Ggra8952.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8952.t1
Unique Name	Ggra8952.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:960846..962297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000021133
Max annot lvl	121069\|Pythiales
Evalue	1.96e-09
EggNOG OGs	2E9IX@1\|root,2SFWJ@2759\|Eukaryota,1MDY8@121069\|Pythiales
Description	function. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8952	Ggra8952	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 960846..962297 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8952.t1.start1	Ggra8952.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 960846..960848 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8952.t1.CDS1	Ggra8952.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 960846..962297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8952.t1.exon1	Ggra8952.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 960846..962297 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8952.t1.stop1	Ggra8952.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 962295..962297 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8952.t1	Ggra8952.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 960846..962297 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:960846..962297+
coding sequence from alignment at tig00000860_pilon:960846..962297+

mRNA sequence

>Ggra8952.t1 ID=Ggra8952.t1|Name=Ggra8952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=484bp
MAGGRRPSSYVSGARHGSAIDRQFVQEANASPPLTSTTGPSLPPWIPSIW
QPAPMQSPTPRAVRDKHTTVDPSSVLAAALDTAVQSAVERALGAAPPATS
TSQLTVSSSNSENSAEDESSQPLTQRENELLDLVAALKERLQQRDDDIAS
LQHRMSSLENSLQRHQTSTQTHHQRLESATTNLAKHMSATFSVSDARLED
RLTAIKDQIASTQKSVCRLPNHSADIAHLYSRSRQLTSELFNTRTHFITE
FEKYASKMKQFEQSFKTISDRLSSVAADASASNPDVEQLRRSVESATESL
ATVRSKLKRVETQVGEVSKQAEDSVALSGAFEESIRAGLDDITKTVSSLH
CTVREIKKNLPPNPDDTDTSSKNGLTSKVDSLETNLKALKRLIESNLRTQ
WSAESIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPEYAD
NDDQFVLVREEDLEGNESVGIHRSSREPSSGDS*

spliced messenger RNA

>Ggra8952.t1 ID=Ggra8952.t1|Name=Ggra8952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000860_pilon:960846..962297+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGTGGCCGTCGCCCGTCTAGCTACGTCTCCGGCGCGCGACACGG
CTCGGCAATCGACCGCCAGTTCGTGCAGGAGGCGAATGCCAGTCCACCTC
TAACCTCCACCACCGGACCGTCGTTACCGCCTTGGATTCCGTCAATATGG
CAACCGGCGCCTATGCAATCCCCCACTCCGCGCGCCGTAAGGGACAAGCA
CACCACGGTGGACCCCTCCTCAGTACTTGCTGCCGCACTGGATACCGCCG
TTCAATCCGCCGTTGAACGCGCTTTGGGAGCTGCTCCGCCTGCTACTTCC
ACATCACAGCTTACTGTCTCCTCCTCTAACTCTGAGAACAGCGCTGAAGA
TGAGTCTTCTCAACCTCTCACGCAGCGCGAGAATGAACTGCTTGACCTCG
TTGCTGCGCTCAAGGAGCGCTTGCAACAACGTGATGATGACATTGCGTCT
TTGCAACACCGAATGAGCTCCCTAGAGAACAGTTTACAACGCCATCAAAC
CTCCACCCAAACCCATCACCAACGCCTTGAATCTGCTACCACCAACCTTG
CGAAGCACATGTCCGCCACTTTTTCGGTGTCGGACGCCCGTTTAGAGGAT
CGGTTGACTGCTATCAAGGATCAAATAGCATCTACCCAAAAGTCGGTGTG
TAGATTACCGAACCATAGCGCCGATATTGCTCATCTTTACTCTCGTTCTC
GACAACTCACTTCCGAGCTTTTCAACACTCGCACACACTTCATCACGGAG
TTTGAGAAGTATGCTTCAAAAATGAAGCAATTCGAACAGTCTTTCAAAAC
TATATCTGATCGATTAAGCTCTGTTGCCGCTGATGCCTCAGCGTCCAATC
CGGACGTTGAACAATTACGAAGAAGCGTGGAGTCTGCGACGGAGAGTTTG
GCCACCGTGCGTTCCAAGCTGAAGAGAGTAGAAACACAGGTTGGAGAGGT
TTCGAAACAAGCCGAAGATTCTGTGGCGCTTAGCGGTGCGTTTGAAGAAA
GTATTCGGGCGGGGCTCGACGATATTACGAAAACTGTTTCATCTCTGCAT
TGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCAAACCCAGATGATAC
AGACACAAGTTCAAAGAATGGGCTGACGTCCAAGGTTGATTCTCTTGAAA
CGAATCTCAAAGCGCTCAAGCGATTGATTGAATCGAATCTTCGGACGCAA
TGGAGTGCGGAGAGTATAGTTAAGGAACAGGTCTCTCTCATCACCAAACA
CGTATGCGTTGCAATGCGACAATATACTGCTCGTCGTATATCTGAAAACA
ATGCGTTAATAGATAAGGCTTTGCGTGCGCGAATTCCGGAGTACGCAGAC
AATGATGATCAGTTTGTATTAGTGCGGGAAGAAGACTTAGAGGGAAATGA
ATCTGTTGGTATTCATAGATCATCACGCGAACCAAGTTCAGGAGATTCGT
AG

protein sequence of Ggra8952.t1

>Ggra8952.t1 ID=Ggra8952.t1|Name=Ggra8952.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=484bp
MAGGRRPSSYVSGARHGSAIDRQFVQEANASPPLTSTTGPSLPPWIPSIW
QPAPMQSPTPRAVRDKHTTVDPSSVLAAALDTAVQSAVERALGAAPPATS
TSQLTVSSSNSENSAEDESSQPLTQRENELLDLVAALKERLQQRDDDIAS
LQHRMSSLENSLQRHQTSTQTHHQRLESATTNLAKHMSATFSVSDARLED
RLTAIKDQIASTQKSVCRLPNHSADIAHLYSRSRQLTSELFNTRTHFITE
FEKYASKMKQFEQSFKTISDRLSSVAADASASNPDVEQLRRSVESATESL
ATVRSKLKRVETQVGEVSKQAEDSVALSGAFEESIRAGLDDITKTVSSLH
CTVREIKKNLPPNPDDTDTSSKNGLTSKVDSLETNLKALKRLIESNLRTQ
WSAESIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPEYAD
NDDQFVLVREEDLEGNESVGIHRSSREPSSGDS*

mRNA from alignment at tig00000860_pilon:960846..962297+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8952.t1 ID=Ggra8952.t1|Name=Ggra8952.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00000860_pilon:960846..962297+ (Gracilaria gracilis GNS1m male)
ATGGCCGGTGGCCGTCGCCCGTCTAGCTACGTCTCCGGCGCGCGACACGG
CTCGGCAATCGACCGCCAGTTCGTGCAGGAGGCGAATGCCAGTCCACCTC
TAACCTCCACCACCGGACCGTCGTTACCGCCTTGGATTCCGTCAATATGG
CAACCGGCGCCTATGCAATCCCCCACTCCGCGCGCCGTAAGGGACAAGCA
CACCACGGTGGACCCCTCCTCAGTACTTGCTGCCGCACTGGATACCGCCG
TTCAATCCGCCGTTGAACGCGCTTTGGGAGCTGCTCCGCCTGCTACTTCC
ACATCACAGCTTACTGTCTCCTCCTCTAACTCTGAGAACAGCGCTGAAGA
TGAGTCTTCTCAACCTCTCACGCAGCGCGAGAATGAACTGCTTGACCTCG
TTGCTGCGCTCAAGGAGCGCTTGCAACAACGTGATGATGACATTGCGTCT
TTGCAACACCGAATGAGCTCCCTAGAGAACAGTTTACAACGCCATCAAAC
CTCCACCCAAACCCATCACCAACGCCTTGAATCTGCTACCACCAACCTTG
CGAAGCACATGTCCGCCACTTTTTCGGTGTCGGACGCCCGTTTAGAGGAT
CGGTTGACTGCTATCAAGGATCAAATAGCATCTACCCAAAAGTCGGTGTG
TAGATTACCGAACCATAGCGCCGATATTGCTCATCTTTACTCTCGTTCTC
GACAACTCACTTCCGAGCTTTTCAACACTCGCACACACTTCATCACGGAG
TTTGAGAAGTATGCTTCAAAAATGAAGCAATTCGAACAGTCTTTCAAAAC
TATATCTGATCGATTAAGCTCTGTTGCCGCTGATGCCTCAGCGTCCAATC
CGGACGTTGAACAATTACGAAGAAGCGTGGAGTCTGCGACGGAGAGTTTG
GCCACCGTGCGTTCCAAGCTGAAGAGAGTAGAAACACAGGTTGGAGAGGT
TTCGAAACAAGCCGAAGATTCTGTGGCGCTTAGCGGTGCGTTTGAAGAAA
GTATTCGGGCGGGGCTCGACGATATTACGAAAACTGTTTCATCTCTGCAT
TGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCAAACCCAGATGATAC
AGACACAAGTTCAAAGAATGGGCTGACGTCCAAGGTTGATTCTCTTGAAA
CGAATCTCAAAGCGCTCAAGCGATTGATTGAATCGAATCTTCGGACGCAA
TGGAGTGCGGAGAGTATAGTTAAGGAACAGGTCTCTCTCATCACCAAACA
CGTATGCGTTGCAATGCGACAATATACTGCTCGTCGTATATCTGAAAACA
ATGCGTTAATAGATAAGGCTTTGCGTGCGCGAATTCCGGAGTACGCAGAC
AATGATGATCAGTTTGTATTAGTGCGGGAAGAAGACTTAGAGGGAAATGA
ATCTGTTGGTATTCATAGATCATCACGCGAACCAAGTTCAGGAGATTCGT
AG

Coding sequence (CDS) from alignment at tig00000860_pilon:960846..962297+

>Ggra8952.t1 ID=Ggra8952.t1|Name=Ggra8952.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00000860_pilon:960846..962297+ (Gracilaria gracilis GNS1m male)
ATGGCCGGTGGCCGTCGCCCGTCTAGCTACGTCTCCGGCGCGCGACACGG
CTCGGCAATCGACCGCCAGTTCGTGCAGGAGGCGAATGCCAGTCCACCTC
TAACCTCCACCACCGGACCGTCGTTACCGCCTTGGATTCCGTCAATATGG
CAACCGGCGCCTATGCAATCCCCCACTCCGCGCGCCGTAAGGGACAAGCA
CACCACGGTGGACCCCTCCTCAGTACTTGCTGCCGCACTGGATACCGCCG
TTCAATCCGCCGTTGAACGCGCTTTGGGAGCTGCTCCGCCTGCTACTTCC
ACATCACAGCTTACTGTCTCCTCCTCTAACTCTGAGAACAGCGCTGAAGA
TGAGTCTTCTCAACCTCTCACGCAGCGCGAGAATGAACTGCTTGACCTCG
TTGCTGCGCTCAAGGAGCGCTTGCAACAACGTGATGATGACATTGCGTCT
TTGCAACACCGAATGAGCTCCCTAGAGAACAGTTTACAACGCCATCAAAC
CTCCACCCAAACCCATCACCAACGCCTTGAATCTGCTACCACCAACCTTG
CGAAGCACATGTCCGCCACTTTTTCGGTGTCGGACGCCCGTTTAGAGGAT
CGGTTGACTGCTATCAAGGATCAAATAGCATCTACCCAAAAGTCGGTGTG
TAGATTACCGAACCATAGCGCCGATATTGCTCATCTTTACTCTCGTTCTC
GACAACTCACTTCCGAGCTTTTCAACACTCGCACACACTTCATCACGGAG
TTTGAGAAGTATGCTTCAAAAATGAAGCAATTCGAACAGTCTTTCAAAAC
TATATCTGATCGATTAAGCTCTGTTGCCGCTGATGCCTCAGCGTCCAATC
CGGACGTTGAACAATTACGAAGAAGCGTGGAGTCTGCGACGGAGAGTTTG
GCCACCGTGCGTTCCAAGCTGAAGAGAGTAGAAACACAGGTTGGAGAGGT
TTCGAAACAAGCCGAAGATTCTGTGGCGCTTAGCGGTGCGTTTGAAGAAA
GTATTCGGGCGGGGCTCGACGATATTACGAAAACTGTTTCATCTCTGCAT
TGTACAGTAAGGGAGATAAAGAAAAACCTTCCGCCAAACCCAGATGATAC
AGACACAAGTTCAAAGAATGGGCTGACGTCCAAGGTTGATTCTCTTGAAA
CGAATCTCAAAGCGCTCAAGCGATTGATTGAATCGAATCTTCGGACGCAA
TGGAGTGCGGAGAGTATAGTTAAGGAACAGGTCTCTCTCATCACCAAACA
CGTATGCGTTGCAATGCGACAATATACTGCTCGTCGTATATCTGAAAACA
ATGCGTTAATAGATAAGGCTTTGCGTGCGCGAATTCCGGAGTACGCAGAC
AATGATGATCAGTTTGTATTAGTGCGGGAAGAAGACTTAGAGGGAAATGA
ATCTGTTGGTATTCATAGATCATCACGCGAACCAAGTTCAGGAGATTCGT
AG