Ggra8939.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8939.t1
Unique NameGgra8939.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:871089..871946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8939Ggra8939Gracilaria gracilis GNS1m malegenetig00000860_pilon 871089..871946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1Ggra8939.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 871089..871946 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1.stop1Ggra8939.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 871089..871091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1.CDS1Ggra8939.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 871089..871432 -
Ggra8939.t1.CDS2Ggra8939.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000860_pilon 871530..871645 -
Ggra8939.t1.CDS3Ggra8939.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000860_pilon 871732..871832 -
Ggra8939.t1.CDS4Ggra8939.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000860_pilon 871944..871946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1.exon1Ggra8939.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 871089..871432 -
Ggra8939.t1.exon2Ggra8939.t1.exon2Gracilaria gracilis GNS1m maleexontig00000860_pilon 871530..871645 -
Ggra8939.t1.exon3Ggra8939.t1.exon3Gracilaria gracilis GNS1m maleexontig00000860_pilon 871732..871832 -
Ggra8939.t1.exon4Ggra8939.t1.exon4Gracilaria gracilis GNS1m maleexontig00000860_pilon 871944..871946 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1.intron1Ggra8939.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000860_pilon 871433..871529 -
Ggra8939.t1.intron2Ggra8939.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000860_pilon 871646..871731 -
Ggra8939.t1.intron3Ggra8939.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000860_pilon 871833..871943 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8939.t1.start1Ggra8939.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 871944..871946 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8939.t1 ID=Ggra8939.t1|Name=Ggra8939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MVVSEIVAATMIAVYGLRNSYRIVLRAERLVRRTIRRPAPIIEGYHSFPR
FFIRNVFRAGLEIAMRWEGRAKNAAQLAADARLRAKRTSQAVAHRIEDVR
QSAEDVRDRAKDQTRIMREKAARLRQRAEHAKDRAVAAKDKLIDMKEKVQ
ERVSPKTNSRKFFSDARSILPPERKPSPMVHTRISES*
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spliced messenger RNA

>Ggra8939.t1 ID=Ggra8939.t1|Name=Ggra8939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000860_pilon:871089..871946- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCTCAGAAATCGTCGCGGCGACTATGATCGCTGTATATGGTCT
CAGGAACAGTTACCGTATTGTTTTAAGAGCTGAGCGCCTTGTTCGACGCA
CAATCCGACGCCCCGCTCCCATTATCGAAGGATATCATTCATTTCCACGC
TTCTTTATCCGCAACGTTTTCCGTGCAGGATTAGAAATCGCCATGCGCTG
GGAAGGCCGAGCCAAAAATGCCGCCCAACTCGCTGCTGATGCCCGACTTC
GAGCCAAGCGCACATCACAGGCTGTTGCACATCGTATAGAAGATGTTCGT
CAAAGCGCGGAAGACGTTCGTGATCGCGCAAAGGACCAAACTCGTATTAT
GAGGGAGAAGGCCGCGCGATTACGCCAACGTGCTGAGCATGCAAAGGATC
GTGCCGTTGCTGCGAAAGACAAATTAATAGACATGAAGGAAAAAGTACAA
GAACGAGTATCACCTAAAACGAACTCAAGAAAGTTCTTCAGTGATGCACG
TTCCATTTTGCCACCGGAAAGGAAGCCATCGCCAATGGTGCATACCAGAA
TATCTGAATCTTAA
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protein sequence of Ggra8939.t1

>Ggra8939.t1 ID=Ggra8939.t1|Name=Ggra8939.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MVVSEIVAATMIAVYGLRNSYRIVLRAERLVRRTIRRPAPIIEGYHSFPR
FFIRNVFRAGLEIAMRWEGRAKNAAQLAADARLRAKRTSQAVAHRIEDVR
QSAEDVRDRAKDQTRIMREKAARLRQRAEHAKDRAVAAKDKLIDMKEKVQ
ERVSPKTNSRKFFSDARSILPPERKPSPMVHTRISES*
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mRNA from alignment at tig00000860_pilon:871089..871946-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8939.t1 ID=Ggra8939.t1|Name=Ggra8939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=858bp|location=Sequence derived from alignment at tig00000860_pilon:871089..871946- (Gracilaria gracilis GNS1m male)
ATGGTACGATCTACTTCAAGCTGATCAATACAAACATACCTCTCGGCTGA
CTTGCGACGAACACTATGTGCATATTCCTACCATGCGCGGTCGGTGTTGA
AATCCCTTCTGTAGGTCGTCTCAGAAATCGTCGCGGCGACTATGATCGCT
GTATATGGTCTCAGGAACAGTTACCGTATTGTTTTAAGAGCTGAGCGCCT
TGTTCGACGCACAATGTAAGTGCGTGCTTAACTGCTTCCCTGCTTCTGTT
TCATATACATACATCTGTCTAACCCAAGAAACGCTTCCCTTCCGCCCGCA
GCCGACGCCCCGCTCCCATTATCGAAGGATATCATTCATTTCCACGCTTC
TTTATCCGCAACGTTTTCCGTGCAGGATTAGAAATCGCCATGCGCTGGGA
AGGCCGAGCCAAAAATGGTACGTTTCGTAGACATGTTTTGGCGTAGAATA
GTTCATATGCTGTGACTCATATTCATTGACATCCCATGCTCTTCTTGTTT
CTCATTCGGACTAGCCGCCCAACTCGCTGCTGATGCCCGACTTCGAGCCA
AGCGCACATCACAGGCTGTTGCACATCGTATAGAAGATGTTCGTCAAAGC
GCGGAAGACGTTCGTGATCGCGCAAAGGACCAAACTCGTATTATGAGGGA
GAAGGCCGCGCGATTACGCCAACGTGCTGAGCATGCAAAGGATCGTGCCG
TTGCTGCGAAAGACAAATTAATAGACATGAAGGAAAAAGTACAAGAACGA
GTATCACCTAAAACGAACTCAAGAAAGTTCTTCAGTGATGCACGTTCCAT
TTTGCCACCGGAAAGGAAGCCATCGCCAATGGTGCATACCAGAATATCTG
AATCTTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:871089..871946-

>Ggra8939.t1 ID=Ggra8939.t1|Name=Ggra8939.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000860_pilon:871089..871946- (Gracilaria gracilis GNS1m male)
ATGGTCGTCTCAGAAATCGTCGCGGCGACTATGATCGCTGTATATGGTCT
CAGGAACAGTTACCGTATTGTTTTAAGAGCTGAGCGCCTTGTTCGACGCA
CAATCCGACGCCCCGCTCCCATTATCGAAGGATATCATTCATTTCCACGC
TTCTTTATCCGCAACGTTTTCCGTGCAGGATTAGAAATCGCCATGCGCTG
GGAAGGCCGAGCCAAAAATGCCGCCCAACTCGCTGCTGATGCCCGACTTC
GAGCCAAGCGCACATCACAGGCTGTTGCACATCGTATAGAAGATGTTCGT
CAAAGCGCGGAAGACGTTCGTGATCGCGCAAAGGACCAAACTCGTATTAT
GAGGGAGAAGGCCGCGCGATTACGCCAACGTGCTGAGCATGCAAAGGATC
GTGCCGTTGCTGCGAAAGACAAATTAATAGACATGAAGGAAAAAGTACAA
GAACGAGTATCACCTAAAACGAACTCAAGAAAGTTCTTCAGTGATGCACG
TTCCATTTTGCCACCGGAAAGGAAGCCATCGCCAATGGTGCATACCAGAA
TATCTGAATCTTAA
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