Ggra8850.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8850.t1
Unique NameGgra8850.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:511858..512346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8850Ggra8850Gracilaria gracilis GNS1m malegenetig00000860_pilon 511858..512346 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8850.t1.start1Ggra8850.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 511858..511860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8850.t1.CDS1Ggra8850.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 511858..512346 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8850.t1.exon1Ggra8850.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 511858..512346 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8850.t1.stop1Ggra8850.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 512344..512346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8850.t1Ggra8850.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 511858..512346 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8850.t1 ID=Ggra8850.t1|Name=Ggra8850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MHLSVLAKSRRRRKIRAKLDEVARVVSAPRMNHGSQPLFREAHCAVLTES
GELIVANNTSVRRFQAIVPKIRAIRHSAQSISSFLGMESSTVVHVRGRTR
MLHAYEVDAHTLVAVTQVSPDAMNLENAVAYIDECMGVNKKKEADNLDKT
LLEQLSNLLLEM*
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spliced messenger RNA

>Ggra8850.t1 ID=Ggra8850.t1|Name=Ggra8850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:511858..512346+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCTCTGTCCTCGCCAAGTCTCGTCGTCGCCGGAAAATACGCGC
AAAACTTGATGAAGTGGCTCGCGTCGTCTCGGCTCCACGCATGAACCACG
GATCTCAGCCTTTGTTTAGAGAGGCACATTGCGCTGTTCTTACCGAATCT
GGAGAACTCATTGTCGCCAACAATACGTCCGTCCGCCGTTTCCAAGCTAT
AGTACCAAAGATTCGTGCAATTCGACACTCTGCGCAATCAATTTCATCTT
TTCTTGGAATGGAGTCATCAACAGTTGTTCACGTCCGCGGCAGAACTCGC
ATGTTGCATGCGTACGAGGTTGATGCTCATACGCTTGTTGCGGTCACTCA
AGTTTCACCCGATGCTATGAATCTTGAGAACGCTGTCGCATATATTGATG
AATGCATGGGCGTCAACAAGAAGAAAGAAGCTGATAACTTGGACAAAACT
CTTCTTGAACAGCTCTCTAATCTTTTGTTGGAAATGTAA
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protein sequence of Ggra8850.t1

>Ggra8850.t1 ID=Ggra8850.t1|Name=Ggra8850.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MHLSVLAKSRRRRKIRAKLDEVARVVSAPRMNHGSQPLFREAHCAVLTES
GELIVANNTSVRRFQAIVPKIRAIRHSAQSISSFLGMESSTVVHVRGRTR
MLHAYEVDAHTLVAVTQVSPDAMNLENAVAYIDECMGVNKKKEADNLDKT
LLEQLSNLLLEM*
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mRNA from alignment at tig00000860_pilon:511858..512346+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8850.t1 ID=Ggra8850.t1|Name=Ggra8850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:511858..512346+ (Gracilaria gracilis GNS1m male)
ATGCACCTCTCTGTCCTCGCCAAGTCTCGTCGTCGCCGGAAAATACGCGC
AAAACTTGATGAAGTGGCTCGCGTCGTCTCGGCTCCACGCATGAACCACG
GATCTCAGCCTTTGTTTAGAGAGGCACATTGCGCTGTTCTTACCGAATCT
GGAGAACTCATTGTCGCCAACAATACGTCCGTCCGCCGTTTCCAAGCTAT
AGTACCAAAGATTCGTGCAATTCGACACTCTGCGCAATCAATTTCATCTT
TTCTTGGAATGGAGTCATCAACAGTTGTTCACGTCCGCGGCAGAACTCGC
ATGTTGCATGCGTACGAGGTTGATGCTCATACGCTTGTTGCGGTCACTCA
AGTTTCACCCGATGCTATGAATCTTGAGAACGCTGTCGCATATATTGATG
AATGCATGGGCGTCAACAAGAAGAAAGAAGCTGATAACTTGGACAAAACT
CTTCTTGAACAGCTCTCTAATCTTTTGTTGGAAATGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:511858..512346+

>Ggra8850.t1 ID=Ggra8850.t1|Name=Ggra8850.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000860_pilon:511858..512346+ (Gracilaria gracilis GNS1m male)
ATGCACCTCTCTGTCCTCGCCAAGTCTCGTCGTCGCCGGAAAATACGCGC
AAAACTTGATGAAGTGGCTCGCGTCGTCTCGGCTCCACGCATGAACCACG
GATCTCAGCCTTTGTTTAGAGAGGCACATTGCGCTGTTCTTACCGAATCT
GGAGAACTCATTGTCGCCAACAATACGTCCGTCCGCCGTTTCCAAGCTAT
AGTACCAAAGATTCGTGCAATTCGACACTCTGCGCAATCAATTTCATCTT
TTCTTGGAATGGAGTCATCAACAGTTGTTCACGTCCGCGGCAGAACTCGC
ATGTTGCATGCGTACGAGGTTGATGCTCATACGCTTGTTGCGGTCACTCA
AGTTTCACCCGATGCTATGAATCTTGAGAACGCTGTCGCATATATTGATG
AATGCATGGGCGTCAACAAGAAGAAAGAAGCTGATAACTTGGACAAAACT
CTTCTTGAACAGCTCTCTAATCTTTTGTTGGAAATGTAA
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