Ggra8963.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8963.t1
Unique NameGgra8963.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length576
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:983790..985868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709275.1
PFAMsABC1
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Evalue5.61e-124
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
COG categoryE
BRITEko00000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8963Ggra8963Gracilaria gracilis GNS1m malegenetig00000860_pilon 983790..985868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1Ggra8963.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 983790..985868 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1.start1Ggra8963.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 983790..983792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1.CDS1Ggra8963.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 983790..984236 +
Ggra8963.t1.CDS2Ggra8963.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 984312..984357 +
Ggra8963.t1.CDS3Ggra8963.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 984438..985085 +
Ggra8963.t1.CDS4Ggra8963.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 985203..985217 +
Ggra8963.t1.CDS5Ggra8963.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000860_pilon 985297..985868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1.exon1Ggra8963.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 983790..984236 +
Ggra8963.t1.exon2Ggra8963.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 984312..984357 +
Ggra8963.t1.exon3Ggra8963.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 984438..985085 +
Ggra8963.t1.exon4Ggra8963.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 985203..985217 +
Ggra8963.t1.exon5Ggra8963.t1.exon5Gracilaria gracilis GNS1m maleexontig00000860_pilon 985297..985868 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1.intron1Ggra8963.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 984237..984311 +
Ggra8963.t1.intron2Ggra8963.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 984358..984437 +
Ggra8963.t1.intron3Ggra8963.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 985086..985202 +
Ggra8963.t1.intron4Ggra8963.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000860_pilon 985218..985296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8963.t1.stop1Ggra8963.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 985866..985868 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8963.t1 ID=Ggra8963.t1|Name=Ggra8963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp
MRFAPLRSLLLRRSASIPRVALNALRVVPLRRARVPVALVNTSLLALTQS
LLAKKRWNLFQALILLSVSNMPLIGLLAPLFKPLCFTWMYALLCRLFAPA
HVRSLRFWRRVIPIYVSYKKTQMSLAVQNASAQQRAKAWSKRHHWAAEKV
YNLCVELRGFYLKDGQFLGARSDIVPMAWCDSLRRLQDRVPPVPFSQIES
TIRQSYNVNKVSQIFNHLDSNPLASATIAQVHRGQMPDGTPIVLKTQYID
QQRLCDMDLLNLKRLASYLQKHDMSFFDMDSVVKEFETQIPAEFDFLREA
EMMTIIRNNLRRAGIFDVVIPKVITGLVSRRALTMTYVDGVRPDNSLALN
HWGIKPKHVLKAVGRAFGQMLLCDGLAHCDPHLGNLIIMRDGKVALIDFG
QAKEIPEDLRKKLCAFYLAVNSKNNLHILQTFSDLGIELDIRFEDIDEKF
MRMIPHYANGMLDTAPLPPEIEINPFSTESPLKQVPIKRFNPDLFMILRT
MGLLRSLTETLNVETTDCWMSNLFRPYALRGIRRKGLSDYEKRSRSRAIR
SALTKGVPSPFDCQDEEYTEFCSIS*
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spliced messenger RNA

>Ggra8963.t1 ID=Ggra8963.t1|Name=Ggra8963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000860_pilon:983790..985868+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGCGCCGCTTCGCTCGCTGTTGCTGAGGAGAAGCGCGTCCAT
CCCGCGGGTGGCCCTCAATGCGCTGCGCGTTGTTCCTCTTCGCCGCGCGC
GCGTTCCTGTCGCCTTGGTCAACACGTCGCTGCTCGCGCTCACGCAGTCG
CTGTTAGCCAAGAAGCGATGGAACCTGTTTCAGGCGCTTATTTTGCTCTC
CGTGTCCAACATGCCGCTCATCGGCTTGTTGGCGCCCTTGTTTAAACCGT
TGTGTTTTACTTGGATGTATGCTTTGCTCTGCAGACTGTTTGCTCCGGCC
CATGTGCGAAGTCTCAGGTTCTGGAGACGAGTTATTCCCATCTATGTCTC
ATACAAGAAAACTCAGATGTCTCTCGCGGTGCAGAATGCTTCTGCTCAGC
AAAGAGCAAAGGCTTGGAGCAAGCGTCACCACTGGGCTGCCGAAAAGGTC
TACAATCTTTGCGTCGAGCTTCGCGGTTTCTACCTCAAGGATGGACAATT
TCTGGGCGCCAGGAGTGACATCGTACCAATGGCGTGGTGTGATTCGCTTC
GTCGTTTACAAGATCGCGTTCCCCCCGTTCCATTTTCCCAGATCGAGAGC
ACAATTCGCCAATCCTACAACGTCAACAAAGTCAGTCAAATATTCAATCA
CCTAGATTCAAATCCGCTTGCGTCCGCCACCATTGCGCAGGTGCATCGAG
GACAAATGCCAGACGGCACTCCAATCGTGTTGAAGACCCAGTACATTGAT
CAACAACGTCTCTGCGATATGGATCTGCTCAATCTAAAAAGACTCGCGTC
ATACCTTCAGAAGCATGACATGTCGTTCTTTGACATGGATTCGGTCGTCA
AAGAGTTTGAAACACAGATTCCTGCCGAATTTGACTTTCTAAGAGAGGCT
GAAATGATGACCATCATTCGAAACAACCTGAGGCGCGCTGGCATTTTTGA
CGTTGTCATACCCAAAGTGATAACGGGACTTGTTTCACGTCGAGCTCTAA
CAATGACGTATGTAGATGGTGTTCGCCCGGACAATTCGCTCGCGTTGAAT
CATTGGGGCATCAAACCGAAGCATGTGCTCAAGGCCGTTGGTAGGGCGTT
TGGACAGATGTTGTTGTGTGACGGCCTTGCACACTGTGACCCTCATCTTG
GAAACTTGATCATCATGAGGGACGGAAAGGTGGCGCTTATTGATTTTGGT
CAGGCCAAGGAGATTCCTGAAGATTTGCGGAAGAAGCTTTGTGCCTTCTA
CCTGGCTGTCAACTCAAAGAACAATCTGCACATCCTCCAGACCTTTTCGG
ACCTTGGAATTGAGCTTGACATTCGTTTCGAAGATATTGATGAAAAGTTC
ATGCGCATGATTCCGCATTACGCGAACGGAATGCTTGATACGGCTCCTCT
ACCGCCGGAGATCGAAATCAACCCGTTTTCTACGGAGAGCCCGCTGAAGC
AAGTGCCAATCAAGAGATTTAATCCCGATCTGTTTATGATTCTGCGTACG
ATGGGCCTTTTGAGATCACTGACGGAGACTTTGAACGTTGAAACAACCGA
CTGCTGGATGTCTAACCTGTTTAGACCGTATGCATTGCGCGGAATACGTC
GCAAAGGTCTGTCTGATTACGAGAAGCGGAGTCGATCCAGGGCAATCAGA
TCTGCTTTGACGAAGGGCGTGCCCTCACCTTTTGACTGCCAAGATGAGGA
GTACACCGAGTTTTGTTCCATCTCGTGA
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protein sequence of Ggra8963.t1

>Ggra8963.t1 ID=Ggra8963.t1|Name=Ggra8963.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=576bp
MRFAPLRSLLLRRSASIPRVALNALRVVPLRRARVPVALVNTSLLALTQS
LLAKKRWNLFQALILLSVSNMPLIGLLAPLFKPLCFTWMYALLCRLFAPA
HVRSLRFWRRVIPIYVSYKKTQMSLAVQNASAQQRAKAWSKRHHWAAEKV
YNLCVELRGFYLKDGQFLGARSDIVPMAWCDSLRRLQDRVPPVPFSQIES
TIRQSYNVNKVSQIFNHLDSNPLASATIAQVHRGQMPDGTPIVLKTQYID
QQRLCDMDLLNLKRLASYLQKHDMSFFDMDSVVKEFETQIPAEFDFLREA
EMMTIIRNNLRRAGIFDVVIPKVITGLVSRRALTMTYVDGVRPDNSLALN
HWGIKPKHVLKAVGRAFGQMLLCDGLAHCDPHLGNLIIMRDGKVALIDFG
QAKEIPEDLRKKLCAFYLAVNSKNNLHILQTFSDLGIELDIRFEDIDEKF
MRMIPHYANGMLDTAPLPPEIEINPFSTESPLKQVPIKRFNPDLFMILRT
MGLLRSLTETLNVETTDCWMSNLFRPYALRGIRRKGLSDYEKRSRSRAIR
SALTKGVPSPFDCQDEEYTEFCSIS*
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mRNA from alignment at tig00000860_pilon:983790..985868+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8963.t1 ID=Ggra8963.t1|Name=Ggra8963.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2079bp|location=Sequence derived from alignment at tig00000860_pilon:983790..985868+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCGCGCCGCTTCGCTCGCTGTTGCTGAGGAGAAGCGCGTCCAT
CCCGCGGGTGGCCCTCAATGCGCTGCGCGTTGTTCCTCTTCGCCGCGCGC
GCGTTCCTGTCGCCTTGGTCAACACGTCGCTGCTCGCGCTCACGCAGTCG
CTGTTAGCCAAGAAGCGATGGAACCTGTTTCAGGCGCTTATTTTGCTCTC
CGTGTCCAACATGCCGCTCATCGGCTTGTTGGCGCCCTTGTTTAAACCGT
TGTGTTTTACTTGGATGTATGCTTTGCTCTGCAGACTGTTTGCTCCGGCC
CATGTGCGAAGTCTCAGGTTCTGGAGACGAGTTATTCCCATCTATGTCTC
ATACAAGAAAACTCAGATGTCTCTCGCGGTGCAGAATGCTTCTGCTCAGC
AAAGAGCAAAGGCTTGGAGCAAGCGTCACCACTGGGCTGCCGAAAAGGTT
TGTTCTTTATCTTCTTCGTGTTTATTGTCACATCTGTACCCACTCACACT
CTTGCTTCTTTTTTTTTTATAGGTCTACAATCTTTGCGTCGAGCTTCGCG
GTTTCTACCTCAAGGATGGTACGTGTCAGTCTTTCTCCCTCGTTTTTTTT
TATACCGTGCCCATTTATGCTATGCGGTGTTGCTGACTTTGAACACAGGA
CAATTTCTGGGCGCCAGGAGTGACATCGTACCAATGGCGTGGTGTGATTC
GCTTCGTCGTTTACAAGATCGCGTTCCCCCCGTTCCATTTTCCCAGATCG
AGAGCACAATTCGCCAATCCTACAACGTCAACAAAGTCAGTCAAATATTC
AATCACCTAGATTCAAATCCGCTTGCGTCCGCCACCATTGCGCAGGTGCA
TCGAGGACAAATGCCAGACGGCACTCCAATCGTGTTGAAGACCCAGTACA
TTGATCAACAACGTCTCTGCGATATGGATCTGCTCAATCTAAAAAGACTC
GCGTCATACCTTCAGAAGCATGACATGTCGTTCTTTGACATGGATTCGGT
CGTCAAAGAGTTTGAAACACAGATTCCTGCCGAATTTGACTTTCTAAGAG
AGGCTGAAATGATGACCATCATTCGAAACAACCTGAGGCGCGCTGGCATT
TTTGACGTTGTCATACCCAAAGTGATAACGGGACTTGTTTCACGTCGAGC
TCTAACAATGACGTATGTAGATGGTGTTCGCCCGGACAATTCGCTCGCGT
TGAATCATTGGGGCATCAAACCGAAGCATGTGCTCAAGGCCGTTGGTAGG
GCGTTTGGACAGATGTTGTTGTGTGACGGCCTTGCACACTGTGACCGTAA
GTTGTGACAACATTCAATGGCGCATCGCATTCTTCTGAATACGTTTCACA
GGCTTCAAGCTTATGCTAACTGTTTTTGGCACAAAACTCGTATGCTCGTA
TTATCTTACACAGCTCATCTTGGAAACTGTAAGTGCCTTATTCTTTAGCT
CTTTATCGTCTTCGGATCTGACTGACTGTTCTCCTTGTTTATGTTGTGCT
GTTCAAGTGATCATCATGAGGGACGGAAAGGTGGCGCTTATTGATTTTGG
TCAGGCCAAGGAGATTCCTGAAGATTTGCGGAAGAAGCTTTGTGCCTTCT
ACCTGGCTGTCAACTCAAAGAACAATCTGCACATCCTCCAGACCTTTTCG
GACCTTGGAATTGAGCTTGACATTCGTTTCGAAGATATTGATGAAAAGTT
CATGCGCATGATTCCGCATTACGCGAACGGAATGCTTGATACGGCTCCTC
TACCGCCGGAGATCGAAATCAACCCGTTTTCTACGGAGAGCCCGCTGAAG
CAAGTGCCAATCAAGAGATTTAATCCCGATCTGTTTATGATTCTGCGTAC
GATGGGCCTTTTGAGATCACTGACGGAGACTTTGAACGTTGAAACAACCG
ACTGCTGGATGTCTAACCTGTTTAGACCGTATGCATTGCGCGGAATACGT
CGCAAAGGTCTGTCTGATTACGAGAAGCGGAGTCGATCCAGGGCAATCAG
ATCTGCTTTGACGAAGGGCGTGCCCTCACCTTTTGACTGCCAAGATGAGG
AGTACACCGAGTTTTGTTCCATCTCGTGA
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Coding sequence (CDS) from alignment at tig00000860_pilon:983790..985868+

>Ggra8963.t1 ID=Ggra8963.t1|Name=Ggra8963.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1728bp|location=Sequence derived from alignment at tig00000860_pilon:983790..985868+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCGCGCCGCTTCGCTCGCTGTTGCTGAGGAGAAGCGCGTCCAT
CCCGCGGGTGGCCCTCAATGCGCTGCGCGTTGTTCCTCTTCGCCGCGCGC
GCGTTCCTGTCGCCTTGGTCAACACGTCGCTGCTCGCGCTCACGCAGTCG
CTGTTAGCCAAGAAGCGATGGAACCTGTTTCAGGCGCTTATTTTGCTCTC
CGTGTCCAACATGCCGCTCATCGGCTTGTTGGCGCCCTTGTTTAAACCGT
TGTGTTTTACTTGGATGTATGCTTTGCTCTGCAGACTGTTTGCTCCGGCC
CATGTGCGAAGTCTCAGGTTCTGGAGACGAGTTATTCCCATCTATGTCTC
ATACAAGAAAACTCAGATGTCTCTCGCGGTGCAGAATGCTTCTGCTCAGC
AAAGAGCAAAGGCTTGGAGCAAGCGTCACCACTGGGCTGCCGAAAAGGTC
TACAATCTTTGCGTCGAGCTTCGCGGTTTCTACCTCAAGGATGGACAATT
TCTGGGCGCCAGGAGTGACATCGTACCAATGGCGTGGTGTGATTCGCTTC
GTCGTTTACAAGATCGCGTTCCCCCCGTTCCATTTTCCCAGATCGAGAGC
ACAATTCGCCAATCCTACAACGTCAACAAAGTCAGTCAAATATTCAATCA
CCTAGATTCAAATCCGCTTGCGTCCGCCACCATTGCGCAGGTGCATCGAG
GACAAATGCCAGACGGCACTCCAATCGTGTTGAAGACCCAGTACATTGAT
CAACAACGTCTCTGCGATATGGATCTGCTCAATCTAAAAAGACTCGCGTC
ATACCTTCAGAAGCATGACATGTCGTTCTTTGACATGGATTCGGTCGTCA
AAGAGTTTGAAACACAGATTCCTGCCGAATTTGACTTTCTAAGAGAGGCT
GAAATGATGACCATCATTCGAAACAACCTGAGGCGCGCTGGCATTTTTGA
CGTTGTCATACCCAAAGTGATAACGGGACTTGTTTCACGTCGAGCTCTAA
CAATGACGTATGTAGATGGTGTTCGCCCGGACAATTCGCTCGCGTTGAAT
CATTGGGGCATCAAACCGAAGCATGTGCTCAAGGCCGTTGGTAGGGCGTT
TGGACAGATGTTGTTGTGTGACGGCCTTGCACACTGTGACCCTCATCTTG
GAAACTTGATCATCATGAGGGACGGAAAGGTGGCGCTTATTGATTTTGGT
CAGGCCAAGGAGATTCCTGAAGATTTGCGGAAGAAGCTTTGTGCCTTCTA
CCTGGCTGTCAACTCAAAGAACAATCTGCACATCCTCCAGACCTTTTCGG
ACCTTGGAATTGAGCTTGACATTCGTTTCGAAGATATTGATGAAAAGTTC
ATGCGCATGATTCCGCATTACGCGAACGGAATGCTTGATACGGCTCCTCT
ACCGCCGGAGATCGAAATCAACCCGTTTTCTACGGAGAGCCCGCTGAAGC
AAGTGCCAATCAAGAGATTTAATCCCGATCTGTTTATGATTCTGCGTACG
ATGGGCCTTTTGAGATCACTGACGGAGACTTTGAACGTTGAAACAACCGA
CTGCTGGATGTCTAACCTGTTTAGACCGTATGCATTGCGCGGAATACGTC
GCAAAGGTCTGTCTGATTACGAGAAGCGGAGTCGATCCAGGGCAATCAGA
TCTGCTTTGACGAAGGGCGTGCCCTCACCTTTTGACTGCCAAGATGAGGA
GTACACCGAGTTTTGTTCCATCTCGTGA
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