Ggra895.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra895.t1
Unique NameGgra895.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:44324..45531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra895Ggra895Gracilaria gracilis GNS1m malegenetig00000049_pilon 44324..45531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1Ggra895.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 44324..45531 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1.start1Ggra895.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 44324..44326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1.CDS1Ggra895.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 44324..44558 +
Ggra895.t1.CDS2Ggra895.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000049_pilon 44636..44784 +
Ggra895.t1.CDS3Ggra895.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000049_pilon 44857..45531 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1.exon1Ggra895.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 44324..44558 +
Ggra895.t1.exon2Ggra895.t1.exon2Gracilaria gracilis GNS1m maleexontig00000049_pilon 44636..44784 +
Ggra895.t1.exon3Ggra895.t1.exon3Gracilaria gracilis GNS1m maleexontig00000049_pilon 44857..45531 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1.intron1Ggra895.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000049_pilon 44559..44635 +
Ggra895.t1.intron2Ggra895.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000049_pilon 44785..44856 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra895.t1.stop1Ggra895.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 45529..45531 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra895.t1 ID=Ggra895.t1|Name=Ggra895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MTRNKSSTYMGWKRFSVLNYFLFALACSTTFNRSRSIVIPHFRRPPANDE
TSAGSALTVAGLDHSRYSEKFGQELILGPPSPNSDLKTCGRSRNGTKTCS
KVVCEESLILSKATTVNGGRCICECCNGQEATCELSFTPVGSFLGCGCIG
RITEDKEDSFTTNEESSSETANLTTSDTQTEGTETVPDCVETSWLKQNGF
AHGILQERRSATLLCIPGLPCGTPGHLLRECDAAASKSCLLRTYENICQE
RDDCTHRWADVSRLKHSVDWSMVQAAGSKGSVIVLTSLSAHTREGRFSFS
YGLAYVAEWLNSAGLGDLCDVVVLLVLGLGDLGMRTKAVFGGLRAEWWGR
SA*
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spliced messenger RNA

>Ggra895.t1 ID=Ggra895.t1|Name=Ggra895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000049_pilon:44324..45531+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAGAAACAAATCATCAACCTATATGGGCTGGAAGCGATTCTCGGT
TCTCAACTACTTCCTCTTCGCTTTAGCCTGCTCCACAACTTTCAACCGTT
CCCGTAGCATCGTTATCCCACACTTTAGAAGACCGCCTGCTAACGATGAA
ACTTCCGCTGGATCCGCTCTAACTGTAGCTGGCTTGGACCACTCGAGGTA
CTCGGAGAAATTTGGACAGGAACTAATCTTGGGACCCCCGAGCCCAAACT
CCGACTTAAAAACCTGTGGCCGTTCTCGAAACGGAACCAAGACATGTTCA
AAAGTGGTCTGTGAAGAGTCCCTCATCTTATCAAAAGCTACGACCGTCAA
CGGTGGCCGTTGCATATGTGAATGTTGTAATGGGCAAGAGGCCACTTGCG
AGCTGTCTTTTACACCTGTCGGTTCTTTCTTAGGTTGTGGTTGCATCGGA
CGCATTACTGAAGATAAAGAAGATTCCTTCACAACAAACGAGGAATCCAG
CAGCGAGACGGCTAATTTGACTACTTCTGATACGCAAACGGAAGGAACGG
AAACCGTGCCCGACTGTGTGGAGACTTCTTGGCTAAAACAGAATGGTTTT
GCTCACGGAATTCTTCAGGAAAGACGTTCAGCAACCTTGCTATGCATTCC
AGGACTTCCTTGCGGTACGCCAGGACATTTGTTAAGAGAATGCGACGCTG
CCGCAAGTAAATCCTGTCTCTTGCGCACATACGAAAATATATGCCAAGAG
AGGGATGATTGTACACATCGATGGGCTGATGTGTCTCGTCTCAAACACTC
AGTGGACTGGAGTATGGTACAAGCTGCGGGGTCGAAAGGTAGTGTTATTG
TTCTAACCAGTTTAAGTGCGCATACGAGGGAGGGGCGGTTTTCATTCTCA
TATGGACTGGCGTATGTTGCCGAATGGCTGAATTCTGCAGGCTTAGGCGA
TCTTTGCGATGTTGTGGTACTTTTGGTGCTTGGTCTCGGAGATTTGGGAA
TGAGAACGAAAGCAGTATTCGGAGGACTCCGTGCAGAGTGGTGGGGTAGG
AGTGCCTAA
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protein sequence of Ggra895.t1

>Ggra895.t1 ID=Ggra895.t1|Name=Ggra895.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MTRNKSSTYMGWKRFSVLNYFLFALACSTTFNRSRSIVIPHFRRPPANDE
TSAGSALTVAGLDHSRYSEKFGQELILGPPSPNSDLKTCGRSRNGTKTCS
KVVCEESLILSKATTVNGGRCICECCNGQEATCELSFTPVGSFLGCGCIG
RITEDKEDSFTTNEESSSETANLTTSDTQTEGTETVPDCVETSWLKQNGF
AHGILQERRSATLLCIPGLPCGTPGHLLRECDAAASKSCLLRTYENICQE
RDDCTHRWADVSRLKHSVDWSMVQAAGSKGSVIVLTSLSAHTREGRFSFS
YGLAYVAEWLNSAGLGDLCDVVVLLVLGLGDLGMRTKAVFGGLRAEWWGR
SA*
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mRNA from alignment at tig00000049_pilon:44324..45531+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra895.t1 ID=Ggra895.t1|Name=Ggra895.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1208bp|location=Sequence derived from alignment at tig00000049_pilon:44324..45531+ (Gracilaria gracilis GNS1m male)
ATGACTAGAAACAAATCATCAACCTATATGGGCTGGAAGCGATTCTCGGT
TCTCAACTACTTCCTCTTCGCTTTAGCCTGCTCCACAACTTTCAACCGTT
CCCGTAGCATCGTTATCCCACACTTTAGAAGACCGCCTGCTAACGATGAA
ACTTCCGCTGGATCCGCTCTAACTGTAGCTGGCTTGGACCACTCGAGGTA
CTCGGAGAAATTTGGACAGGAACTAATCTTGGGACGTAAGTTATATCCAA
GCATTTGGCAACTGATTTCGTATGAGATTGACTTAAAAATGGCGCTATTT
CTTTCTTGTCAGCCCCGAGCCCAAACTCCGACTTAAAAACCTGTGGCCGT
TCTCGAAACGGAACCAAGACATGTTCAAAAGTGGTCTGTGAAGAGTCCCT
CATCTTATCAAAAGCTACGACCGTCAACGGTGGCCGTTGCATATGTGAAT
GTTGTAATGGGGTAAGTTTTTCGAGTTCGCTTGTACAAGATAAATGTAGA
AGCTAACCATGAACGTTTGATGATTTTTGGCAGCAAGAGGCCACTTGCGA
GCTGTCTTTTACACCTGTCGGTTCTTTCTTAGGTTGTGGTTGCATCGGAC
GCATTACTGAAGATAAAGAAGATTCCTTCACAACAAACGAGGAATCCAGC
AGCGAGACGGCTAATTTGACTACTTCTGATACGCAAACGGAAGGAACGGA
AACCGTGCCCGACTGTGTGGAGACTTCTTGGCTAAAACAGAATGGTTTTG
CTCACGGAATTCTTCAGGAAAGACGTTCAGCAACCTTGCTATGCATTCCA
GGACTTCCTTGCGGTACGCCAGGACATTTGTTAAGAGAATGCGACGCTGC
CGCAAGTAAATCCTGTCTCTTGCGCACATACGAAAATATATGCCAAGAGA
GGGATGATTGTACACATCGATGGGCTGATGTGTCTCGTCTCAAACACTCA
GTGGACTGGAGTATGGTACAAGCTGCGGGGTCGAAAGGTAGTGTTATTGT
TCTAACCAGTTTAAGTGCGCATACGAGGGAGGGGCGGTTTTCATTCTCAT
ATGGACTGGCGTATGTTGCCGAATGGCTGAATTCTGCAGGCTTAGGCGAT
CTTTGCGATGTTGTGGTACTTTTGGTGCTTGGTCTCGGAGATTTGGGAAT
GAGAACGAAAGCAGTATTCGGAGGACTCCGTGCAGAGTGGTGGGGTAGGA
GTGCCTAA
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Coding sequence (CDS) from alignment at tig00000049_pilon:44324..45531+

>Ggra895.t1 ID=Ggra895.t1|Name=Ggra895.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000049_pilon:44324..45531+ (Gracilaria gracilis GNS1m male)
ATGACTAGAAACAAATCATCAACCTATATGGGCTGGAAGCGATTCTCGGT
TCTCAACTACTTCCTCTTCGCTTTAGCCTGCTCCACAACTTTCAACCGTT
CCCGTAGCATCGTTATCCCACACTTTAGAAGACCGCCTGCTAACGATGAA
ACTTCCGCTGGATCCGCTCTAACTGTAGCTGGCTTGGACCACTCGAGGTA
CTCGGAGAAATTTGGACAGGAACTAATCTTGGGACCCCCGAGCCCAAACT
CCGACTTAAAAACCTGTGGCCGTTCTCGAAACGGAACCAAGACATGTTCA
AAAGTGGTCTGTGAAGAGTCCCTCATCTTATCAAAAGCTACGACCGTCAA
CGGTGGCCGTTGCATATGTGAATGTTGTAATGGGCAAGAGGCCACTTGCG
AGCTGTCTTTTACACCTGTCGGTTCTTTCTTAGGTTGTGGTTGCATCGGA
CGCATTACTGAAGATAAAGAAGATTCCTTCACAACAAACGAGGAATCCAG
CAGCGAGACGGCTAATTTGACTACTTCTGATACGCAAACGGAAGGAACGG
AAACCGTGCCCGACTGTGTGGAGACTTCTTGGCTAAAACAGAATGGTTTT
GCTCACGGAATTCTTCAGGAAAGACGTTCAGCAACCTTGCTATGCATTCC
AGGACTTCCTTGCGGTACGCCAGGACATTTGTTAAGAGAATGCGACGCTG
CCGCAAGTAAATCCTGTCTCTTGCGCACATACGAAAATATATGCCAAGAG
AGGGATGATTGTACACATCGATGGGCTGATGTGTCTCGTCTCAAACACTC
AGTGGACTGGAGTATGGTACAAGCTGCGGGGTCGAAAGGTAGTGTTATTG
TTCTAACCAGTTTAAGTGCGCATACGAGGGAGGGGCGGTTTTCATTCTCA
TATGGACTGGCGTATGTTGCCGAATGGCTGAATTCTGCAGGCTTAGGCGA
TCTTTGCGATGTTGTGGTACTTTTGGTGCTTGGTCTCGGAGATTTGGGAA
TGAGAACGAAAGCAGTATTCGGAGGACTCCGTGCAGAGTGGTGGGGTAGG
AGTGCCTAA
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