Ggra8927.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8927.t1
Unique Name	Ggra8927.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	783

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:835797..838145 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8927	Ggra8927	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 835797..838145 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8927.t1.stop1	Ggra8927.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 835797..835799 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8927.t1.CDS1	Ggra8927.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 835797..838145 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8927.t1.exon1	Ggra8927.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 835797..838145 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8927.t1.start1	Ggra8927.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 838143..838145 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8927.t1	Ggra8927.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 835797..838145 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:835797..838145-
coding sequence from alignment at tig00000860_pilon:835797..838145-

mRNA sequence

>Ggra8927.t1 ID=Ggra8927.t1|Name=Ggra8927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp
MASNSGEDHWLWEGKGTPDEKQERRRVFYKSIVLKYGEDGSTRQYNVGDT
VNMAGGEDIWVAQIIDLFQVNAHDPELRQLLRTDSLKNESKHHYELKRCT
LRWFYNFMDMNRHSLRNAKWPKFLEDEIWYSDHIERPGYNSVQVIDGRAW
LFDNMREKNEFLANPPEDYDEERDIIRIVRGFVDSKRDHLPVRLLLDGEL
KWLQTNPSDDKDLYSNSKARFEQRSESPATQKRPKHRRTSLREPVNVDED
EFDPADVKPKSQKRRHRAPHAKAVPEVSTPPRRQFRRRKVTIDEDEESPM
QDIEDDPNDNIPLSQLRPSTSRPKPPEQPPEQPTDIDKLNVEVRDLVNSL
NASAFADDGPEPSAKPPEQSETKTSRPYVPVDEDEITPAPPKLKSQRKPL
VQKGKSKTAVAPRSKKRPAKPSPPVNNEDAIIIIDSDEEEPQPKVQPQRS
PPKLQRFHPGAANRAYRGGRHGKPSTRNRSSFMPTSRENASTPSKKQSDP
QRDDPKRGPSGSGVDTAPRAKRVHKSKSSKDTKAEAQSRPKEGKGAFVKE
SRNFSAAVRNNSFDHSDEITPVNGSRGSTEGRGTKRVAADDIGHHQNLAK
RRSLGPAVKTPKPPEPRPDKVQAAGRSADNRKEAVAKTPTDKNPGSKLRE
RPGARKVVSDNVIDVNDSDTEPDDRRLQEDGPSVLKVTQDQRKLTDNVYR
IHGRMNAADKDFLANELEWLINEVVLFHDGQKGSFNEEEYGRVLRDQLVQ
KRERQIGSLREVPVFASDSHPKIREPKVRERD*

spliced messenger RNA

>Ggra8927.t1 ID=Ggra8927.t1|Name=Ggra8927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2349bp|location=Sequence derived from alignment at tig00000860_pilon:835797..838145- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGAATTCAGGCGAAGATCATTGGCTTTGGGAGGGGAAGGGCAC
ACCGGATGAAAAACAGGAACGCCGAAGGGTTTTTTACAAGTCTATCGTTT
TGAAGTACGGCGAAGATGGTAGCACGCGCCAGTATAATGTTGGAGATACT
GTCAATATGGCTGGTGGTGAAGATATATGGGTCGCACAGATTATAGACCT
TTTCCAGGTCAATGCCCATGACCCAGAGCTTCGTCAACTCTTGCGAACGG
ACAGCCTAAAGAACGAATCCAAACATCATTATGAGCTTAAAAGGTGTACC
TTGCGATGGTTCTACAACTTCATGGATATGAACCGCCATAGTTTGAGGAA
CGCCAAGTGGCCCAAATTTCTGGAGGATGAGATTTGGTACTCGGATCACA
TCGAAAGGCCTGGCTACAACAGCGTGCAAGTTATCGACGGAAGGGCCTGG
CTTTTCGATAATATGCGTGAGAAAAATGAATTTCTCGCAAACCCACCCGA
AGACTATGACGAAGAAAGGGACATCATTCGCATTGTGCGTGGTTTTGTTG
ACTCAAAACGTGATCATTTGCCCGTTCGCCTACTTCTTGACGGCGAGTTG
AAATGGCTGCAGACCAATCCGTCAGATGACAAGGATTTGTATTCTAATTC
CAAAGCTCGTTTTGAACAGCGTTCGGAATCCCCCGCAACGCAGAAGCGGC
CTAAGCATCGGCGCACATCACTCCGTGAACCCGTCAACGTTGACGAAGAC
GAGTTTGATCCAGCAGATGTAAAACCCAAGAGTCAGAAAAGAAGACATCG
AGCGCCTCATGCGAAAGCTGTACCAGAGGTCTCTACCCCGCCCAGGCGTC
AATTTCGAAGAAGAAAAGTGACAATCGATGAGGATGAAGAGTCCCCAATG
CAGGATATAGAAGATGACCCGAACGATAACATCCCACTCTCCCAACTTCG
GCCTAGTACCTCCCGTCCTAAACCCCCTGAGCAACCCCCTGAGCAACCAA
CGGACATTGATAAACTCAATGTGGAAGTGCGGGATCTTGTAAATAGTCTT
AATGCTTCTGCTTTTGCAGATGATGGCCCTGAACCGTCAGCAAAACCGCC
TGAGCAGTCGGAAACAAAAACATCACGACCTTATGTACCAGTGGACGAAG
ACGAAATAACTCCAGCTCCCCCCAAGCTGAAATCACAGCGGAAGCCGTTG
GTTCAGAAAGGGAAAAGCAAGACCGCAGTCGCCCCGAGGTCGAAGAAGCG
TCCTGCGAAGCCAAGCCCTCCAGTGAACAATGAAGACGCAATAATTATAA
TCGACAGTGACGAAGAAGAGCCACAACCAAAGGTCCAACCGCAACGGAGC
CCACCCAAGCTACAGCGGTTTCACCCAGGAGCTGCTAATCGCGCGTACAG
GGGAGGAAGGCATGGAAAGCCATCAACGAGGAATCGCTCGTCTTTCATGC
CTACATCGAGAGAAAACGCAAGCACTCCTTCCAAGAAGCAAAGTGATCCT
CAACGAGATGATCCTAAGAGAGGTCCCTCTGGATCTGGTGTCGATACAGC
CCCGCGAGCAAAACGGGTCCATAAATCGAAGAGCTCTAAGGATACAAAAG
CGGAAGCCCAAAGTCGCCCCAAGGAAGGAAAAGGCGCTTTCGTGAAAGAA
AGTCGCAATTTCAGTGCGGCTGTGCGGAACAATAGTTTCGACCACAGTGA
CGAAATCACTCCTGTAAATGGTTCAAGAGGGAGCACCGAAGGACGAGGAA
CAAAACGGGTTGCGGCAGATGACATTGGTCATCATCAAAATCTGGCTAAA
CGCCGGTCGCTAGGGCCTGCCGTCAAAACGCCAAAACCCCCAGAGCCACG
TCCTGATAAAGTACAAGCTGCTGGACGCTCCGCGGATAATAGGAAGGAAG
CCGTCGCCAAGACTCCGACAGACAAGAATCCTGGAAGCAAACTTCGCGAA
AGACCGGGAGCGAGAAAGGTTGTCTCAGACAACGTCATAGATGTAAACGA
CAGTGACACGGAGCCAGATGACAGACGGCTACAAGAAGATGGTCCTTCTG
TGCTCAAGGTCACACAGGATCAACGAAAGCTCACAGATAATGTGTATCGG
ATCCATGGCCGCATGAACGCTGCTGACAAAGACTTTCTGGCCAACGAACT
GGAATGGCTCATTAACGAGGTCGTTCTCTTTCATGACGGGCAGAAAGGTT
CCTTCAACGAAGAGGAATACGGAAGGGTTCTTCGTGATCAGCTCGTTCAG
AAACGTGAAAGACAAATCGGTTCCCTGCGTGAGGTCCCAGTTTTCGCGAG
TGATTCTCATCCGAAAATACGAGAGCCGAAAGTGAGAGAACGGGATTGA

protein sequence of Ggra8927.t1

>Ggra8927.t1 ID=Ggra8927.t1|Name=Ggra8927.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=783bp
MASNSGEDHWLWEGKGTPDEKQERRRVFYKSIVLKYGEDGSTRQYNVGDT
VNMAGGEDIWVAQIIDLFQVNAHDPELRQLLRTDSLKNESKHHYELKRCT
LRWFYNFMDMNRHSLRNAKWPKFLEDEIWYSDHIERPGYNSVQVIDGRAW
LFDNMREKNEFLANPPEDYDEERDIIRIVRGFVDSKRDHLPVRLLLDGEL
KWLQTNPSDDKDLYSNSKARFEQRSESPATQKRPKHRRTSLREPVNVDED
EFDPADVKPKSQKRRHRAPHAKAVPEVSTPPRRQFRRRKVTIDEDEESPM
QDIEDDPNDNIPLSQLRPSTSRPKPPEQPPEQPTDIDKLNVEVRDLVNSL
NASAFADDGPEPSAKPPEQSETKTSRPYVPVDEDEITPAPPKLKSQRKPL
VQKGKSKTAVAPRSKKRPAKPSPPVNNEDAIIIIDSDEEEPQPKVQPQRS
PPKLQRFHPGAANRAYRGGRHGKPSTRNRSSFMPTSRENASTPSKKQSDP
QRDDPKRGPSGSGVDTAPRAKRVHKSKSSKDTKAEAQSRPKEGKGAFVKE
SRNFSAAVRNNSFDHSDEITPVNGSRGSTEGRGTKRVAADDIGHHQNLAK
RRSLGPAVKTPKPPEPRPDKVQAAGRSADNRKEAVAKTPTDKNPGSKLRE
RPGARKVVSDNVIDVNDSDTEPDDRRLQEDGPSVLKVTQDQRKLTDNVYR
IHGRMNAADKDFLANELEWLINEVVLFHDGQKGSFNEEEYGRVLRDQLVQ
KRERQIGSLREVPVFASDSHPKIREPKVRERD*

mRNA from alignment at tig00000860_pilon:835797..838145-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8927.t1 ID=Ggra8927.t1|Name=Ggra8927.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2349bp|location=Sequence derived from alignment at tig00000860_pilon:835797..838145- (Gracilaria gracilis GNS1m male)
ATGGCCTCGAATTCAGGCGAAGATCATTGGCTTTGGGAGGGGAAGGGCAC
ACCGGATGAAAAACAGGAACGCCGAAGGGTTTTTTACAAGTCTATCGTTT
TGAAGTACGGCGAAGATGGTAGCACGCGCCAGTATAATGTTGGAGATACT
GTCAATATGGCTGGTGGTGAAGATATATGGGTCGCACAGATTATAGACCT
TTTCCAGGTCAATGCCCATGACCCAGAGCTTCGTCAACTCTTGCGAACGG
ACAGCCTAAAGAACGAATCCAAACATCATTATGAGCTTAAAAGGTGTACC
TTGCGATGGTTCTACAACTTCATGGATATGAACCGCCATAGTTTGAGGAA
CGCCAAGTGGCCCAAATTTCTGGAGGATGAGATTTGGTACTCGGATCACA
TCGAAAGGCCTGGCTACAACAGCGTGCAAGTTATCGACGGAAGGGCCTGG
CTTTTCGATAATATGCGTGAGAAAAATGAATTTCTCGCAAACCCACCCGA
AGACTATGACGAAGAAAGGGACATCATTCGCATTGTGCGTGGTTTTGTTG
ACTCAAAACGTGATCATTTGCCCGTTCGCCTACTTCTTGACGGCGAGTTG
AAATGGCTGCAGACCAATCCGTCAGATGACAAGGATTTGTATTCTAATTC
CAAAGCTCGTTTTGAACAGCGTTCGGAATCCCCCGCAACGCAGAAGCGGC
CTAAGCATCGGCGCACATCACTCCGTGAACCCGTCAACGTTGACGAAGAC
GAGTTTGATCCAGCAGATGTAAAACCCAAGAGTCAGAAAAGAAGACATCG
AGCGCCTCATGCGAAAGCTGTACCAGAGGTCTCTACCCCGCCCAGGCGTC
AATTTCGAAGAAGAAAAGTGACAATCGATGAGGATGAAGAGTCCCCAATG
CAGGATATAGAAGATGACCCGAACGATAACATCCCACTCTCCCAACTTCG
GCCTAGTACCTCCCGTCCTAAACCCCCTGAGCAACCCCCTGAGCAACCAA
CGGACATTGATAAACTCAATGTGGAAGTGCGGGATCTTGTAAATAGTCTT
AATGCTTCTGCTTTTGCAGATGATGGCCCTGAACCGTCAGCAAAACCGCC
TGAGCAGTCGGAAACAAAAACATCACGACCTTATGTACCAGTGGACGAAG
ACGAAATAACTCCAGCTCCCCCCAAGCTGAAATCACAGCGGAAGCCGTTG
GTTCAGAAAGGGAAAAGCAAGACCGCAGTCGCCCCGAGGTCGAAGAAGCG
TCCTGCGAAGCCAAGCCCTCCAGTGAACAATGAAGACGCAATAATTATAA
TCGACAGTGACGAAGAAGAGCCACAACCAAAGGTCCAACCGCAACGGAGC
CCACCCAAGCTACAGCGGTTTCACCCAGGAGCTGCTAATCGCGCGTACAG
GGGAGGAAGGCATGGAAAGCCATCAACGAGGAATCGCTCGTCTTTCATGC
CTACATCGAGAGAAAACGCAAGCACTCCTTCCAAGAAGCAAAGTGATCCT
CAACGAGATGATCCTAAGAGAGGTCCCTCTGGATCTGGTGTCGATACAGC
CCCGCGAGCAAAACGGGTCCATAAATCGAAGAGCTCTAAGGATACAAAAG
CGGAAGCCCAAAGTCGCCCCAAGGAAGGAAAAGGCGCTTTCGTGAAAGAA
AGTCGCAATTTCAGTGCGGCTGTGCGGAACAATAGTTTCGACCACAGTGA
CGAAATCACTCCTGTAAATGGTTCAAGAGGGAGCACCGAAGGACGAGGAA
CAAAACGGGTTGCGGCAGATGACATTGGTCATCATCAAAATCTGGCTAAA
CGCCGGTCGCTAGGGCCTGCCGTCAAAACGCCAAAACCCCCAGAGCCACG
TCCTGATAAAGTACAAGCTGCTGGACGCTCCGCGGATAATAGGAAGGAAG
CCGTCGCCAAGACTCCGACAGACAAGAATCCTGGAAGCAAACTTCGCGAA
AGACCGGGAGCGAGAAAGGTTGTCTCAGACAACGTCATAGATGTAAACGA
CAGTGACACGGAGCCAGATGACAGACGGCTACAAGAAGATGGTCCTTCTG
TGCTCAAGGTCACACAGGATCAACGAAAGCTCACAGATAATGTGTATCGG
ATCCATGGCCGCATGAACGCTGCTGACAAAGACTTTCTGGCCAACGAACT
GGAATGGCTCATTAACGAGGTCGTTCTCTTTCATGACGGGCAGAAAGGTT
CCTTCAACGAAGAGGAATACGGAAGGGTTCTTCGTGATCAGCTCGTTCAG
AAACGTGAAAGACAAATCGGTTCCCTGCGTGAGGTCCCAGTTTTCGCGAG
TGATTCTCATCCGAAAATACGAGAGCCGAAAGTGAGAGAACGGGATTGA

Coding sequence (CDS) from alignment at tig00000860_pilon:835797..838145-

>Ggra8927.t1 ID=Ggra8927.t1|Name=Ggra8927.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2349bp|location=Sequence derived from alignment at tig00000860_pilon:835797..838145- (Gracilaria gracilis GNS1m male)
ATGGCCTCGAATTCAGGCGAAGATCATTGGCTTTGGGAGGGGAAGGGCAC
ACCGGATGAAAAACAGGAACGCCGAAGGGTTTTTTACAAGTCTATCGTTT
TGAAGTACGGCGAAGATGGTAGCACGCGCCAGTATAATGTTGGAGATACT
GTCAATATGGCTGGTGGTGAAGATATATGGGTCGCACAGATTATAGACCT
TTTCCAGGTCAATGCCCATGACCCAGAGCTTCGTCAACTCTTGCGAACGG
ACAGCCTAAAGAACGAATCCAAACATCATTATGAGCTTAAAAGGTGTACC
TTGCGATGGTTCTACAACTTCATGGATATGAACCGCCATAGTTTGAGGAA
CGCCAAGTGGCCCAAATTTCTGGAGGATGAGATTTGGTACTCGGATCACA
TCGAAAGGCCTGGCTACAACAGCGTGCAAGTTATCGACGGAAGGGCCTGG
CTTTTCGATAATATGCGTGAGAAAAATGAATTTCTCGCAAACCCACCCGA
AGACTATGACGAAGAAAGGGACATCATTCGCATTGTGCGTGGTTTTGTTG
ACTCAAAACGTGATCATTTGCCCGTTCGCCTACTTCTTGACGGCGAGTTG
AAATGGCTGCAGACCAATCCGTCAGATGACAAGGATTTGTATTCTAATTC
CAAAGCTCGTTTTGAACAGCGTTCGGAATCCCCCGCAACGCAGAAGCGGC
CTAAGCATCGGCGCACATCACTCCGTGAACCCGTCAACGTTGACGAAGAC
GAGTTTGATCCAGCAGATGTAAAACCCAAGAGTCAGAAAAGAAGACATCG
AGCGCCTCATGCGAAAGCTGTACCAGAGGTCTCTACCCCGCCCAGGCGTC
AATTTCGAAGAAGAAAAGTGACAATCGATGAGGATGAAGAGTCCCCAATG
CAGGATATAGAAGATGACCCGAACGATAACATCCCACTCTCCCAACTTCG
GCCTAGTACCTCCCGTCCTAAACCCCCTGAGCAACCCCCTGAGCAACCAA
CGGACATTGATAAACTCAATGTGGAAGTGCGGGATCTTGTAAATAGTCTT
AATGCTTCTGCTTTTGCAGATGATGGCCCTGAACCGTCAGCAAAACCGCC
TGAGCAGTCGGAAACAAAAACATCACGACCTTATGTACCAGTGGACGAAG
ACGAAATAACTCCAGCTCCCCCCAAGCTGAAATCACAGCGGAAGCCGTTG
GTTCAGAAAGGGAAAAGCAAGACCGCAGTCGCCCCGAGGTCGAAGAAGCG
TCCTGCGAAGCCAAGCCCTCCAGTGAACAATGAAGACGCAATAATTATAA
TCGACAGTGACGAAGAAGAGCCACAACCAAAGGTCCAACCGCAACGGAGC
CCACCCAAGCTACAGCGGTTTCACCCAGGAGCTGCTAATCGCGCGTACAG
GGGAGGAAGGCATGGAAAGCCATCAACGAGGAATCGCTCGTCTTTCATGC
CTACATCGAGAGAAAACGCAAGCACTCCTTCCAAGAAGCAAAGTGATCCT
CAACGAGATGATCCTAAGAGAGGTCCCTCTGGATCTGGTGTCGATACAGC
CCCGCGAGCAAAACGGGTCCATAAATCGAAGAGCTCTAAGGATACAAAAG
CGGAAGCCCAAAGTCGCCCCAAGGAAGGAAAAGGCGCTTTCGTGAAAGAA
AGTCGCAATTTCAGTGCGGCTGTGCGGAACAATAGTTTCGACCACAGTGA
CGAAATCACTCCTGTAAATGGTTCAAGAGGGAGCACCGAAGGACGAGGAA
CAAAACGGGTTGCGGCAGATGACATTGGTCATCATCAAAATCTGGCTAAA
CGCCGGTCGCTAGGGCCTGCCGTCAAAACGCCAAAACCCCCAGAGCCACG
TCCTGATAAAGTACAAGCTGCTGGACGCTCCGCGGATAATAGGAAGGAAG
CCGTCGCCAAGACTCCGACAGACAAGAATCCTGGAAGCAAACTTCGCGAA
AGACCGGGAGCGAGAAAGGTTGTCTCAGACAACGTCATAGATGTAAACGA
CAGTGACACGGAGCCAGATGACAGACGGCTACAAGAAGATGGTCCTTCTG
TGCTCAAGGTCACACAGGATCAACGAAAGCTCACAGATAATGTGTATCGG
ATCCATGGCCGCATGAACGCTGCTGACAAAGACTTTCTGGCCAACGAACT
GGAATGGCTCATTAACGAGGTCGTTCTCTTTCATGACGGGCAGAAAGGTT
CCTTCAACGAAGAGGAATACGGAAGGGTTCTTCGTGATCAGCTCGTTCAG
AAACGTGAAAGACAAATCGGTTCCCTGCGTGAGGTCCCAGTTTTCGCGAG
TGATTCTCATCCGAAAATACGAGAGCCGAAAGTGAGAGAACGGGATTGA