCGTTCTGCGCGTTTGGGTGCGGGCGCGCCGTACA
CGCCGCGTGCTTCGCGCGCTATGAGCAAGCCACGCGCGGCGACGCGCGCT
GCGTGCTGTGCCGCGCGCAGTGGCGGCGCGACGCGCGCCAGCGCGTGGGC
CGGCGCGGCGTGCTGGCGCGCGGCCGCCTCATCGACGTCAGCGAGGTGCT
GCCCGAGCTGTTcgccgcgccgccgccggcgccggccgcGAGCAAGCCGC
GCGCGCGCGCTGCGCGGAACAAGCCGCGCGCCAATTCAGCCGCGCAGAAG
GCTGGATTGGTTCCGCACCGCGGCGCGGTGACCAAGCGCAGCGGCGCGGT
GCGGAAGCGCGCGGCGGAGCGCTCGCGCGTGCGGCGCGCGCGCGCGCACG
GTATGACGTTGCGCTCCGCGTCGCGCGCGCGTTGA
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protein sequence of Ggra8965.t1

>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MADKTESTRLSRALGERMYLIQQLAADDDHDHDHDHDHDGKPRTSFLVTG
QSGKLYTVSFPTRADDDKDDDDEDDEDDGGGGGGGEAARCNCMDHVIRKT
VCKHILFIATRVLHAPRSWFASDADARGAPALQRAARLVSPLLARSGSSG
SGIGSGSSAAPEAVRLAVQRAAPHAFASATRVSRKRVEEEDECGICFERL
LAEALSFCAFGCGRAVHAACFARYEQATRGDARCVLCRAQWRRDARQRVG
RRGVLARGRLIDVSEVLPELFAAPPPAPAASKPRARAARNKPRANSAAQK
AGLVPHRGAVTKRSGAVRKRAAERSRVRRARAHGMTLRSASRAR*
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mRNA from alignment at tig00000860_pilon:987824..988858+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000860_pilon:987824..988858+ (Gracilaria gracilis GNS1m male)
ATGGCGGACAAGACGGAGTCGACGCGGCTGTCGCGCGCGCTCGGCGAGCG
CATGTACTTGATCCAGCAACTGGCGGCGGACGacgaccacgaccacgacc
acgaccacgaccacgacGGGAAGCCGCGCACAAGCTTCCTGGTCACGGGG
CAGAGCGGCAAGCTATACACCGTGTCGTTCCCCACGCGCGCGgacgatga
caaagacgatgatgacgaagacgacgaagacgacggcggcggcggcggcg
gcggcgaggcggctcgctgcaactgcatggACCACGTGATCCGCAAGACG
GTGTGCAAGCACATATTGTTCATCGCGACGCGCGTGCTGCACGCGCCGCG
CAGCTGGTTCGCATCCGACGCCGACGCGCGCGGCGCGCCCGCGCTACAGC
GCGCCGCGCGGCTTGTATCGCCGCTGCTGGCGCGCAGCGGCAGCAGCGGC
AGCGGCATCGGCAGCGGCAGCAGCGCGGCGCCGGAGGCGGTACGGCTGGC
AGTGCAGCGCGCGGCGCCGCACGCGTTCGCCAGCGCGACGCGCGTGTCGC
GCAAGCGCGTGGAGGAGGAGGACGAGTGCGGCATCTGCTTCGAGCGGCTG
TTGGCGGAGGCGCTGTCGTTCTGCGCGTTTGGGTGCGGGCGCGCCGTACA
CGCCGCGTGCTTCGCGCGCTATGAGCAAGCCACGCGCGGCGACGCGCGCT
GCGTGCTGTGCCGCGCGCAGTGGCGGCGCGACGCGCGCCAGCGCGTGGGC
CGGCGCGGCGTGCTGGCGCGCGGCCGCCTCATCGACGTCAGCGAGGTGCT
GCCCGAGCTGTTcgccgcgccgccgccggcgccggccgcGAGCAAGCCGC
GCGCGCGCGCTGCGCGGAACAAGCCGCGCGCCAATTCAGCCGCGCAGAAG
GCTGGATTGGTTCCGCACCGCGGCGCGGTGACCAAGCGCAGCGGCGCGGT
GCGGAAGCGCGCGGCGGAGCGCTCGCGCGTGCGGCGCGCGCGCGCGCACG
GTATGACGTTGCGCTCCGCGTCGCGCGCGCGTTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:987824..988858+

>Ggra8965.t1 ID=Ggra8965.t1|Name=Ggra8965.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000860_pilon:987824..988858+ (Gracilaria gracilis GNS1m male)
ATGGCGGACAAGACGGAGTCGACGCGGCTGTCGCGCGCGCTCGGCGAGCG
CATGTACTTGATCCAGCAACTGGCGGCGGACGacgaccacgaccacgacc
acgaccacgaccacgacGGGAAGCCGCGCACAAGCTTCCTGGTCACGGGG
CAGAGCGGCAAGCTATACACCGTGTCGTTCCCCACGCGCGCGgacgatga
caaagacgatgatgacgaagacgacgaagacgacggcggcggcggcggcg
gcggcgaggcggctcgctgcaactgcatggACCACGTGATCCGCAAGACG
GTGTGCAAGCACATATTGTTCATCGCGACGCGCGTGCTGCACGCGCCGCG
CAGCTGGTTCGCATCCGACGCCGACGCGCGCGGCGCGCCCGCGCTACAGC
GCGCCGCGCGGCTTGTATCGCCGCTGCTGGCGCGCAGCGGCAGCAGCGGC
AGCGGCATCGGCAGCGGCAGCAGCGCGGCGCCGGAGGCGGTACGGCTGGC
AGTGCAGCGCGCGGCGCCGCACGCGTTCGCCAGCGCGACGCGCGTGTCGC
GCAAGCGCGTGGAGGAGGAGGACGAGTGCGGCATCTGCTTCGAGCGGCTG
TTGGCGGAGGCGCTGTCGTTCTGCGCGTTTGGGTGCGGGCGCGCCGTACA
CGCCGCGTGCTTCGCGCGCTATGAGCAAGCCACGCGCGGCGACGCGCGCT
GCGTGCTGTGCCGCGCGCAGTGGCGGCGCGACGCGCGCCAGCGCGTGGGC
CGGCGCGGCGTGCTGGCGCGCGGCCGCCTCATCGACGTCAGCGAGGTGCT
GCCCGAGCTGTTcgccgcgccgccgccggcgccggccgcGAGCAAGCCGC
GCGCGCGCGCTGCGCGGAACAAGCCGCGCGCCAATTCAGCCGCGCAGAAG
GCTGGATTGGTTCCGCACCGCGGCGCGGTGACCAAGCGCAGCGGCGCGGT
GCGGAAGCGCGCGGCGGAGCGCTCGCGCGTGCGGCGCGCGCGCGCGCACG
GTATGACGTTGCGCTCCGCGTCGCGCGCGCGTTGA
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