Ggra8852.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8852.t1
Unique NameGgra8852.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:531244..532674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010667163.1
Preferred nameFVE
PFAMsCAF1C_H4-bd,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K10752
KEGG Pathwayko04218,map04218
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009892,GO:0009987,GO:0010224,GO:0010468,GO:0010605,GO:0010629,GO:0019222,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080008,GO:0090304,GO:1901360,GO:1902494,GO:1990234
Evalue7.02e-83
EggNOG OGsKOG0264@1|root,KOG0264@2759|Eukaryota,37M78@33090|Viridiplantae,3GDJ8@35493|Streptophyta
DescriptionWD-40 repeat-containing protein
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8852Ggra8852Gracilaria gracilis GNS1m malegenetig00000860_pilon 531244..532674 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8852.t1.stop1Ggra8852.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 531244..531246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8852.t1.CDS1Ggra8852.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 531244..532674 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8852.t1.exon1Ggra8852.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 531244..532674 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8852.t1.start1Ggra8852.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 532672..532674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8852.t1Ggra8852.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 531244..532674 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8852.t1 ID=Ggra8852.t1|Name=Ggra8852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp
MVANAEPDAQRKRTMPVGSLNRSTRFKLWKEQDVPILYDWISSRPLVWPS
AAVQWGAPIEDSRRDRAPNNHTFSNRAIYLSERTGDATRDPNTLLQFEVR
VVHELTNKPSEVARPWVEEPAITDRSDTNSSRDFVLRKRILHPGEVNRIR
LIARDVVVTHTDSPHLFVWDFKKQQDRKPRDTSPNIPDCTLVGHSSNAEY
AIDVAGYSGTEEDKWVVSGGSDCSVLLWRMEDYQSSGQRLSPFVRMTGSN
GISKPVGHTEHIEDVSFCGKQRNVIASVGRDEALFLWDVRAPQSPTAYVY
KAHKGDINCCDYGGLCENYIVTGGEDKQVRLWDTRKLKGTAGEPQPLREL
RGHTEAITNLMWNRNVENVLASGAIDGQVLIWGIGDECSHRQADSPYYDV
SPELLFKHVGHSINDENIWDLDWLPSSSDPWCIASLSETVGSGGSVLQVW
RISDIIHRPTEEVAADLKRYSRSRDL*
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spliced messenger RNA

>Ggra8852.t1 ID=Ggra8852.t1|Name=Ggra8852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000860_pilon:531244..532674- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCAAACGCCGAACCTGATGCACAGAGGAAGAGAACTATGCCAGT
CGGTTCATTAAACCGAAGCACTCGCTTTAAGCTCTGGAAGGAACAGGATG
TGCCCATTCTTTACGACTGGATTTCCTCTCGTCCTCTCGTCTGGCCCAGT
GCTGCAGTCCAATGGGGGGCACCGATTGAGGATTCTCGAAGAGATCGTGC
CCCCAACAACCATACGTTTTCAAATCGCGCTATCTACCTCTCTGAACGAA
CTGGAGATGCAACACGCGATCCGAATACGTTGCTCCAGTTCGAAGTAAGA
GTTGTTCATGAGTTAACCAACAAGCCCTCAGAAGTAGCGCGGCCCTGGGT
AGAAGAACCTGCCATTACGGATCGGTCAGACACGAATTCGTCACGTGATT
TTGTACTGCGGAAAAGAATACTTCATCCTGGTGAAGTGAATCGCATTCGA
CTCATAGCCCGCGATGTAGTTGTCACTCACACAGACAGCCCTCATCTATT
CGTCTGGGACTTCAAGAAACAACAGGATCGAAAACCCCGCGATACTTCGC
CAAATATTCCGGACTGTACTCTTGTGGGTCACTCTAGCAATGCTGAGTAT
GCAATTGACGTTGCTGGGTACTCAGGAACCGAAGAGGACAAGTGGGTGGT
GAGCGGGGGAAGTGATTGTTCTGTGCTTCTGTGGCGGATGGAAGATTATC
AGAGTTCTGGACAGAGATTGAGCCCATTTGTGCGTATGACGGGAAGTAAC
GGCATTAGTAAGCCGGTCGGGCACACTGAGCATATAGAAGATGTGAGTTT
TTGCGGAAAGCAAAGGAACGTCATAGCATCTGTTGGACGTGACGAGGCTC
TGTTCCTGTGGGATGTACGTGCGCCTCAAAGCCCAACAGCGTACGTTTAC
AAAGCCCACAAAGGAGATATAAACTGCTGCGACTACGGTGGACTTTGTGA
GAACTATATTGTGACGGGAGGTGAAGATAAACAAGTGCGTCTTTGGGATA
CGCGAAAACTGAAAGGTACTGCTGGGGAGCCACAGCCTCTCCGAGAGCTT
CGAGGTCACACAGAAGCGATAACGAACTTAATGTGGAATAGAAATGTGGA
GAATGTCCTCGCCTCAGGCGCGATTGACGGCCAAGTATTAATCTGGGGAA
TTGGCGATGAATGTTCGCATCGACAAGCGGACTCTCCATATTATGACGTC
AGTCCTGAGCTACTCTTTAAACACGTAGGGCACAGTATCAACGATGAAAA
CATTTGGGACCTAGATTGGTTGCCTTCGAGCTCTGACCCATGGTGCATAG
CATCCCTCAGTGAGACAGTTGGGTCTGGAGGTTCAGTACTTCAAGTTTGG
AGAATCTCTGATATAATCCATAGACCAACGGAGGAAGTAGCGGCAGACCT
TAAACGATATTCAAGAAGCAGGGACCTATAG
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protein sequence of Ggra8852.t1

>Ggra8852.t1 ID=Ggra8852.t1|Name=Ggra8852.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=477bp
MVANAEPDAQRKRTMPVGSLNRSTRFKLWKEQDVPILYDWISSRPLVWPS
AAVQWGAPIEDSRRDRAPNNHTFSNRAIYLSERTGDATRDPNTLLQFEVR
VVHELTNKPSEVARPWVEEPAITDRSDTNSSRDFVLRKRILHPGEVNRIR
LIARDVVVTHTDSPHLFVWDFKKQQDRKPRDTSPNIPDCTLVGHSSNAEY
AIDVAGYSGTEEDKWVVSGGSDCSVLLWRMEDYQSSGQRLSPFVRMTGSN
GISKPVGHTEHIEDVSFCGKQRNVIASVGRDEALFLWDVRAPQSPTAYVY
KAHKGDINCCDYGGLCENYIVTGGEDKQVRLWDTRKLKGTAGEPQPLREL
RGHTEAITNLMWNRNVENVLASGAIDGQVLIWGIGDECSHRQADSPYYDV
SPELLFKHVGHSINDENIWDLDWLPSSSDPWCIASLSETVGSGGSVLQVW
RISDIIHRPTEEVAADLKRYSRSRDL*
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mRNA from alignment at tig00000860_pilon:531244..532674-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8852.t1 ID=Ggra8852.t1|Name=Ggra8852.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000860_pilon:531244..532674- (Gracilaria gracilis GNS1m male)
ATGGTCGCAAACGCCGAACCTGATGCACAGAGGAAGAGAACTATGCCAGT
CGGTTCATTAAACCGAAGCACTCGCTTTAAGCTCTGGAAGGAACAGGATG
TGCCCATTCTTTACGACTGGATTTCCTCTCGTCCTCTCGTCTGGCCCAGT
GCTGCAGTCCAATGGGGGGCACCGATTGAGGATTCTCGAAGAGATCGTGC
CCCCAACAACCATACGTTTTCAAATCGCGCTATCTACCTCTCTGAACGAA
CTGGAGATGCAACACGCGATCCGAATACGTTGCTCCAGTTCGAAGTAAGA
GTTGTTCATGAGTTAACCAACAAGCCCTCAGAAGTAGCGCGGCCCTGGGT
AGAAGAACCTGCCATTACGGATCGGTCAGACACGAATTCGTCACGTGATT
TTGTACTGCGGAAAAGAATACTTCATCCTGGTGAAGTGAATCGCATTCGA
CTCATAGCCCGCGATGTAGTTGTCACTCACACAGACAGCCCTCATCTATT
CGTCTGGGACTTCAAGAAACAACAGGATCGAAAACCCCGCGATACTTCGC
CAAATATTCCGGACTGTACTCTTGTGGGTCACTCTAGCAATGCTGAGTAT
GCAATTGACGTTGCTGGGTACTCAGGAACCGAAGAGGACAAGTGGGTGGT
GAGCGGGGGAAGTGATTGTTCTGTGCTTCTGTGGCGGATGGAAGATTATC
AGAGTTCTGGACAGAGATTGAGCCCATTTGTGCGTATGACGGGAAGTAAC
GGCATTAGTAAGCCGGTCGGGCACACTGAGCATATAGAAGATGTGAGTTT
TTGCGGAAAGCAAAGGAACGTCATAGCATCTGTTGGACGTGACGAGGCTC
TGTTCCTGTGGGATGTACGTGCGCCTCAAAGCCCAACAGCGTACGTTTAC
AAAGCCCACAAAGGAGATATAAACTGCTGCGACTACGGTGGACTTTGTGA
GAACTATATTGTGACGGGAGGTGAAGATAAACAAGTGCGTCTTTGGGATA
CGCGAAAACTGAAAGGTACTGCTGGGGAGCCACAGCCTCTCCGAGAGCTT
CGAGGTCACACAGAAGCGATAACGAACTTAATGTGGAATAGAAATGTGGA
GAATGTCCTCGCCTCAGGCGCGATTGACGGCCAAGTATTAATCTGGGGAA
TTGGCGATGAATGTTCGCATCGACAAGCGGACTCTCCATATTATGACGTC
AGTCCTGAGCTACTCTTTAAACACGTAGGGCACAGTATCAACGATGAAAA
CATTTGGGACCTAGATTGGTTGCCTTCGAGCTCTGACCCATGGTGCATAG
CATCCCTCAGTGAGACAGTTGGGTCTGGAGGTTCAGTACTTCAAGTTTGG
AGAATCTCTGATATAATCCATAGACCAACGGAGGAAGTAGCGGCAGACCT
TAAACGATATTCAAGAAGCAGGGACCTATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:531244..532674-

>Ggra8852.t1 ID=Ggra8852.t1|Name=Ggra8852.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000860_pilon:531244..532674- (Gracilaria gracilis GNS1m male)
ATGGTCGCAAACGCCGAACCTGATGCACAGAGGAAGAGAACTATGCCAGT
CGGTTCATTAAACCGAAGCACTCGCTTTAAGCTCTGGAAGGAACAGGATG
TGCCCATTCTTTACGACTGGATTTCCTCTCGTCCTCTCGTCTGGCCCAGT
GCTGCAGTCCAATGGGGGGCACCGATTGAGGATTCTCGAAGAGATCGTGC
CCCCAACAACCATACGTTTTCAAATCGCGCTATCTACCTCTCTGAACGAA
CTGGAGATGCAACACGCGATCCGAATACGTTGCTCCAGTTCGAAGTAAGA
GTTGTTCATGAGTTAACCAACAAGCCCTCAGAAGTAGCGCGGCCCTGGGT
AGAAGAACCTGCCATTACGGATCGGTCAGACACGAATTCGTCACGTGATT
TTGTACTGCGGAAAAGAATACTTCATCCTGGTGAAGTGAATCGCATTCGA
CTCATAGCCCGCGATGTAGTTGTCACTCACACAGACAGCCCTCATCTATT
CGTCTGGGACTTCAAGAAACAACAGGATCGAAAACCCCGCGATACTTCGC
CAAATATTCCGGACTGTACTCTTGTGGGTCACTCTAGCAATGCTGAGTAT
GCAATTGACGTTGCTGGGTACTCAGGAACCGAAGAGGACAAGTGGGTGGT
GAGCGGGGGAAGTGATTGTTCTGTGCTTCTGTGGCGGATGGAAGATTATC
AGAGTTCTGGACAGAGATTGAGCCCATTTGTGCGTATGACGGGAAGTAAC
GGCATTAGTAAGCCGGTCGGGCACACTGAGCATATAGAAGATGTGAGTTT
TTGCGGAAAGCAAAGGAACGTCATAGCATCTGTTGGACGTGACGAGGCTC
TGTTCCTGTGGGATGTACGTGCGCCTCAAAGCCCAACAGCGTACGTTTAC
AAAGCCCACAAAGGAGATATAAACTGCTGCGACTACGGTGGACTTTGTGA
GAACTATATTGTGACGGGAGGTGAAGATAAACAAGTGCGTCTTTGGGATA
CGCGAAAACTGAAAGGTACTGCTGGGGAGCCACAGCCTCTCCGAGAGCTT
CGAGGTCACACAGAAGCGATAACGAACTTAATGTGGAATAGAAATGTGGA
GAATGTCCTCGCCTCAGGCGCGATTGACGGCCAAGTATTAATCTGGGGAA
TTGGCGATGAATGTTCGCATCGACAAGCGGACTCTCCATATTATGACGTC
AGTCCTGAGCTACTCTTTAAACACGTAGGGCACAGTATCAACGATGAAAA
CATTTGGGACCTAGATTGGTTGCCTTCGAGCTCTGACCCATGGTGCATAG
CATCCCTCAGTGAGACAGTTGGGTCTGGAGGTTCAGTACTTCAAGTTTGG
AGAATCTCTGATATAATCCATAGACCAACGGAGGAAGTAGCGGCAGACCT
TAAACGATATTCAAGAAGCAGGGACCTATAG
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