Ggra8846.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8846.t2
Unique Name	Ggra8846.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	593

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:497921..499699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8846	Ggra8846	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 495998..499699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8846.t2.start1	Ggra8846.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 497921..497923 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8846.t2.CDS1	Ggra8846.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 497921..499699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8846.t2.exon1	Ggra8846.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 497921..499699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8846.t2.stop1	Ggra8846.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 499697..499699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8846.t2	Ggra8846.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 497921..499699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:497921..499699+
coding sequence from alignment at tig00000860_pilon:497921..499699+

mRNA sequence

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=593bp
MREPRSKTKSEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKR
VGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKG
LPRVRGLSSIKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVES
KPNCVDIYSKRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGV
SLSDANDEKDFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIR
IWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGV
ARMWEREEDDTWKEYIIEKDSNEDSKMSSTFICCGKKTKLIATYVTKSPY
VVVWDTGNKDLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGA
GEFWAKCGEGGSSGQGGSKHQQGSKKLWDNPEFFFTQQTRDSNSVVRPGE
LQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVGGGSED
GKRDGREVLQRQGMAIKLEDKRTELFEVEGGVRVGAVASGVESSEGKKVG
EKGGSKVVVSCAKVSANEKESAGKVKEVANAATAAGDVSSVT*

spliced messenger RNA

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000860_pilon:497921..499699+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGAGCCACGCAGCAAAACGAAGTCAGAACCTACGCCCAGGCCAGC
CAGTTTGCATGGAAATGGGAAAAACTCGACCACAACACAGCCCACTGCAC
CACGGAAGACTATCTCTATAGCAATTTGGGACATTTCTTCCGGGAAACGG
GTGGGTGAGGTGCCAAATATTCATAACCATGTGAGTCATGTGGCCATAAC
GAAGGATAACAACTGTATAATTGGCGAAACATATGATGGGCTTTTCTTCT
GGCATTTTGATAAACGGGAGACTTGGACTGTGCGTACGAGTCTCAAAGGG
CTTCCTCGCGTACGAGGGTTGTCGTCAATTAAGCCGACCGCAACTCCAGA
GCACGTTTTAACCACGCACAAGCGAGGAGGAAGGTCTGTTATAGTGTTGT
GGAATACTCGAACTGGAGCGCAAGAAAAGGTTTATGATGCAGTAGAAAGC
AAGCCCAATTGTGTAGATATATACTCGAAGCGGCAGTATTTTGCCTCAGG
CCATGACAATGGTTTTATTCACCTTTGGAACTGGAGAGACAAGAGACCAA
TCTTGACATTCAAAAATGAGGGGTCCGAACCAGGGGCACAGAACGGCGTG
AGCTTGAGTGACGCAAACGATGAAAAGGACTTCAGCCAGAGTGCACAAGC
CAGCGCTAGAACGATAAGCATTTCATTTTTCGAGAGAGAGAATGACCTGT
CGTTGGCGTCAGTGTCTTCGGAACTAGGGGGGGTACAGCAATACATTCGT
ATATGGGTTTTACCACCAAAGAAATTCCTTGATGGTTCATCACAAGCTTT
TGTGTCTTGCAAGCGGGCGGCTGTGTGGAAGTGCAGACTAGTGCGACAAG
TGTTCTGTTCAGGAGATGGGAACTTGTTCACGGGCGGAGATGATGGGGTG
GCAAGGATGTGGGAACGAGAAGAAGATGATACGTGGAAGGAATACATTAT
CGAGAAGGACAGTAATGAAGATTCGAAAATGTCGTCCACGTTTATCTGCT
GTGGCAAGAAAACGAAGCTGATTGCAACTTATGTGACAAAGTCACCGTAC
GTGGTTGTGTGGGACACAGGGAATAAGGATCTTCGCAGAACAATCATGAC
GAGGACAGGTGTATACAAACCATACATCCCAATCCAGGCGCAGTCGGTTG
ATGTGGCTGACATGAACCAATACCAAACGCTGAAACAAGAAAAGGGGGCG
GGAGAGTTTTGGGCAAAGTGTGGGGAAGGTGGAAGTTCGGGACAGGGTGG
TTCGAAGCATCAGCAGGGCTCCAAAAAGCTATGGGACAATCCCGAGTTTT
TCTTTACACAACAAACTCGAGATTCTAATTCTGTAGTTCGACCCGGTGAA
CTTCAACCATGGTTGCAACTGAAACTGGAACATGGCGACATGCAAGGTTT
GGACGTGTGCTTTGATCAACCGGTTACGTCCGGGGTGACGGGACTGTTTG
TAAATGCACCCAACTCGTTCGGAGGTAACGTTGGAGGTGGAAGCGAAGAT
GGTAAGCGCGATGGAAGGGAGGTGTTGCAGAGGCAAGGGATGGCTATAAA
ATTGGAAGACAAGCGAACGGAATTGTTCGAGGTAGAGGGCggggtgcgag
ttggcgcggtggcgagtggagtggagtcgagcgaagggaAGAAGGTTGGT
GAGAAAGGGGGGTCGAAAGTGGTGGTTAGTTGCGCAAAAGTTTCAGCGAA
TGAGAAGGAGAGTGCAGGTAAGGTGAAGGAAGTTGCAAATGCGGCGACGG
CGGCGGGAGATGTCTCGAGCGTTACATAA

protein sequence of Ggra8846.t2

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=593bp
MREPRSKTKSEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKR
VGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKG
LPRVRGLSSIKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVES
KPNCVDIYSKRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGV
SLSDANDEKDFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIR
IWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGV
ARMWEREEDDTWKEYIIEKDSNEDSKMSSTFICCGKKTKLIATYVTKSPY
VVVWDTGNKDLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGA
GEFWAKCGEGGSSGQGGSKHQQGSKKLWDNPEFFFTQQTRDSNSVVRPGE
LQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVGGGSED
GKRDGREVLQRQGMAIKLEDKRTELFEVEGGVRVGAVASGVESSEGKKVG
EKGGSKVVVSCAKVSANEKESAGKVKEVANAATAAGDVSSVT*

mRNA from alignment at tig00000860_pilon:497921..499699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00000860_pilon:497921..499699+ (Gracilaria gracilis GNS1m male)
ATGAGGGAGCCACGCAGCAAAACGAAGTCAGAACCTACGCCCAGGCCAGC
CAGTTTGCATGGAAATGGGAAAAACTCGACCACAACACAGCCCACTGCAC
CACGGAAGACTATCTCTATAGCAATTTGGGACATTTCTTCCGGGAAACGG
GTGGGTGAGGTGCCAAATATTCATAACCATGTGAGTCATGTGGCCATAAC
GAAGGATAACAACTGTATAATTGGCGAAACATATGATGGGCTTTTCTTCT
GGCATTTTGATAAACGGGAGACTTGGACTGTGCGTACGAGTCTCAAAGGG
CTTCCTCGCGTACGAGGGTTGTCGTCAATTAAGCCGACCGCAACTCCAGA
GCACGTTTTAACCACGCACAAGCGAGGAGGAAGGTCTGTTATAGTGTTGT
GGAATACTCGAACTGGAGCGCAAGAAAAGGTTTATGATGCAGTAGAAAGC
AAGCCCAATTGTGTAGATATATACTCGAAGCGGCAGTATTTTGCCTCAGG
CCATGACAATGGTTTTATTCACCTTTGGAACTGGAGAGACAAGAGACCAA
TCTTGACATTCAAAAATGAGGGGTCCGAACCAGGGGCACAGAACGGCGTG
AGCTTGAGTGACGCAAACGATGAAAAGGACTTCAGCCAGAGTGCACAAGC
CAGCGCTAGAACGATAAGCATTTCATTTTTCGAGAGAGAGAATGACCTGT
CGTTGGCGTCAGTGTCTTCGGAACTAGGGGGGGTACAGCAATACATTCGT
ATATGGGTTTTACCACCAAAGAAATTCCTTGATGGTTCATCACAAGCTTT
TGTGTCTTGCAAGCGGGCGGCTGTGTGGAAGTGCAGACTAGTGCGACAAG
TGTTCTGTTCAGGAGATGGGAACTTGTTCACGGGCGGAGATGATGGGGTG
GCAAGGATGTGGGAACGAGAAGAAGATGATACGTGGAAGGAATACATTAT
CGAGAAGGACAGTAATGAAGATTCGAAAATGTCGTCCACGTTTATCTGCT
GTGGCAAGAAAACGAAGCTGATTGCAACTTATGTGACAAAGTCACCGTAC
GTGGTTGTGTGGGACACAGGGAATAAGGATCTTCGCAGAACAATCATGAC
GAGGACAGGTGTATACAAACCATACATCCCAATCCAGGCGCAGTCGGTTG
ATGTGGCTGACATGAACCAATACCAAACGCTGAAACAAGAAAAGGGGGCG
GGAGAGTTTTGGGCAAAGTGTGGGGAAGGTGGAAGTTCGGGACAGGGTGG
TTCGAAGCATCAGCAGGGCTCCAAAAAGCTATGGGACAATCCCGAGTTTT
TCTTTACACAACAAACTCGAGATTCTAATTCTGTAGTTCGACCCGGTGAA
CTTCAACCATGGTTGCAACTGAAACTGGAACATGGCGACATGCAAGGTTT
GGACGTGTGCTTTGATCAACCGGTTACGTCCGGGGTGACGGGACTGTTTG
TAAATGCACCCAACTCGTTCGGAGGTAACGTTGGAGGTGGAAGCGAAGAT
GGTAAGCGCGATGGAAGGGAGGTGTTGCAGAGGCAAGGGATGGCTATAAA
ATTGGAAGACAAGCGAACGGAATTGTTCGAGGTAGAGGGCggggtgcgag
ttggcgcggtggcgagtggagtggagtcgagcgaagggaAGAAGGTTGGT
GAGAAAGGGGGGTCGAAAGTGGTGGTTAGTTGCGCAAAAGTTTCAGCGAA
TGAGAAGGAGAGTGCAGGTAAGGTGAAGGAAGTTGCAAATGCGGCGACGG
CGGCGGGAGATGTCTCGAGCGTTACATAA

Coding sequence (CDS) from alignment at tig00000860_pilon:497921..499699+

>Ggra8846.t2 ID=Ggra8846.t2|Name=Ggra8846.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00000860_pilon:497921..499699+ (Gracilaria gracilis GNS1m male)
ATGAGGGAGCCACGCAGCAAAACGAAGTCAGAACCTACGCCCAGGCCAGC
CAGTTTGCATGGAAATGGGAAAAACTCGACCACAACACAGCCCACTGCAC
CACGGAAGACTATCTCTATAGCAATTTGGGACATTTCTTCCGGGAAACGG
GTGGGTGAGGTGCCAAATATTCATAACCATGTGAGTCATGTGGCCATAAC
GAAGGATAACAACTGTATAATTGGCGAAACATATGATGGGCTTTTCTTCT
GGCATTTTGATAAACGGGAGACTTGGACTGTGCGTACGAGTCTCAAAGGG
CTTCCTCGCGTACGAGGGTTGTCGTCAATTAAGCCGACCGCAACTCCAGA
GCACGTTTTAACCACGCACAAGCGAGGAGGAAGGTCTGTTATAGTGTTGT
GGAATACTCGAACTGGAGCGCAAGAAAAGGTTTATGATGCAGTAGAAAGC
AAGCCCAATTGTGTAGATATATACTCGAAGCGGCAGTATTTTGCCTCAGG
CCATGACAATGGTTTTATTCACCTTTGGAACTGGAGAGACAAGAGACCAA
TCTTGACATTCAAAAATGAGGGGTCCGAACCAGGGGCACAGAACGGCGTG
AGCTTGAGTGACGCAAACGATGAAAAGGACTTCAGCCAGAGTGCACAAGC
CAGCGCTAGAACGATAAGCATTTCATTTTTCGAGAGAGAGAATGACCTGT
CGTTGGCGTCAGTGTCTTCGGAACTAGGGGGGGTACAGCAATACATTCGT
ATATGGGTTTTACCACCAAAGAAATTCCTTGATGGTTCATCACAAGCTTT
TGTGTCTTGCAAGCGGGCGGCTGTGTGGAAGTGCAGACTAGTGCGACAAG
TGTTCTGTTCAGGAGATGGGAACTTGTTCACGGGCGGAGATGATGGGGTG
GCAAGGATGTGGGAACGAGAAGAAGATGATACGTGGAAGGAATACATTAT
CGAGAAGGACAGTAATGAAGATTCGAAAATGTCGTCCACGTTTATCTGCT
GTGGCAAGAAAACGAAGCTGATTGCAACTTATGTGACAAAGTCACCGTAC
GTGGTTGTGTGGGACACAGGGAATAAGGATCTTCGCAGAACAATCATGAC
GAGGACAGGTGTATACAAACCATACATCCCAATCCAGGCGCAGTCGGTTG
ATGTGGCTGACATGAACCAATACCAAACGCTGAAACAAGAAAAGGGGGCG
GGAGAGTTTTGGGCAAAGTGTGGGGAAGGTGGAAGTTCGGGACAGGGTGG
TTCGAAGCATCAGCAGGGCTCCAAAAAGCTATGGGACAATCCCGAGTTTT
TCTTTACACAACAAACTCGAGATTCTAATTCTGTAGTTCGACCCGGTGAA
CTTCAACCATGGTTGCAACTGAAACTGGAACATGGCGACATGCAAGGTTT
GGACGTGTGCTTTGATCAACCGGTTACGTCCGGGGTGACGGGACTGTTTG
TAAATGCACCCAACTCGTTCGGAGGTAACGTTGGAGGTGGAAGCGAAGAT
GGTAAGCGCGATGGAAGGGAGGTGTTGCAGAGGCAAGGGATGGCTATAAA
ATTGGAAGACAAGCGAACGGAATTGTTCGAGGTAGAGGGCggggtgcgag
ttggcgcggtggcgagtggagtggagtcgagcgaagggaAGAAGGTTGGT
GAGAAAGGGGGGTCGAAAGTGGTGGTTAGTTGCGCAAAAGTTTCAGCGAA
TGAGAAGGAGAGTGCAGGTAAGGTGAAGGAAGTTGCAAATGCGGCGACGG
CGGCGGGAGATGTCTCGAGCGTTACATAA