Ggra8950.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8950.t1
Unique NameGgra8950.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:955173..955982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707306.1
Preferred nameUBE2G1
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG koko:K02207,ko:K02331,ko:K10575
KEGG Pathwayko04120,ko04141,ko05012,ko05168,map04120,map04141,map05012,map05168
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0032446,GO:0033043,GO:0033044,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051603,GO:0060255,GO:0060968,GO:0060969,GO:0061186,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0080090,GO:0090054,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:1905268,GO:2000112,GO:2001141,GO:2001251
Evalue2.33e-91
EggNOG OGsCOG5078@1|root,KOG0425@2759|Eukaryota
EC2.3.2.23,2.7.7.7
Descriptionprotein polyubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03036,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8950Ggra8950Gracilaria gracilis GNS1m malegenetig00000860_pilon 955173..955982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1Ggra8950.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 955173..955982 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1.stop1Ggra8950.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 955173..955175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1.CDS1Ggra8950.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 955173..955429 -
Ggra8950.t1.CDS2Ggra8950.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 955521..955618 -
Ggra8950.t1.CDS3Ggra8950.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 955715..955817 -
Ggra8950.t1.CDS4Ggra8950.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 955934..955982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1.exon1Ggra8950.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 955173..955429 -
Ggra8950.t1.exon2Ggra8950.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 955521..955618 -
Ggra8950.t1.exon3Ggra8950.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 955715..955817 -
Ggra8950.t1.exon4Ggra8950.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 955934..955982 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1.intron1Ggra8950.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 955430..955520 -
Ggra8950.t1.intron2Ggra8950.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 955619..955714 -
Ggra8950.t1.intron3Ggra8950.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 955818..955933 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8950.t1.start1Ggra8950.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 955980..955982 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8950.t1 ID=Ggra8950.t1|Name=Ggra8950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MASNSQAAMLLMRQLKELNKNIDSGFSAGLVDDSNPFEWQVILTGPPDTW
YEGGLFKAKLSFPPEYPYMPPTMRFISDMWHPNIYKDGKVCISILHAPGS
DPNQYENASERWLPVHTVESILVSVISMLSCPNDESAANLDAAKEWRETP
EIFKKKVRETVRRAQEDL*
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spliced messenger RNA

>Ggra8950.t1 ID=Ggra8950.t1|Name=Ggra8950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000860_pilon:955173..955982- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGAATAGCCAAGCAGCCATGCTGCTCATGCGTCAGCTCAAAGA
GCTCAATAAGAATATCGATTCCGGCTTCTCTGCGGGTCTTGTTGACGACT
CCAACCCTTTTGAATGGCAAGTCATTCTAACCGGACCGCCAGACACTTGG
TATGAGGGAGGTCTCTTCAAGGCCAAGCTTTCTTTTCCTCCCGAATACCC
GTACATGCCACCAACAATGCGCTTCATATCCGACATGTGGCACCCAAACA
TTTATAAGGATGGCAAAGTTTGCATTTCTATACTGCATGCACCCGGTTCG
GATCCCAATCAGTACGAGAATGCGTCAGAAAGATGGCTCCCGGTGCACAC
AGTGGAGTCTATTCTTGTTTCTGTAATCTCCATGCTATCTTGCCCTAACG
ACGAAAGCGCTGCCAATCTCGATGCTGCGAAAGAATGGAGAGAGACTCCT
GAAATATTCAAGAAGAAAGTTCGCGAAACAGTAAGACGTGCTCAAGAGGA
CCTGTAA
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protein sequence of Ggra8950.t1

>Ggra8950.t1 ID=Ggra8950.t1|Name=Ggra8950.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MASNSQAAMLLMRQLKELNKNIDSGFSAGLVDDSNPFEWQVILTGPPDTW
YEGGLFKAKLSFPPEYPYMPPTMRFISDMWHPNIYKDGKVCISILHAPGS
DPNQYENASERWLPVHTVESILVSVISMLSCPNDESAANLDAAKEWRETP
EIFKKKVRETVRRAQEDL*
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mRNA from alignment at tig00000860_pilon:955173..955982-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8950.t1 ID=Ggra8950.t1|Name=Ggra8950.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000860_pilon:955173..955982- (Gracilaria gracilis GNS1m male)
ATGGCTTCGAATAGCCAAGCAGCCATGCTGCTCATGCGTCAGCTCAAAGG
TAATGCATCTCGTCCATCCCCGTACATCCGCCTCGCCGCGATATGCGCTT
TTCCGCTTTCTCATAAGCTAACCCGCTTATGCTTTTTTTCGCGCCGTTTT
CTTTGTCTTATCTAGAGCTCAATAAGAATATCGATTCCGGCTTCTCTGCG
GGTCTTGTTGACGACTCCAACCCTTTTGAATGGCAAGTCATTCTAACCGG
ACCGCCAGACACTTGGTAGTAAGTTTCGCGCCGATCACATCAATTGTTTG
CCTTGCCGCTCACCACGACATCTTGCTAACGCCGAAACCTAATTCTTTGC
TATTCGTCATGAAGTGAGGGAGGTCTCTTCAAGGCCAAGCTTTCTTTTCC
TCCCGAATACCCGTACATGCCACCAACAATGCGCTTCATATCCGACATGT
GGCACCCAAACAGTAAGTTGAGCTACTTGTATCTTTATTATTCGTTCTTT
TGTTTTTGTGACCTAACATCCGCCCTCCATGTTGTTTCCACGCGAATGTG
CAGTTTATAAGGATGGCAAAGTTTGCATTTCTATACTGCATGCACCCGGT
TCGGATCCCAATCAGTACGAGAATGCGTCAGAAAGATGGCTCCCGGTGCA
CACAGTGGAGTCTATTCTTGTTTCTGTAATCTCCATGCTATCTTGCCCTA
ACGACGAAAGCGCTGCCAATCTCGATGCTGCGAAAGAATGGAGAGAGACT
CCTGAAATATTCAAGAAGAAAGTTCGCGAAACAGTAAGACGTGCTCAAGA
GGACCTGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:955173..955982-

>Ggra8950.t1 ID=Ggra8950.t1|Name=Ggra8950.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000860_pilon:955173..955982- (Gracilaria gracilis GNS1m male)
ATGGCTTCGAATAGCCAAGCAGCCATGCTGCTCATGCGTCAGCTCAAAGA
GCTCAATAAGAATATCGATTCCGGCTTCTCTGCGGGTCTTGTTGACGACT
CCAACCCTTTTGAATGGCAAGTCATTCTAACCGGACCGCCAGACACTTGG
TATGAGGGAGGTCTCTTCAAGGCCAAGCTTTCTTTTCCTCCCGAATACCC
GTACATGCCACCAACAATGCGCTTCATATCCGACATGTGGCACCCAAACA
TTTATAAGGATGGCAAAGTTTGCATTTCTATACTGCATGCACCCGGTTCG
GATCCCAATCAGTACGAGAATGCGTCAGAAAGATGGCTCCCGGTGCACAC
AGTGGAGTCTATTCTTGTTTCTGTAATCTCCATGCTATCTTGCCCTAACG
ACGAAAGCGCTGCCAATCTCGATGCTGCGAAAGAATGGAGAGAGACTCCT
GAAATATTCAAGAAGAAAGTTCGCGAAACAGTAAGACGTGCTCAAGAGGA
CCTGTAA
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